Wall clock time and date at job start Mon Mar 30 2020 03:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.46951 * 2 1 4 4 C 1.34770 * 116.99707 * 179.97438 * 3 2 1 5 5 O 1.21525 * 120.00132 * 359.97438 * 4 3 2 6 6 C 1.47292 * 119.99842 * 179.97438 * 4 3 2 7 7 C 1.40446 * 120.20947 * 270.00282 * 6 4 3 8 8 N 1.38834 * 120.18456 * 359.97438 * 7 6 4 9 9 C 1.38922 * 119.63552 * 179.70586 * 7 6 4 10 10 C 1.37995 * 120.07026 * 0.27267 * 9 7 6 11 11 C 1.38577 * 120.43386 * 0.02562 * 10 9 7 12 12 C 1.37767 * 120.36382 * 359.95929 * 11 10 9 13 13 C 1.50699 * 120.03763 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47227 * 264.99944 * 13 12 11 15 15 H 1.08009 * 119.99737 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00285 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00129 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99670 * 0.02562 * 16 14 13 19 19 H 1.48502 * 109.47250 * 89.99862 * 18 16 14 20 20 H 1.48501 * 109.46695 * 209.99669 * 18 16 14 21 21 H 1.48501 * 109.47182 * 329.99631 * 18 16 14 22 22 H 1.09005 * 109.46943 * 59.99923 * 1 2 3 23 23 H 1.08994 * 109.47050 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47385 * 300.00112 * 1 2 3 25 25 H 1.08998 * 109.46961 * 240.00069 * 2 1 3 26 26 H 1.09002 * 109.46670 * 119.99366 * 2 1 3 27 27 H 0.97001 * 120.00471 * 179.73281 * 8 7 6 28 28 H 0.97005 * 119.99803 * 359.45099 * 8 7 6 29 29 H 1.07998 * 119.96442 * 180.29626 * 9 7 6 30 30 H 1.07996 * 119.77960 * 180.02562 * 10 9 7 31 31 H 1.08004 * 119.81599 * 179.97438 * 11 10 9 32 32 H 1.08997 * 109.47572 * 25.00130 * 13 12 11 33 33 H 1.08999 * 109.47095 * 145.00369 * 13 12 11 34 34 H 0.96994 * 119.99608 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3501 1.5456 0.0005 5 8 4.0904 0.5818 0.0015 6 6 3.9131 2.9067 0.0000 7 6 4.1837 3.5590 -1.2140 8 7 3.9226 2.9243 -2.4208 9 6 4.7089 4.8450 -1.2006 10 6 4.9677 5.4737 0.0003 11 6 4.7076 4.8304 1.1998 12 6 4.1864 3.5552 1.2074 13 6 3.9059 2.8627 2.5161 14 6 5.0818 1.9969 2.8886 15 1 5.9458 1.9522 2.2420 16 6 5.0543 1.2610 4.0542 17 7 6.0803 0.5051 4.3790 18 14 3.5591 1.3366 5.1714 19 1 2.5915 0.2820 4.7755 20 1 3.9810 1.1183 6.5784 21 1 2.9162 2.6696 5.0485 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 4.1068 3.3787 -3.2577 28 1 3.5596 2.0247 -2.4271 29 1 4.9145 5.3534 -2.1310 30 1 5.3756 6.4737 0.0052 31 1 4.9143 5.3317 2.1338 32 1 3.7428 3.6084 3.2942 33 1 3.0154 2.2422 2.4152 34 1 6.0611 -0.0123 5.1992 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396122901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:49 Heat of formation + Delta-G solvation = -94.367876 kcal Electronic energy + Delta-G solvation = -18308.191655 eV Core-core repulsion = 15397.556453 eV Total energy + Delta-G solvation = -2910.635202 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.70886 -39.90719 -37.52040 -36.31958 -34.90984 -33.33334 -32.53104 -30.48751 -29.06519 -25.80365 -24.77312 -23.59571 -22.12575 -21.63848 -19.08252 -18.93380 -18.27549 -17.88478 -17.47253 -17.04382 -16.29819 -15.63550 -15.50522 -15.01668 -14.67085 -14.55207 -14.24064 -14.01303 -13.62435 -13.62062 -13.14483 -12.92474 -12.73305 -12.54654 -12.41538 -12.16997 -11.85121 -11.71283 -11.55883 -11.37378 -11.31646 -10.83380 -9.63624 -8.49086 -8.32701 -6.37489 0.31308 0.71627 1.11016 1.28327 1.30347 1.42662 1.77861 2.29775 2.83914 2.92065 3.00541 3.81498 3.93176 3.96339 4.06661 4.21585 4.29289 4.55061 4.58069 4.65956 4.80170 4.87395 4.89262 5.02029 5.08489 5.13083 5.24775 5.39000 5.49587 5.61710 5.86427 5.96003 6.21413 6.41208 6.67150 6.73263 6.86855 7.24011 8.84500 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015730 B = 0.010180 C = 0.007193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.663776 B = 2749.912394 C = 3891.490245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.045 3.955 3 O -0.358 6.358 4 C 0.529 3.471 5 O -0.528 6.528 6 C -0.226 4.226 7 C 0.250 3.750 8 N -0.858 5.858 9 C -0.209 4.209 10 C -0.039 4.039 11 C -0.196 4.196 12 C 0.014 3.986 13 C 0.016 3.984 14 C -0.509 4.509 15 H 0.023 0.977 16 C 0.008 3.992 17 N -0.946 5.946 18 Si 0.942 3.058 19 H -0.272 1.272 20 H -0.274 1.274 21 H -0.238 1.238 22 H 0.080 0.920 23 H 0.104 0.896 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.418 0.582 28 H 0.393 0.607 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.130 0.870 32 H 0.047 0.953 33 H 0.011 0.989 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.173 7.699 -13.164 18.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 O -0.275 6.275 4 C 0.374 3.626 5 O -0.417 6.417 6 C -0.232 4.232 7 C 0.143 3.857 8 N -0.397 5.397 9 C -0.231 4.231 10 C -0.057 4.057 11 C -0.216 4.216 12 C 0.013 3.987 13 C -0.021 4.021 14 C -0.547 4.547 15 H 0.041 0.959 16 C -0.189 4.189 17 N -0.587 5.587 18 Si 0.765 3.235 19 H -0.198 1.198 20 H -0.199 1.199 21 H -0.162 1.162 22 H 0.099 0.901 23 H 0.122 0.878 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.250 0.750 28 H 0.221 0.779 29 H 0.183 0.817 30 H 0.182 0.818 31 H 0.148 0.852 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.915 7.280 -13.034 18.494 hybrid contribution -0.020 -1.200 0.641 1.360 sum -10.935 6.081 -12.394 17.611 Atomic orbital electron populations 1.21809 0.89384 1.04589 1.03880 1.23351 0.97834 0.79627 1.02064 1.86680 1.23527 1.33344 1.83930 1.21328 0.80558 0.90134 0.70608 1.90841 1.61303 1.43826 1.45692 1.18501 1.16386 0.93579 0.94745 1.17678 0.91521 0.92086 0.84445 1.42200 1.73071 1.19447 1.04986 1.20828 1.08669 0.93276 1.00346 1.21402 0.93537 1.00194 0.90557 1.20927 1.06152 0.94484 0.99998 1.19900 0.92248 0.93698 0.92858 1.18732 0.95467 0.95481 0.92431 1.20951 1.01749 1.25840 1.06199 0.95861 1.25967 0.99487 0.94185 0.99303 1.70061 1.32875 1.30019 1.25700 0.85778 0.79290 0.80456 0.78017 1.19754 1.19879 1.16150 0.90108 0.87762 0.91922 0.90413 0.93542 0.74961 0.77944 0.81717 0.81751 0.85245 0.93531 0.97072 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 10.29 71.98 0.74 -2.24 16 2 C 0.04 1.41 6.20 71.98 0.45 1.86 16 3 O -0.36 -13.75 10.23 -56.81 -0.58 -14.33 16 4 C 0.53 23.75 4.69 70.20 0.33 24.08 16 5 O -0.53 -27.69 16.90 19.76 0.33 -27.36 16 6 C -0.23 -9.55 5.77 -19.99 -0.12 -9.67 16 7 C 0.25 8.08 6.77 38.74 0.26 8.34 16 8 N -0.86 -21.03 8.99 -50.93 -0.46 -21.49 16 9 C -0.21 -5.44 9.88 22.38 0.22 -5.22 16 10 C -0.04 -1.05 10.03 22.29 0.22 -0.83 16 11 C -0.20 -7.16 9.65 22.24 0.21 -6.95 16 12 C 0.01 0.62 5.10 -19.61 -0.10 0.52 16 13 C 0.02 0.83 3.70 29.10 0.11 0.93 16 14 C -0.51 -31.75 9.65 25.60 0.25 -31.51 16 15 H 0.02 1.64 7.98 -2.91 -0.02 1.62 16 16 C 0.01 0.47 5.47 84.65 0.46 0.93 16 17 N -0.95 -62.57 13.96 21.45 0.30 -62.27 16 18 Si 0.94 46.14 27.47 68.60 1.88 48.02 16 19 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.24 -10.63 6.54 99.48 0.65 -9.97 16 22 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.42 6.75 8.84 -92.71 -0.82 5.93 16 28 H 0.39 10.20 7.68 -92.70 -0.71 9.48 16 29 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 32 H 0.05 2.25 7.11 -2.39 -0.02 2.23 16 33 H 0.01 0.58 6.69 -2.39 -0.02 0.57 16 34 H 0.27 16.35 8.31 -92.71 -0.77 15.58 16 Total: -1.00 -81.68 296.98 4.06 -77.62 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -0.46 Total: 19.55 kcal Atomic # 6 Polarization: -22.79 SS G_CDS: 3.04 Total: -19.75 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -0.16 Total: -83.76 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.25 Total: -41.69 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.88 Total: 48.02 kcal Total: -81.68 4.06 -77.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396122901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.747 kcal (2) G-P(sol) polarization free energy of solvation -81.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds