Wall clock time and date at job start Mon Mar 30 2020 03:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47375 * 2 1 4 4 C 1.34757 * 117.00191 * 180.02562 * 3 2 1 5 5 O 1.21517 * 120.00348 * 359.97438 * 4 3 2 6 6 C 1.47383 * 119.99950 * 179.97438 * 4 3 2 7 7 C 1.39855 * 120.07406 * 359.97438 * 6 4 3 8 8 C 1.36580 * 120.04943 * 180.02562 * 7 6 4 9 9 C 1.39237 * 120.20013 * 359.76335 * 8 7 6 10 10 N 1.39010 * 119.92442 * 180.28279 * 9 8 7 11 11 C 1.39238 * 120.15198 * 0.50976 * 9 8 7 12 12 C 1.50698 * 120.02774 * 179.74564 * 11 9 8 13 13 C 1.50697 * 109.46993 * 84.72865 * 12 11 9 14 14 H 1.07991 * 120.00449 * 359.72131 * 13 12 11 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 C 1.37650 * 119.94196 * 359.46854 * 11 9 8 22 22 H 1.08995 * 109.47301 * 59.99301 * 1 2 3 23 23 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46947 * 299.99720 * 1 2 3 25 25 H 1.09004 * 109.46947 * 240.00280 * 2 1 3 26 26 H 1.09002 * 109.47069 * 120.00398 * 2 1 3 27 27 H 1.07999 * 119.97832 * 0.02562 * 7 6 4 28 28 H 1.07997 * 119.89351 * 180.02562 * 8 7 6 29 29 H 0.96999 * 120.00038 * 180.23760 * 10 9 8 30 30 H 0.97001 * 119.99914 * 0.22121 * 10 9 8 31 31 H 1.08998 * 109.47083 * 324.72281 * 12 11 9 32 32 H 1.09001 * 109.46875 * 204.72544 * 12 11 9 33 33 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 34 34 H 1.07995 * 120.09335 * 180.24915 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0903 0.5818 -0.0005 6 6 3.9133 2.9074 -0.0011 7 6 3.0628 4.0176 -0.0017 8 6 3.5854 5.2795 -0.0028 9 6 4.9652 5.4661 0.0016 10 7 5.4909 6.7530 0.0064 11 6 5.8197 4.3668 -0.0035 12 6 7.3126 4.5721 -0.0045 13 6 7.7942 4.7645 1.4104 14 1 7.0891 4.7450 2.2282 15 6 9.1344 4.9706 1.6605 16 7 9.9931 4.9939 0.6647 17 14 9.7302 5.2168 3.4137 18 1 9.3943 4.0183 4.2236 19 1 11.2016 5.4178 3.4127 20 1 9.0684 6.4108 3.9983 21 6 5.2996 3.0923 -0.0020 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.9920 3.8771 -0.0013 28 1 2.9263 6.1350 -0.0028 29 1 6.4519 6.8843 0.0060 30 1 4.8966 7.5196 0.0100 31 1 7.5576 5.4550 -0.5950 32 1 7.7992 3.6985 -0.4383 33 1 10.9360 5.1385 0.8407 34 1 5.9601 2.2379 -0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396123365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:25 Heat of formation + Delta-G solvation = -79.634799 kcal Electronic energy + Delta-G solvation = -17464.897843 eV Core-core repulsion = 14554.901515 eV Total energy + Delta-G solvation = -2909.996328 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.12926 -38.75466 -36.23118 -34.19474 -33.30491 -31.73411 -31.21498 -28.83216 -27.07344 -23.96382 -23.35564 -22.33089 -21.20820 -19.91194 -17.30449 -16.75202 -16.33599 -16.27826 -16.22560 -16.05952 -14.57663 -14.01097 -13.81410 -13.54750 -13.17431 -12.88080 -12.81821 -12.65650 -12.16195 -11.92246 -11.79756 -11.54966 -11.22038 -10.96226 -10.60532 -10.48530 -10.40024 -10.14790 -10.06728 -9.61901 -9.48111 -8.46266 -8.18174 -6.95454 -6.07125 -4.12395 1.44560 2.09178 2.96677 3.12585 3.29411 3.34314 3.38094 4.35595 4.42440 4.54848 4.89655 4.92444 5.11046 5.24514 5.25711 5.36706 5.49334 5.67194 5.70515 5.87438 5.91307 6.08983 6.28017 6.57141 6.63087 6.82126 6.87710 7.02871 7.33437 7.49949 7.69701 7.87623 7.99882 8.19985 8.28011 8.31021 8.93337 9.52375 11.01112 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027678 B = 0.005177 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.389520 B = 5407.364444 C = 5955.747600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.360 6.360 4 C 0.516 3.484 5 O -0.522 6.522 6 C -0.205 4.205 7 C -0.031 4.031 8 C -0.225 4.225 9 C 0.258 3.742 10 N -0.857 5.857 11 C -0.131 4.131 12 C 0.058 3.942 13 C -0.514 4.514 14 H 0.056 0.944 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.009 4.009 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.413 0.587 30 H 0.390 0.610 31 H 0.025 0.975 32 H 0.031 0.969 33 H 0.263 0.737 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.991 -1.689 -2.294 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.278 6.278 4 C 0.364 3.636 5 O -0.413 6.413 6 C -0.208 4.208 7 C -0.050 4.050 8 C -0.248 4.248 9 C 0.149 3.851 10 N -0.394 5.394 11 C -0.135 4.135 12 C 0.022 3.978 13 C -0.552 4.552 14 H 0.075 0.925 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.029 4.029 22 H 0.084 0.916 23 H 0.094 0.906 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.246 0.754 30 H 0.217 0.783 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.588 -1.981 -2.335 15.886 hybrid contribution 0.552 0.300 1.042 1.216 sum -15.036 -1.682 -1.294 15.185 Atomic orbital electron populations 1.21789 0.92997 1.02625 1.03382 1.22921 0.94957 0.80937 1.02422 1.86550 1.24807 1.31473 1.84986 1.21291 0.79802 0.90362 0.72184 1.90802 1.60233 1.42787 1.47442 1.18688 0.93957 0.88915 1.19237 1.20614 0.98892 0.91252 0.94287 1.20171 0.92912 0.97371 1.14344 1.17970 0.91740 0.86001 0.89377 1.42648 1.11226 1.03836 1.81677 1.20122 0.98593 0.90483 1.04329 1.18139 0.84203 0.98010 0.97493 1.21065 0.92486 1.49529 0.92107 0.92547 1.25009 0.96821 0.95291 0.97089 1.69943 1.02803 1.49563 1.30883 0.86622 0.77490 0.78800 0.84922 1.20130 1.21280 1.20286 1.20924 0.92277 0.97316 0.92336 0.91589 0.90550 0.91576 0.91496 0.91473 0.85798 0.86422 0.75429 0.78271 0.95695 0.95058 0.92757 0.85127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.29 37.16 0.38 -0.88 16 2 C 0.06 0.74 6.20 37.16 0.23 0.97 16 3 O -0.36 -5.46 9.46 -40.65 -0.38 -5.85 16 4 C 0.52 9.39 7.89 34.45 0.27 9.67 16 5 O -0.52 -10.78 16.13 -19.28 -0.31 -11.09 16 6 C -0.20 -3.79 5.88 -104.97 -0.62 -4.41 16 7 C -0.03 -0.50 9.56 -39.58 -0.38 -0.88 16 8 C -0.23 -3.54 9.82 -39.81 -0.39 -3.93 16 9 C 0.26 4.71 6.73 -83.86 -0.56 4.14 16 10 N -0.86 -13.64 8.96 32.41 0.29 -13.35 16 11 C -0.13 -2.79 5.08 -104.47 -0.53 -3.32 16 12 C 0.06 1.45 4.52 -29.04 -0.13 1.31 16 13 C -0.51 -13.84 9.09 -34.44 -0.31 -14.15 16 14 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.59 13.29 55.43 0.74 -24.86 16 17 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 21 C -0.01 -0.19 9.22 -39.19 -0.36 -0.55 16 22 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.12 1.66 7.60 -52.49 -0.40 1.26 16 28 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.41 7.29 6.91 -40.82 -0.28 7.01 16 30 H 0.39 4.74 8.83 -40.82 -0.36 4.38 16 31 H 0.02 0.62 6.83 -51.93 -0.35 0.27 16 32 H 0.03 0.83 8.05 -51.93 -0.42 0.42 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.13 2.84 7.64 -52.49 -0.40 2.43 16 LS Contribution 299.08 15.07 4.51 4.51 Total: -1.00 -30.69 299.08 -6.97 -37.66 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.29 Total: 7.27 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.50 Total: -10.48 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 1.03 Total: -38.21 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.70 Total: -16.94 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.69 -6.97 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396123365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.970 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds