Wall clock time and date at job start Mon Mar 30 2020 03:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.46951 * 2 1 4 4 C 1.34770 * 116.99707 * 179.97438 * 3 2 1 5 5 O 1.21525 * 120.00132 * 359.97438 * 4 3 2 6 6 C 1.47292 * 119.99842 * 179.97438 * 4 3 2 7 7 C 1.40446 * 120.20947 * 270.00282 * 6 4 3 8 8 N 1.38834 * 120.18456 * 359.97438 * 7 6 4 9 9 C 1.38922 * 119.63552 * 179.70586 * 7 6 4 10 10 C 1.37995 * 120.07026 * 0.27267 * 9 7 6 11 11 C 1.38577 * 120.43386 * 0.02562 * 10 9 7 12 12 C 1.37767 * 120.36382 * 359.95929 * 11 10 9 13 13 C 1.50699 * 120.03763 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47227 * 264.99944 * 13 12 11 15 15 H 1.08009 * 119.99737 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00285 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00129 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99670 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47250 * 89.99862 * 18 16 14 20 20 H 1.48501 * 109.46695 * 209.99669 * 18 16 14 21 21 H 1.48501 * 109.47182 * 329.99631 * 18 16 14 22 22 H 1.09005 * 109.46943 * 59.99923 * 1 2 3 23 23 H 1.08994 * 109.47050 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47385 * 300.00112 * 1 2 3 25 25 H 1.08998 * 109.46961 * 240.00069 * 2 1 3 26 26 H 1.09002 * 109.46670 * 119.99366 * 2 1 3 27 27 H 0.97001 * 120.00471 * 179.73281 * 8 7 6 28 28 H 0.97005 * 119.99803 * 359.45099 * 8 7 6 29 29 H 1.07998 * 119.96442 * 180.29626 * 9 7 6 30 30 H 1.07996 * 119.77960 * 180.02562 * 10 9 7 31 31 H 1.08004 * 119.81599 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.47572 * 25.00130 * 13 12 11 33 33 H 1.08999 * 109.47095 * 145.00369 * 13 12 11 34 34 H 0.96994 * 119.99608 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3501 1.5456 0.0005 5 8 4.0904 0.5818 0.0015 6 6 3.9131 2.9067 0.0000 7 6 4.1837 3.5590 -1.2140 8 7 3.9226 2.9243 -2.4208 9 6 4.7089 4.8450 -1.2006 10 6 4.9677 5.4737 0.0003 11 6 4.7076 4.8304 1.1998 12 6 4.1864 3.5552 1.2074 13 6 3.9059 2.8627 2.5161 14 6 5.0818 1.9969 2.8886 15 1 5.9458 1.9522 2.2420 16 6 5.0543 1.2610 4.0542 17 7 6.0803 0.5051 4.3790 18 14 3.5591 1.3366 5.1714 19 1 2.5915 0.2820 4.7755 20 1 3.9810 1.1183 6.5784 21 1 2.9162 2.6696 5.0485 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 4.1068 3.3787 -3.2577 28 1 3.5596 2.0247 -2.4271 29 1 4.9145 5.3534 -2.1310 30 1 5.3756 6.4737 0.0052 31 1 4.9143 5.3317 2.1338 32 1 3.7428 3.6084 3.2942 33 1 3.0154 2.2422 2.4152 34 1 6.0611 -0.0123 5.1992 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396122901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:49 Heat of formation + Delta-G solvation = -70.287820 kcal Electronic energy + Delta-G solvation = -18307.147465 eV Core-core repulsion = 15397.556453 eV Total energy + Delta-G solvation = -2909.591012 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.15589 -38.49212 -35.90616 -34.83482 -33.01617 -31.74037 -31.16732 -28.94072 -27.43497 -24.31271 -23.00611 -22.30293 -20.60778 -20.08641 -17.51590 -16.90801 -16.73333 -16.37247 -16.08374 -15.70640 -14.33759 -14.19734 -14.13829 -13.34343 -13.25428 -12.95725 -12.82209 -12.57655 -12.20056 -11.80931 -11.62945 -11.46493 -11.33085 -11.14423 -10.59214 -10.46131 -10.14974 -10.09912 -9.90011 -9.74251 -9.32771 -8.53892 -8.13776 -7.21400 -6.01782 -4.00570 1.70150 2.10064 2.77098 3.20166 3.29749 3.37043 3.39649 4.00626 4.29271 4.44259 5.08904 5.10345 5.23148 5.24985 5.31462 5.46424 5.56089 5.78930 5.87353 5.92233 5.95626 6.04996 6.11293 6.47178 6.53572 6.73979 6.88486 6.95265 6.99203 7.25080 7.45730 7.65911 7.71820 7.84996 8.35153 8.52813 9.05531 9.57094 11.11342 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.010180 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.663776 B = 2749.912394 C = 3891.490245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.359 6.359 4 C 0.525 3.475 5 O -0.480 6.480 6 C -0.188 4.188 7 C 0.250 3.750 8 N -0.873 5.873 9 C -0.223 4.223 10 C -0.052 4.052 11 C -0.181 4.181 12 C 0.055 3.945 13 C 0.007 3.993 14 C -0.506 4.506 15 H 0.077 0.923 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.871 3.129 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.263 1.263 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.398 0.602 28 H 0.394 0.606 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.037 0.963 33 H 0.021 0.979 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.321 5.527 -11.723 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.277 6.277 4 C 0.367 3.633 5 O -0.364 6.364 6 C -0.194 4.194 7 C 0.145 3.855 8 N -0.412 5.412 9 C -0.246 4.246 10 C -0.071 4.071 11 C -0.200 4.200 12 C 0.054 3.946 13 C -0.030 4.030 14 C -0.544 4.544 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.534 5.534 18 Si 0.698 3.302 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.188 1.188 22 H 0.082 0.918 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.227 0.773 28 H 0.222 0.778 29 H 0.137 0.863 30 H 0.138 0.862 31 H 0.143 0.857 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.035 5.079 -11.543 15.513 hybrid contribution -0.656 -0.531 0.367 0.920 sum -9.691 4.548 -11.176 15.476 Atomic orbital electron populations 1.21780 0.93073 1.02534 1.03285 1.22968 0.94979 0.81152 1.02620 1.86676 1.24917 1.31411 1.84691 1.20983 0.80096 0.90046 0.72148 1.90879 1.60154 1.42251 1.43149 1.18315 1.14203 0.93600 0.93291 1.17475 0.92099 0.91284 0.84644 1.42235 1.74225 1.19557 1.05159 1.20267 1.11323 0.94487 0.98523 1.20938 0.95529 0.98723 0.91918 1.20744 1.05890 0.95396 0.98013 1.20033 0.88732 0.91891 0.93978 1.18952 0.98095 0.96073 0.89894 1.20809 1.01743 1.24806 1.07033 0.90479 1.24942 0.95852 0.94781 0.97381 1.69895 1.30187 1.28632 1.24682 0.86910 0.83767 0.79173 0.80368 1.20274 1.21061 1.18782 0.91816 0.90577 0.91470 0.91702 0.90963 0.77334 0.77819 0.86297 0.86229 0.85698 0.94504 0.96092 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.29 37.16 0.38 -1.35 16 2 C 0.06 0.89 6.20 37.16 0.23 1.12 16 3 O -0.36 -6.80 10.23 -40.68 -0.42 -7.21 16 4 C 0.53 11.40 4.69 34.41 0.16 11.56 16 5 O -0.48 -11.89 16.90 -19.28 -0.33 -12.22 16 6 C -0.19 -3.94 5.77 -104.82 -0.60 -4.54 16 7 C 0.25 4.28 6.77 -83.61 -0.57 3.71 16 8 N -0.87 -11.68 8.99 32.55 0.29 -11.39 16 9 C -0.22 -3.37 9.88 -39.42 -0.39 -3.75 16 10 C -0.05 -0.81 10.03 -39.55 -0.40 -1.21 16 11 C -0.18 -3.40 9.65 -39.63 -0.38 -3.78 16 12 C 0.05 1.20 5.10 -104.23 -0.53 0.67 16 13 C 0.01 0.17 3.70 -29.03 -0.11 0.07 16 14 C -0.51 -14.98 9.65 -34.44 -0.33 -15.32 16 15 H 0.08 2.54 7.98 -52.48 -0.42 2.12 16 16 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 18 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.40 3.92 8.84 -40.82 -0.36 3.56 16 28 H 0.39 5.34 7.68 -40.82 -0.31 5.03 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.13 2.19 8.06 -52.48 -0.42 1.77 16 32 H 0.04 0.89 7.11 -51.93 -0.37 0.52 16 33 H 0.02 0.53 6.69 -51.93 -0.35 0.19 16 34 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 296.98 15.07 4.48 4.48 Total: -1.00 -34.75 296.98 -6.86 -41.62 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.36 Total: 5.76 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -2.63 Total: -10.76 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 1.07 Total: -38.96 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.74 Total: -19.43 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.75 -6.86 -41.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396122901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.672 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds