Wall clock time and date at job start Mon Mar 30 2020 03:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45204 * 109.46943 * 2 1 4 4 C 1.34711 * 116.99837 * 179.97438 * 3 2 1 5 5 O 1.21475 * 119.99578 * 0.02562 * 4 3 2 6 6 C 1.47738 * 120.00100 * 180.02562 * 4 3 2 7 7 C 1.39664 * 120.11487 * 353.95044 * 6 4 3 8 8 C 1.37966 * 120.00025 * 180.02562 * 7 6 4 9 9 C 1.38258 * 120.23285 * 359.97438 * 8 7 6 10 10 C 1.38982 * 120.23267 * 0.27965 * 9 8 7 11 11 N 1.39710 * 120.00345 * 179.72515 * 10 9 8 12 12 C 1.38676 * 119.99376 * 359.44284 * 10 9 8 13 13 C 1.50701 * 120.11670 * 180.29387 * 12 10 9 14 14 C 1.50696 * 109.47199 * 264.44918 * 13 12 10 15 15 H 1.08002 * 120.00170 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99918 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99965 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00104 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47070 * 89.99986 * 18 16 14 20 20 H 1.48494 * 109.47124 * 209.99996 * 18 16 14 21 21 H 1.48500 * 109.46963 * 329.99818 * 18 16 14 22 22 H 1.08998 * 109.47068 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46761 * 300.00025 * 1 2 3 24 24 H 1.09000 * 109.47184 * 59.99444 * 1 2 3 25 25 H 1.09007 * 109.46834 * 240.00648 * 2 1 3 26 26 H 1.09000 * 109.47184 * 120.00556 * 2 1 3 27 27 H 1.07995 * 120.00018 * 0.04045 * 7 6 4 28 28 H 1.08004 * 119.88347 * 179.97438 * 8 7 6 29 29 H 1.08007 * 119.88351 * 180.02562 * 9 8 7 30 30 H 0.96998 * 119.99860 * 359.97438 * 11 10 9 31 31 H 0.97003 * 120.00049 * 179.97438 * 11 10 9 32 32 H 1.09002 * 109.46888 * 24.45023 * 13 12 10 33 33 H 1.08991 * 109.47127 * 144.44643 * 13 12 10 34 34 H 0.97004 * 120.00230 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0894 0.5821 0.0005 6 6 3.9142 2.9107 0.0011 7 6 3.0719 4.0175 -0.1262 8 6 3.6019 5.2913 -0.1258 9 6 4.9660 5.4778 0.0008 10 6 5.8136 4.3831 0.1227 11 7 7.1918 4.5769 0.2446 12 6 5.2906 3.0988 0.1294 13 6 6.2065 1.9101 0.2681 14 6 6.5367 1.3681 -1.0987 15 1 6.1242 1.8372 -1.9797 16 6 7.3654 0.2734 -1.2244 17 7 7.6532 -0.2000 -2.4172 18 14 8.0794 -0.5375 0.2994 19 1 7.1575 -1.6014 0.7721 20 1 9.3981 -1.1356 -0.0299 21 1 8.2503 0.4799 1.3676 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.0058 3.8762 -0.2246 28 1 2.9488 6.1459 -0.2248 29 1 5.3747 6.4775 0.0007 30 1 7.5572 5.4754 0.2437 31 1 7.7833 3.8128 0.3301 32 1 7.1249 2.2157 0.7695 33 1 5.7118 1.1369 0.8558 34 1 8.2365 -0.9700 -2.5057 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396124167.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:28 Heat of formation + Delta-G solvation = -81.147500 kcal Electronic energy + Delta-G solvation = -18254.630307 eV Core-core repulsion = 15344.568384 eV Total energy + Delta-G solvation = -2910.061923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.56756 -39.98339 -37.51935 -35.62446 -34.95917 -33.14799 -32.57418 -30.33556 -28.88493 -25.84914 -24.47859 -23.59486 -21.99647 -21.53583 -18.99706 -18.91215 -17.91065 -17.59381 -17.39484 -16.66868 -16.17778 -16.00043 -15.13094 -14.91915 -14.80378 -14.43595 -14.18197 -13.89646 -13.66399 -13.42427 -12.96160 -12.83555 -12.63414 -12.51620 -12.46506 -11.99284 -11.72051 -11.51683 -11.44500 -11.44063 -10.93486 -10.62755 -9.64955 -8.28075 -8.22350 -6.21978 -0.04312 0.76626 1.29639 1.35177 1.42771 1.75479 1.78585 2.37026 3.02824 3.12516 3.20417 3.85049 4.02229 4.12398 4.14679 4.27977 4.34900 4.39169 4.63676 4.78375 4.92013 4.95211 5.01441 5.09347 5.13938 5.23547 5.44906 5.51823 5.62319 5.63129 5.83208 6.03048 6.29492 6.66338 6.76780 6.97359 7.14678 7.37442 8.93447 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.010542 C = 0.006695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.524466 B = 2655.333064 C = 4181.518739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.051 3.949 3 O -0.356 6.356 4 C 0.488 3.512 5 O -0.505 6.505 6 C -0.109 4.109 7 C -0.128 4.128 8 C -0.091 4.091 9 C -0.163 4.163 10 C 0.192 3.808 11 N -0.868 5.868 12 C -0.092 4.092 13 C 0.025 3.975 14 C -0.470 4.470 15 H 0.017 0.983 16 C 0.008 3.992 17 N -0.955 5.955 18 Si 0.943 3.057 19 H -0.284 1.284 20 H -0.281 1.281 21 H -0.243 1.243 22 H 0.099 0.901 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.146 0.854 28 H 0.167 0.833 29 H 0.157 0.843 30 H 0.409 0.591 31 H 0.398 0.602 32 H 0.025 0.975 33 H 0.035 0.965 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.189 10.217 8.322 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 O -0.274 6.274 4 C 0.333 3.667 5 O -0.393 6.393 6 C -0.111 4.111 7 C -0.148 4.148 8 C -0.109 4.109 9 C -0.186 4.186 10 C 0.087 3.913 11 N -0.409 5.409 12 C -0.097 4.097 13 C -0.012 4.012 14 C -0.509 4.509 15 H 0.036 0.964 16 C -0.187 4.187 17 N -0.598 5.598 18 Si 0.768 3.232 19 H -0.210 1.210 20 H -0.206 1.206 21 H -0.166 1.166 22 H 0.118 0.882 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.163 0.837 28 H 0.185 0.815 29 H 0.175 0.825 30 H 0.239 0.761 31 H 0.228 0.772 32 H 0.042 0.958 33 H 0.053 0.947 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.913 9.770 8.242 16.808 hybrid contribution 1.046 -1.281 0.024 1.654 sum -9.868 8.490 8.266 15.420 Atomic orbital electron populations 1.21783 0.89256 1.04397 1.03981 1.23249 0.97661 0.79620 1.01734 1.86501 1.23089 1.33108 1.84716 1.21723 0.80734 0.90781 0.73452 1.90934 1.60069 1.43654 1.44669 1.18851 0.93227 0.90189 1.08852 1.21315 0.99929 0.91442 1.02100 1.21168 0.94703 0.96954 0.98077 1.21147 0.93653 0.97687 1.06145 1.17666 0.86038 0.92161 0.95446 1.42494 1.03343 1.11391 1.83711 1.19778 0.93058 0.94849 1.01980 1.18639 0.93645 0.92556 0.96341 1.20784 1.26491 1.12419 0.91177 0.96433 1.25774 0.97120 0.97151 0.98685 1.70056 1.39174 1.25939 1.24604 0.85768 0.77283 0.79448 0.80687 1.21023 1.20626 1.16628 0.88196 0.90561 0.91122 0.92972 0.91881 0.83669 0.81513 0.82539 0.76068 0.77206 0.95751 0.94709 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 10.29 71.98 0.74 -1.94 16 2 C 0.05 1.55 6.19 71.98 0.45 2.00 16 3 O -0.36 -12.83 9.49 -56.21 -0.53 -13.37 16 4 C 0.49 21.66 7.83 70.33 0.55 22.21 16 5 O -0.50 -26.75 12.26 19.92 0.24 -26.51 16 6 C -0.11 -4.52 5.87 -20.12 -0.12 -4.64 16 7 C -0.13 -3.98 9.61 22.55 0.22 -3.77 16 8 C -0.09 -2.28 10.02 22.21 0.22 -2.05 16 9 C -0.16 -4.40 9.89 22.45 0.22 -4.18 16 10 C 0.19 6.82 6.73 38.17 0.26 7.08 16 11 N -0.87 -26.87 8.99 -51.45 -0.46 -27.34 16 12 C -0.09 -4.05 5.12 -19.45 -0.10 -4.15 16 13 C 0.03 1.30 3.13 29.10 0.09 1.39 16 14 C -0.47 -28.81 8.55 25.60 0.22 -28.59 16 15 H 0.02 1.20 7.98 -2.91 -0.02 1.18 16 16 C 0.01 0.50 5.47 84.65 0.46 0.96 16 17 N -0.96 -63.22 13.96 21.45 0.30 -62.92 16 18 Si 0.94 47.99 27.47 68.60 1.88 49.88 16 19 H -0.28 -14.71 7.11 99.48 0.71 -14.01 16 20 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.24 -11.20 6.54 99.48 0.65 -10.55 16 22 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 24 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.15 3.84 7.62 -2.91 -0.02 3.82 16 28 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 29 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.41 9.15 8.84 -92.71 -0.82 8.33 16 31 H 0.40 13.80 6.71 -92.71 -0.62 13.18 16 32 H 0.02 1.17 5.33 -2.39 -0.01 1.16 16 33 H 0.04 1.91 5.22 -2.39 -0.01 1.90 16 34 H 0.26 16.25 8.31 -92.70 -0.77 15.48 16 Total: -1.00 -79.41 288.45 4.28 -75.13 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.36 Total: 20.82 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 3.21 Total: -15.68 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -0.16 Total: -90.26 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.29 Total: -39.88 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 1.88 Total: 49.88 kcal Total: -79.41 4.28 -75.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396124167.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.022 kcal (2) G-P(sol) polarization free energy of solvation -79.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds