Wall clock time and date at job start Mon Mar 30 2020 04:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 117.00173 * 2 1 4 4 O 1.20818 * 119.99983 * 0.27497 * 3 2 1 5 5 C 1.50706 * 119.99763 * 179.97438 * 3 2 1 6 6 C 1.50699 * 109.46817 * 179.97438 * 5 3 2 7 7 C 1.38311 * 119.92595 * 265.00315 * 6 5 3 8 8 C 1.38085 * 120.07602 * 180.02562 * 7 6 5 9 9 C 1.38926 * 119.92194 * 359.97438 * 8 7 6 10 10 N 1.39674 * 120.07414 * 180.02562 * 9 8 7 11 11 C 1.38895 * 119.85445 * 0.02562 * 9 8 7 12 12 C 1.38125 * 119.92070 * 359.72445 * 11 9 8 13 13 C 1.50705 * 119.96015 * 180.29379 * 12 11 9 14 14 C 1.50697 * 109.47063 * 265.25253 * 13 12 11 15 15 H 1.08003 * 120.00156 * 0.02562 * 14 13 12 16 16 C 1.37886 * 119.99628 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00065 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99519 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47434 * 90.00009 * 18 16 14 20 20 H 1.48504 * 109.46724 * 209.99920 * 18 16 14 21 21 H 1.48498 * 109.47235 * 329.99459 * 18 16 14 22 22 H 1.08996 * 109.47464 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46718 * 299.99877 * 1 2 3 24 24 H 1.08998 * 109.47176 * 60.00127 * 1 2 3 25 25 H 1.09000 * 109.47161 * 299.99883 * 5 3 2 26 26 H 1.09001 * 109.46740 * 60.00026 * 5 3 2 27 27 H 1.07998 * 119.95900 * 0.02562 * 7 6 5 28 28 H 1.07995 * 120.03545 * 180.02562 * 8 7 6 29 29 H 0.97003 * 119.99639 * 0.02562 * 10 9 8 30 30 H 0.97000 * 120.00665 * 179.97438 * 10 9 8 31 31 H 1.08000 * 120.03489 * 180.02562 * 11 9 8 32 32 H 1.09005 * 109.46887 * 25.25382 * 13 12 11 33 33 H 1.08997 * 109.46554 * 145.25129 * 13 12 11 34 34 H 0.97004 * 119.99794 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0050 5 6 3.5664 1.2747 0.0006 6 6 3.9937 2.7199 -0.0002 7 6 4.2900 3.3512 -1.1946 8 6 4.6823 4.6751 -1.1989 9 6 4.7788 5.3732 -0.0016 10 7 5.1749 6.7126 -0.0022 11 6 4.4806 4.7362 1.1961 12 6 4.0837 3.4132 1.1927 13 6 3.7535 2.7230 2.4911 14 6 4.9699 1.9886 2.9931 15 1 5.8902 2.0189 2.4287 16 6 4.9078 1.2780 4.1731 17 7 3.7873 1.2416 4.8606 18 14 6.4158 0.3682 4.7957 19 1 7.2115 1.2681 5.6687 20 1 5.9892 -0.8241 5.5715 21 1 7.2453 -0.0628 3.6419 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 3.9557 0.7808 0.8908 26 1 3.9564 0.7804 -0.8892 27 1 4.2144 2.8080 -2.1250 28 1 4.9131 5.1675 -2.1319 29 1 5.3825 7.1565 -0.8393 30 1 5.2415 7.1991 0.8343 31 1 4.5542 5.2762 2.1285 32 1 3.4465 3.4645 3.2288 33 1 2.9418 2.0138 2.3293 34 1 3.7438 0.7419 5.6909 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396094551.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:20 Heat of formation + Delta-G solvation = -75.055726 kcal Electronic energy + Delta-G solvation = -18047.968190 eV Core-core repulsion = 15138.170426 eV Total energy + Delta-G solvation = -2909.797764 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03903 -38.74011 -36.01385 -34.74721 -33.07669 -31.04327 -30.80577 -27.76622 -27.13474 -25.49831 -23.31545 -21.63536 -20.66467 -19.53377 -17.09584 -16.60059 -16.33596 -16.15027 -15.87892 -15.80051 -14.60357 -14.37837 -14.05494 -13.20978 -13.00448 -12.84464 -12.55133 -12.38280 -11.99205 -11.71923 -11.45341 -11.29184 -11.01633 -10.83311 -10.43800 -10.37253 -10.30384 -10.06396 -9.77755 -9.43726 -9.32377 -8.42061 -7.84136 -6.90091 -6.03613 -4.08200 2.16373 2.28583 2.83642 3.30811 3.32863 3.37456 3.41106 4.28603 4.41176 4.66147 5.29808 5.34548 5.37967 5.45210 5.50575 5.64453 5.66589 5.78805 5.86777 6.13990 6.25380 6.43867 6.52586 6.84482 6.86639 6.97488 7.09241 7.29884 7.50444 7.61813 7.91016 7.93984 8.02757 8.15201 8.31846 8.35203 8.98287 9.55738 11.05863 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.009893 C = 0.006288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.221998 B = 2829.600118 C = 4451.741788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.364 6.364 3 C 0.466 3.534 4 O -0.503 6.503 5 C -0.065 4.065 6 C -0.137 4.137 7 C -0.062 4.062 8 C -0.224 4.224 9 C 0.212 3.788 10 N -0.885 5.885 11 C -0.199 4.199 12 C 0.029 3.971 13 C 0.047 3.953 14 C -0.512 4.512 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.893 3.107 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.272 1.272 22 H 0.095 0.905 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.133 0.867 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.108 0.892 29 H 0.391 0.609 30 H 0.394 0.606 31 H 0.115 0.885 32 H 0.027 0.973 33 H 0.028 0.972 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.089 2.252 -10.851 11.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.281 6.281 3 C 0.309 3.691 4 O -0.390 6.390 5 C -0.102 4.102 6 C -0.139 4.139 7 C -0.081 4.081 8 C -0.246 4.246 9 C 0.110 3.890 10 N -0.425 5.425 11 C -0.222 4.222 12 C 0.029 3.971 13 C 0.010 3.990 14 C -0.550 4.550 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.530 5.530 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.196 1.196 22 H 0.113 0.887 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.151 0.849 26 H 0.116 0.884 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.218 0.782 30 H 0.221 0.779 31 H 0.133 0.867 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.426 2.416 -10.686 11.048 hybrid contribution 0.650 -0.008 0.476 0.805 sum -0.776 2.408 -10.210 10.519 Atomic orbital electron populations 1.23145 0.77430 1.02967 1.02203 1.86520 1.22666 1.34295 1.84661 1.24021 0.92354 0.80913 0.71787 1.90628 1.67134 1.36299 1.44916 1.20262 0.86720 0.96725 1.06534 1.18812 1.07779 0.94110 0.93152 1.20569 0.97071 0.93887 0.96538 1.20201 1.13291 0.95565 0.95582 1.17787 0.92919 0.84275 0.94051 1.42384 1.79363 1.10132 1.10634 1.20459 1.10159 0.95911 0.95661 1.20204 0.88786 0.91946 0.96203 1.18377 0.97157 0.95335 0.88104 1.21032 0.96847 1.30470 1.06632 0.92214 1.25019 0.96021 0.96550 0.96628 1.69969 1.25650 1.41828 1.15518 0.86563 0.83004 0.79309 0.79015 1.20685 1.21194 1.19646 0.88697 0.91980 0.92508 0.84887 0.88449 0.87208 0.87388 0.78240 0.77853 0.86672 0.95519 0.95383 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.57 16 2 O -0.36 -6.40 10.56 -39.26 -0.41 -6.81 16 3 C 0.47 9.16 7.12 36.01 0.26 9.42 16 4 O -0.50 -11.12 15.78 -18.74 -0.30 -11.42 16 5 C -0.07 -1.22 5.27 -29.03 -0.15 -1.38 16 6 C -0.14 -2.77 4.38 -104.59 -0.46 -3.23 16 7 C -0.06 -1.09 9.67 -39.61 -0.38 -1.48 16 8 C -0.22 -3.76 9.90 -39.38 -0.39 -4.15 16 9 C 0.21 3.72 6.75 -83.79 -0.57 3.15 16 10 N -0.89 -11.63 9.09 32.41 0.29 -11.34 16 11 C -0.20 -4.11 9.53 -39.38 -0.38 -4.48 16 12 C 0.03 0.67 5.07 -104.65 -0.53 0.14 16 13 C 0.05 1.23 4.43 -29.03 -0.13 1.10 16 14 C -0.51 -14.00 8.29 -34.44 -0.29 -14.28 16 15 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 18 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.13 2.77 6.42 -51.93 -0.33 2.43 16 26 H 0.10 1.45 8.05 -51.93 -0.42 1.03 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.39 4.10 8.84 -40.82 -0.36 3.74 16 30 H 0.39 4.61 8.84 -40.82 -0.36 4.25 16 31 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 32 H 0.03 0.75 8.05 -51.93 -0.42 0.33 16 33 H 0.03 0.78 6.39 -51.93 -0.33 0.44 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 297.23 15.07 4.48 4.48 Total: -1.00 -32.35 297.23 -6.56 -38.92 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -4.30 Total: 7.42 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.04 Total: -12.05 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 1.03 Total: -36.70 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.71 Total: -18.23 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.35 -6.56 -38.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396094551.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.138 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds