Wall clock time and date at job start Mon Mar 30 2020 04:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 116.99943 * 2 1 4 4 O 1.20825 * 120.00047 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99990 * 179.97438 * 3 2 1 6 6 C 1.50706 * 109.47294 * 179.97438 * 5 3 2 7 7 C 1.38129 * 119.96314 * 269.73000 * 6 5 3 8 8 C 1.38889 * 119.91975 * 179.76778 * 7 6 5 9 9 N 1.39675 * 120.07306 * 180.27286 * 8 7 6 10 10 C 1.38931 * 119.85193 * 0.50419 * 8 7 6 11 11 C 1.38082 * 119.92794 * 359.74796 * 10 8 7 12 12 C 1.50700 * 119.96440 * 179.97438 * 11 10 8 13 13 C 1.50700 * 109.46772 * 270.02118 * 12 11 10 14 14 H 1.07994 * 120.00492 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99429 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99952 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00202 * 0.02562 * 15 13 12 18 18 H 1.48495 * 109.47530 * 89.99699 * 17 15 13 19 19 H 1.48506 * 109.47067 * 209.99404 * 17 15 13 20 20 H 1.48499 * 109.46967 * 329.99406 * 17 15 13 21 21 C 1.38259 * 119.95853 * 89.99984 * 6 5 3 22 22 H 1.08994 * 109.47081 * 299.99665 * 1 2 3 23 23 H 1.08993 * 109.47243 * 59.99977 * 1 2 3 24 24 H 1.08996 * 109.46820 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46665 * 60.00348 * 5 3 2 26 26 H 1.09000 * 109.47722 * 300.00680 * 5 3 2 27 27 H 1.07995 * 120.03738 * 0.02562 * 7 6 5 28 28 H 0.96999 * 120.00051 * 180.23287 * 9 8 7 29 29 H 0.97002 * 119.99654 * 0.22943 * 9 8 7 30 30 H 1.07999 * 120.03393 * 179.76942 * 10 8 7 31 31 H 1.08998 * 109.47056 * 30.02055 * 12 11 10 32 32 H 1.08998 * 109.46783 * 150.02463 * 12 11 10 33 33 H 0.96993 * 120.00145 * 179.97438 * 16 15 13 34 34 H 1.07998 * 119.93040 * 359.96561 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 3.9937 2.7200 -0.0002 7 6 4.1952 3.3792 -1.1972 8 6 4.5843 4.7125 -1.1969 9 7 4.7835 5.3838 -2.4054 10 6 4.7797 5.3756 0.0083 11 6 4.5816 4.7091 1.2013 12 6 4.7938 5.4274 2.5090 13 6 6.2269 5.2634 2.9452 14 1 6.9151 4.6956 2.3367 15 6 6.6595 5.8385 4.1213 16 7 7.9101 5.6950 4.5024 17 14 5.4691 6.8201 5.1742 18 1 4.8089 5.9156 6.1495 19 1 6.2115 7.8786 5.9049 20 1 4.4407 7.4467 4.3054 21 6 4.1889 3.3829 1.1973 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.9563 0.7806 -0.8892 26 1 3.9558 0.7808 0.8907 27 1 4.0463 2.8597 -2.1322 28 1 5.0585 6.3140 -2.4040 29 1 4.6468 4.9197 -3.2462 30 1 5.0859 6.4112 0.0120 31 1 4.5717 6.4869 2.3818 32 1 4.1330 5.0059 3.2664 33 1 8.2145 6.0998 5.3296 34 1 4.0344 2.8641 2.1318 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396104012.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:43 Heat of formation + Delta-G solvation = -94.597530 kcal Electronic energy + Delta-G solvation = -17459.529365 eV Core-core repulsion = 14548.884205 eV Total energy + Delta-G solvation = -2910.645160 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.54229 -40.23747 -37.50846 -36.04009 -35.28437 -33.90835 -31.15469 -29.32958 -28.96790 -27.63714 -24.92808 -23.07481 -21.98544 -21.03948 -18.95852 -18.60930 -17.85661 -17.67481 -17.29115 -17.03281 -16.63985 -16.19800 -15.40728 -14.90900 -14.57971 -14.45374 -14.18398 -14.07717 -13.65015 -13.52667 -12.99069 -12.91031 -12.84857 -12.45269 -12.14071 -12.06815 -11.76134 -11.70146 -11.60775 -11.44140 -11.02383 -10.78237 -9.38953 -8.30389 -8.27961 -6.33536 0.52967 0.85053 1.23533 1.35845 1.37015 1.49531 1.89333 2.35464 3.04102 3.07658 3.12235 3.68843 4.05622 4.09592 4.33370 4.35091 4.36728 4.44437 4.57138 4.63627 4.73524 4.80781 4.88030 5.03817 5.21328 5.28183 5.40731 5.47653 5.58587 5.72143 6.05516 6.10908 6.29586 6.68698 6.73599 6.79254 7.12535 7.29488 8.87181 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.005761 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.958976 B = 4859.107129 C = 5671.225189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.465 3.535 4 O -0.534 6.534 5 C -0.066 4.066 6 C -0.036 4.036 7 C -0.201 4.201 8 C 0.215 3.785 9 N -0.868 5.868 10 C -0.213 4.213 11 C -0.019 4.019 12 C 0.020 3.980 13 C -0.515 4.515 14 H 0.031 0.969 15 C 0.011 3.989 16 N -0.947 5.947 17 Si 0.947 3.053 18 H -0.265 1.265 19 H -0.280 1.280 20 H -0.251 1.251 21 C -0.181 4.181 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.134 0.866 25 H 0.148 0.852 26 H 0.130 0.870 27 H 0.144 0.856 28 H 0.403 0.597 29 H 0.408 0.592 30 H 0.112 0.888 31 H 0.027 0.973 32 H 0.025 0.975 33 H 0.268 0.732 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.981 -9.663 -13.469 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.279 6.279 3 C 0.309 3.691 4 O -0.423 6.423 5 C -0.103 4.103 6 C -0.037 4.037 7 C -0.224 4.224 8 C 0.110 3.890 9 N -0.408 5.408 10 C -0.236 4.236 11 C -0.020 4.020 12 C -0.017 4.017 13 C -0.553 4.553 14 H 0.049 0.951 15 C -0.186 4.186 16 N -0.588 5.588 17 Si 0.770 3.230 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.175 1.175 21 C -0.201 4.201 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.152 0.848 25 H 0.166 0.834 26 H 0.148 0.852 27 H 0.162 0.838 28 H 0.232 0.768 29 H 0.238 0.762 30 H 0.130 0.870 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.103 -9.351 -13.319 20.893 hybrid contribution -0.070 0.951 0.618 1.136 sum -13.173 -8.400 -12.701 20.135 Atomic orbital electron populations 1.23518 0.75093 1.05621 1.02277 1.86497 1.24760 1.32618 1.83983 1.24010 0.92461 0.81122 0.71468 1.90697 1.67899 1.37577 1.46131 1.20386 0.86667 0.94358 1.08893 1.19133 0.97433 0.94573 0.92577 1.20492 1.10300 0.93435 0.98166 1.17708 0.92905 0.91776 0.86659 1.42279 1.79039 1.15292 1.04234 1.20527 1.11006 1.00706 0.91361 1.19838 0.92752 0.94357 0.95003 1.18658 0.95489 0.95715 0.91858 1.21106 0.94651 1.32970 1.06563 0.95071 1.25917 0.96868 0.97101 0.98760 1.70045 1.17657 1.46736 1.24360 0.85701 0.79315 0.78936 0.79012 1.19001 1.20514 1.17459 1.20693 1.07087 0.94614 0.97716 0.92624 0.91994 0.84809 0.83443 0.85186 0.83822 0.76813 0.76233 0.87027 0.95497 0.95658 0.92325 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.36 -7.82 10.57 -51.37 -0.54 -8.36 16 3 C 0.47 12.28 7.95 71.24 0.57 12.84 16 4 O -0.53 -18.28 15.78 21.97 0.35 -17.93 16 5 C -0.07 -1.54 5.94 29.10 0.17 -1.36 16 6 C -0.04 -1.18 4.37 -19.88 -0.09 -1.27 16 7 C -0.20 -6.09 9.55 22.40 0.21 -5.88 16 8 C 0.21 7.04 6.75 38.21 0.26 7.29 16 9 N -0.87 -20.24 9.09 -51.37 -0.47 -20.70 16 10 C -0.21 -8.64 9.55 22.40 0.21 -8.43 16 11 C -0.02 -0.85 5.07 -19.88 -0.10 -0.95 16 12 C 0.02 1.02 4.17 29.10 0.12 1.14 16 13 C -0.51 -30.85 9.65 25.60 0.25 -30.60 16 14 H 0.03 2.07 7.98 -2.91 -0.02 2.05 16 15 C 0.01 0.63 5.47 84.65 0.46 1.10 16 16 N -0.95 -60.17 13.96 21.45 0.30 -59.87 16 17 Si 0.95 45.25 27.47 68.60 1.88 47.14 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 21 C -0.18 -7.36 9.35 22.29 0.21 -7.15 16 22 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 23 H 0.06 1.00 8.13 -2.39 -0.02 0.98 16 24 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.15 2.32 8.08 -2.39 -0.02 2.30 16 26 H 0.13 2.66 8.09 -2.39 -0.02 2.64 16 27 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.40 8.41 8.84 -92.71 -0.82 7.59 16 29 H 0.41 6.99 8.84 -92.71 -0.82 6.17 16 30 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.03 1.34 7.14 -2.39 -0.02 1.32 16 32 H 0.03 1.25 7.51 -2.39 -0.02 1.23 16 33 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 34 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -76.72 299.37 4.42 -72.30 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -0.57 Total: 19.06 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 3.47 Total: -31.62 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -0.17 Total: -80.58 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.20 Total: -26.29 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.14 kcal Total: -76.72 4.42 -72.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396104012.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.302 kcal (2) G-P(sol) polarization free energy of solvation -76.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds