Wall clock time and date at job start Mon Mar 30 2020 03:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47375 * 2 1 4 4 C 1.34757 * 117.00191 * 180.02562 * 3 2 1 5 5 O 1.21517 * 120.00348 * 359.97438 * 4 3 2 6 6 C 1.47383 * 119.99950 * 179.97438 * 4 3 2 7 7 C 1.39855 * 120.07406 * 359.97438 * 6 4 3 8 8 C 1.36580 * 120.04943 * 180.02562 * 7 6 4 9 9 C 1.39237 * 120.20013 * 359.76335 * 8 7 6 10 10 N 1.39010 * 119.92442 * 180.28279 * 9 8 7 11 11 C 1.39238 * 120.15198 * 0.50976 * 9 8 7 12 12 C 1.50698 * 120.02774 * 179.74564 * 11 9 8 13 13 C 1.50697 * 109.46993 * 84.72865 * 12 11 9 14 14 H 1.07991 * 120.00449 * 359.72131 * 13 12 11 15 15 C 1.37885 * 119.99686 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48498 * 109.47416 * 59.99812 * 17 15 13 19 19 H 1.48508 * 109.46609 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46903 * 299.99397 * 17 15 13 21 21 C 1.37650 * 119.94196 * 359.46854 * 11 9 8 22 22 H 1.08995 * 109.47301 * 59.99301 * 1 2 3 23 23 H 1.08999 * 109.47119 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46947 * 299.99720 * 1 2 3 25 25 H 1.09004 * 109.46947 * 240.00280 * 2 1 3 26 26 H 1.09002 * 109.47069 * 120.00398 * 2 1 3 27 27 H 1.07999 * 119.97832 * 0.02562 * 7 6 4 28 28 H 1.07997 * 119.89351 * 180.02562 * 8 7 6 29 29 H 0.96999 * 120.00038 * 180.23760 * 10 9 8 30 30 H 0.97001 * 119.99914 * 0.22121 * 10 9 8 31 31 H 1.08998 * 109.47083 * 324.72281 * 12 11 9 32 32 H 1.09001 * 109.46875 * 204.72544 * 12 11 9 33 33 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 34 34 H 1.07995 * 120.09335 * 180.24915 * 21 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3500 1.5455 -0.0005 5 8 4.0903 0.5818 -0.0005 6 6 3.9133 2.9074 -0.0011 7 6 3.0628 4.0176 -0.0017 8 6 3.5854 5.2795 -0.0028 9 6 4.9652 5.4661 0.0016 10 7 5.4909 6.7530 0.0064 11 6 5.8197 4.3668 -0.0035 12 6 7.3126 4.5721 -0.0045 13 6 7.7942 4.7645 1.4104 14 1 7.0891 4.7450 2.2282 15 6 9.1344 4.9706 1.6605 16 7 9.9931 4.9939 0.6647 17 14 9.7302 5.2168 3.4137 18 1 9.3943 4.0183 4.2236 19 1 11.2016 5.4178 3.4127 20 1 9.0684 6.4108 3.9983 21 6 5.2996 3.0923 -0.0020 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.9920 3.8771 -0.0013 28 1 2.9263 6.1350 -0.0028 29 1 6.4519 6.8843 0.0060 30 1 4.8966 7.5196 0.0100 31 1 7.5576 5.4550 -0.5950 32 1 7.7992 3.6985 -0.4383 33 1 10.9360 5.1385 0.8407 34 1 5.9601 2.2379 -0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396123365.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:25 Heat of formation + Delta-G solvation = -98.325442 kcal Electronic energy + Delta-G solvation = -17465.708330 eV Core-core repulsion = 14554.901515 eV Total energy + Delta-G solvation = -2910.806815 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.49640 -40.17312 -37.55098 -35.72865 -35.13081 -33.08771 -32.49956 -30.24195 -28.87618 -25.37691 -25.04055 -23.42442 -22.68978 -21.34446 -18.71464 -18.45997 -18.08058 -17.65221 -17.48047 -17.37268 -16.51141 -15.14602 -15.10744 -14.96166 -14.58352 -14.50432 -14.22208 -13.74900 -13.55628 -13.54919 -13.08316 -12.87735 -12.78632 -12.48253 -12.45986 -12.22146 -11.58235 -11.54386 -11.52577 -11.45749 -11.31093 -10.58689 -9.69186 -8.43233 -8.12199 -6.30639 0.01060 0.65549 1.39737 1.42311 1.49950 1.69797 1.75387 2.40581 3.02414 3.11620 3.14147 3.87558 4.02166 4.04984 4.14404 4.15218 4.39191 4.47527 4.60039 4.81283 4.87522 4.97622 5.12038 5.17716 5.20512 5.38662 5.40484 5.49299 5.51883 5.75020 5.84414 5.97555 6.20185 6.59535 6.80966 6.83578 7.07969 7.37999 8.89997 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027678 B = 0.005177 C = 0.004700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.389520 B = 5407.364444 C = 5955.747600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.352 6.352 4 C 0.518 3.482 5 O -0.558 6.558 6 C -0.219 4.219 7 C -0.013 4.013 8 C -0.210 4.210 9 C 0.258 3.742 10 N -0.847 5.847 11 C -0.164 4.164 12 C 0.070 3.930 13 C -0.522 4.522 14 H 0.051 0.949 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.958 3.042 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.264 1.264 21 C -0.025 4.025 22 H 0.072 0.928 23 H 0.100 0.900 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.405 0.595 30 H 0.411 0.589 31 H 0.017 0.983 32 H -0.007 1.007 33 H 0.265 0.735 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.928 -0.453 -1.459 18.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.269 6.269 4 C 0.367 3.633 5 O -0.452 6.452 6 C -0.222 4.222 7 C -0.031 4.031 8 C -0.233 4.233 9 C 0.147 3.853 10 N -0.383 5.383 11 C -0.168 4.168 12 C 0.032 3.968 13 C -0.560 4.560 14 H 0.069 0.931 15 C -0.189 4.189 16 N -0.567 5.567 17 Si 0.783 3.217 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.188 1.188 21 C -0.044 4.044 22 H 0.091 0.909 23 H 0.119 0.881 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.178 0.822 28 H 0.181 0.819 29 H 0.235 0.765 30 H 0.242 0.758 31 H 0.035 0.965 32 H 0.011 0.989 33 H 0.073 0.927 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.573 -0.710 -1.502 18.647 hybrid contribution 1.375 -0.113 0.735 1.563 sum -17.198 -0.823 -0.767 17.235 Atomic orbital electron populations 1.21808 0.89697 1.04429 1.03927 1.23314 0.97432 0.79285 1.02266 1.86528 1.22653 1.33520 1.84218 1.21284 0.80682 0.89852 0.71444 1.90782 1.61326 1.43824 1.49228 1.18755 0.93173 0.90303 1.20009 1.21002 1.00245 0.90265 0.91624 1.20584 0.91885 0.98794 1.12014 1.18090 0.92665 0.85707 0.88823 1.42608 1.11168 1.03920 1.80636 1.19807 0.96914 0.92063 1.08026 1.17856 0.86943 0.95795 0.96158 1.21307 0.92682 1.49062 0.92937 0.93114 1.25818 0.97001 0.95013 1.01051 1.70061 1.03081 1.50561 1.32965 0.85606 0.77130 0.78921 0.80010 1.20284 1.20782 1.18833 1.20743 0.93511 0.96358 0.93820 0.90929 0.88129 0.91073 0.91654 0.91857 0.82173 0.81907 0.76484 0.75808 0.96483 0.98864 0.92654 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 10.29 71.98 0.74 -1.20 16 2 C 0.05 1.13 6.20 71.98 0.45 1.58 16 3 O -0.35 -10.06 9.46 -56.67 -0.54 -10.60 16 4 C 0.52 18.80 7.89 70.23 0.55 19.36 16 5 O -0.56 -23.81 16.13 19.78 0.32 -23.49 16 6 C -0.22 -8.00 5.88 -20.09 -0.12 -8.12 16 7 C -0.01 -0.36 9.56 22.27 0.21 -0.14 16 8 C -0.21 -5.78 9.82 22.12 0.22 -5.56 16 9 C 0.26 9.01 6.73 38.48 0.26 9.27 16 10 N -0.85 -25.48 8.96 -51.38 -0.46 -25.94 16 11 C -0.16 -7.16 5.08 -19.76 -0.10 -7.26 16 12 C 0.07 3.62 4.52 29.10 0.13 3.75 16 13 C -0.52 -28.94 9.09 25.60 0.23 -28.70 16 14 H 0.05 2.81 7.74 -2.92 -0.02 2.79 16 15 C 0.01 0.54 5.46 84.66 0.46 1.00 16 16 N -0.93 -54.60 13.29 21.45 0.28 -54.31 16 17 Si 0.96 43.84 29.54 68.60 2.03 45.86 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 21 C -0.02 -1.07 9.22 22.52 0.21 -0.86 16 22 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.16 3.46 7.60 -2.91 -0.02 3.43 16 28 H 0.16 3.07 8.06 -2.91 -0.02 3.05 16 29 H 0.40 14.11 6.91 -92.71 -0.64 13.47 16 30 H 0.41 8.70 8.83 -92.71 -0.82 7.88 16 31 H 0.02 0.89 6.83 -2.39 -0.02 0.88 16 32 H -0.01 -0.41 8.05 -2.39 -0.02 -0.43 16 33 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.10 4.86 7.64 -2.91 -0.02 4.84 16 Total: -1.00 -69.00 299.08 4.55 -64.45 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: -0.33 Total: 20.93 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 3.25 Total: -16.90 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -0.18 Total: -80.25 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.22 Total: -34.09 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -69.00 4.55 -64.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396123365.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.876 kcal (2) G-P(sol) polarization free energy of solvation -68.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds