Wall clock time and date at job start Mon Mar 30 2020 04:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 116.99974 * 2 1 4 4 O 1.20827 * 119.99996 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00098 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47160 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47130 * 179.97438 * 6 5 3 8 8 C 1.38904 * 119.68139 * 90.00203 * 7 6 5 9 9 C 1.36448 * 120.59410 * 180.02562 * 8 7 6 10 10 C 1.40728 * 119.95337 * 359.97438 * 9 8 7 11 11 C 1.41041 * 120.30701 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99860 * 209.20923 * 11 10 9 13 13 C 1.39924 * 120.00419 * 29.20888 * 11 10 9 14 14 N 1.30883 * 120.00449 * 197.28927 * 13 11 10 15 15 Si 1.86808 * 119.99845 * 17.28521 * 13 11 10 16 16 H 1.48498 * 109.46748 * 270.00512 * 15 13 11 17 17 H 1.48499 * 109.46750 * 30.00090 * 15 13 11 18 18 H 1.48494 * 109.46895 * 150.00370 * 15 13 11 19 19 C 1.41548 * 119.38643 * 0.27385 * 10 9 8 20 20 N 1.38728 * 120.29278 * 179.72615 * 19 10 9 21 21 C 1.38168 * 119.69073 * 269.97996 * 7 6 5 22 22 H 1.09003 * 109.47547 * 300.00179 * 1 2 3 23 23 H 1.09000 * 109.47365 * 60.00236 * 1 2 3 24 24 H 1.09010 * 109.47326 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47267 * 59.99554 * 5 3 2 26 26 H 1.09006 * 109.46837 * 299.99494 * 5 3 2 27 27 H 1.09001 * 109.47174 * 59.99768 * 6 5 3 28 28 H 1.08997 * 109.47289 * 299.99584 * 6 5 3 29 29 H 1.07991 * 119.70473 * 359.97438 * 8 7 6 30 30 H 1.08007 * 120.02394 * 179.97438 * 9 8 7 31 31 H 0.97000 * 119.99633 * 355.40908 * 14 13 11 32 32 H 0.96999 * 120.00519 * 359.97438 * 20 19 10 33 33 H 0.96998 * 119.99975 * 180.02562 * 20 19 10 34 34 H 1.08003 * 119.98334 * 0.02562 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 -0.0011 7 6 5.5050 2.8209 -0.0011 8 6 6.1919 2.8565 -1.2078 9 6 7.5544 2.9274 -1.2295 10 6 8.2753 2.9656 -0.0215 11 6 9.6837 3.0395 -0.0352 12 1 10.2548 2.6126 0.7761 13 6 10.3412 3.6657 -1.0998 14 7 11.6169 3.4506 -1.2988 15 14 9.3983 4.8088 -2.2374 16 1 8.8364 4.0281 -3.3687 17 1 8.2933 5.4551 -1.4847 18 1 10.3157 5.8516 -2.7627 19 6 7.5742 2.9239 1.2074 20 7 8.2663 2.9548 2.4093 21 6 6.1883 2.8576 1.1992 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 3.9557 0.7809 -0.8908 26 1 3.9563 0.7806 0.8893 27 1 3.6106 3.2364 0.8889 28 1 3.6101 3.2359 -0.8911 29 1 5.6428 2.8270 -2.1372 30 1 8.0792 2.9542 -2.1731 31 1 12.1214 2.9107 -0.6704 32 1 9.2350 3.0048 2.4101 33 1 7.7815 2.9256 3.2490 34 1 5.6437 2.8293 2.1315 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396126885.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:02 Heat of formation + Delta-G solvation = -103.551106 kcal Electronic energy + Delta-G solvation = -17426.708527 eV Core-core repulsion = 14515.675111 eV Total energy + Delta-G solvation = -2911.033417 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.46667 -40.00281 -37.63249 -36.17485 -35.25823 -33.88333 -31.43926 -29.38255 -28.85531 -26.88810 -24.32131 -23.20503 -21.83893 -21.19530 -19.89874 -18.66804 -17.74487 -17.51609 -17.44218 -17.02669 -16.22386 -15.77640 -15.34846 -15.00595 -14.63410 -14.41880 -14.22656 -13.88413 -13.54993 -13.43888 -13.14175 -12.73903 -12.59812 -12.27676 -12.11029 -11.88394 -11.74120 -11.59934 -11.45364 -11.21895 -10.97254 -10.76388 -9.44478 -9.10021 -8.25808 -6.23140 0.85785 1.12098 1.20410 1.41738 1.58049 1.80213 1.85783 2.25813 2.75147 3.48707 3.59720 3.83201 4.15356 4.26212 4.32224 4.34763 4.41042 4.48424 4.69340 4.75165 4.80504 4.89486 5.00720 5.15241 5.26898 5.42104 5.51878 5.63000 5.65189 5.86506 6.18935 6.20104 6.49677 6.66250 6.76102 6.87147 7.11733 7.42486 8.17076 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.036754 B = 0.004850 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.649088 B = 5772.149405 C = 6173.088571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.540 6.540 5 C -0.102 4.102 6 C -0.040 4.040 7 C -0.140 4.140 8 C -0.131 4.131 9 C -0.223 4.223 10 C 0.016 3.984 11 C -0.543 4.543 12 H 0.050 0.950 13 C 0.006 3.994 14 N -0.866 5.866 15 Si 1.107 2.893 16 H -0.263 1.263 17 H -0.266 1.266 18 H -0.290 1.290 19 C 0.122 3.878 20 N -0.873 5.873 21 C -0.170 4.170 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.130 0.870 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.273 0.727 32 H 0.391 0.609 33 H 0.397 0.603 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.026 -5.060 3.080 18.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.311 3.689 4 O -0.430 6.430 5 C -0.140 4.140 6 C -0.077 4.077 7 C -0.141 4.141 8 C -0.150 4.150 9 C -0.243 4.243 10 C 0.011 3.989 11 C -0.575 4.575 12 H 0.068 0.932 13 C -0.204 4.204 14 N -0.492 5.492 15 Si 0.930 3.070 16 H -0.189 1.189 17 H -0.191 1.191 18 H -0.218 1.218 19 C 0.019 3.981 20 N -0.414 5.414 21 C -0.193 4.193 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.148 0.852 25 H 0.135 0.865 26 H 0.135 0.865 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.219 0.781 33 H 0.226 0.774 34 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.034 -3.897 1.705 17.557 hybrid contribution 0.640 -1.008 1.832 2.187 sum -16.394 -4.905 3.537 17.474 Atomic orbital electron populations 1.23533 0.75041 1.05587 1.02465 1.86525 1.24920 1.33104 1.83778 1.24245 0.92764 0.80987 0.70903 1.90643 1.68050 1.37331 1.46987 1.21486 0.85480 0.99785 1.07212 1.20034 0.90682 0.94036 1.02982 1.19147 0.94315 1.08518 0.92137 1.20351 0.93252 1.03936 0.97495 1.20771 0.95111 1.12063 0.96404 1.17609 0.93217 0.96837 0.91276 1.20215 0.92487 1.36417 1.08376 0.93183 1.28022 0.96504 0.97319 0.98597 1.70650 1.10136 1.34154 1.34296 0.83137 0.73979 0.74690 0.75195 1.18916 1.19052 1.21784 1.18162 0.91511 1.01631 0.86798 1.41888 1.08812 1.86366 1.04359 1.20285 0.91122 1.10030 0.97912 0.92010 0.92044 0.85161 0.86523 0.86469 0.91279 0.91335 0.86468 0.88507 0.91661 0.78119 0.77448 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.37 -7.95 10.56 -51.35 -0.54 -8.49 16 3 C 0.47 11.66 7.96 71.24 0.57 12.22 16 4 O -0.54 -16.39 15.73 21.96 0.35 -16.05 16 5 C -0.10 -2.42 5.79 29.85 0.17 -2.25 16 6 C -0.04 -1.14 4.62 29.85 0.14 -1.00 16 7 C -0.14 -4.99 5.15 -19.72 -0.10 -5.09 16 8 C -0.13 -5.17 9.61 22.01 0.21 -4.96 16 9 C -0.22 -10.41 7.20 22.46 0.16 -10.24 16 10 C 0.02 0.78 5.14 -21.17 -0.11 0.67 16 11 C -0.54 -29.51 8.82 23.37 0.21 -29.30 16 12 H 0.05 2.81 6.98 -2.91 -0.02 2.79 16 13 C 0.01 0.34 5.42 85.24 0.46 0.80 16 14 N -0.87 -49.02 13.66 21.83 0.30 -48.72 16 15 Si 1.11 50.77 24.90 68.60 1.71 52.47 16 16 H -0.26 -11.25 6.44 99.48 0.64 -10.60 16 17 H -0.27 -12.09 7.02 99.48 0.70 -11.39 16 18 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 19 C 0.12 5.29 6.79 38.99 0.26 5.56 16 20 N -0.87 -32.40 8.98 -50.39 -0.45 -32.85 16 21 C -0.17 -6.33 9.52 22.37 0.21 -6.12 16 22 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 23 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 24 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.12 2.51 8.14 -2.38 -0.02 2.49 16 27 H 0.07 1.95 8.04 -2.39 -0.02 1.93 16 28 H 0.07 1.97 8.04 -2.39 -0.02 1.95 16 29 H 0.12 3.99 8.06 -2.92 -0.02 3.97 16 30 H 0.10 4.59 4.42 -2.91 -0.01 4.58 16 31 H 0.27 15.27 8.73 -92.71 -0.81 14.46 16 32 H 0.39 15.23 7.12 -92.71 -0.66 14.57 16 33 H 0.40 11.66 8.84 -92.71 -0.82 10.84 16 34 H 0.12 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -63.41 289.94 4.28 -59.13 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.46 Total: 32.62 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 3.38 Total: -38.11 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -0.15 Total: -81.58 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.20 Total: -24.54 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 1.71 Total: 52.47 kcal Total: -63.41 4.28 -59.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396126885.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.420 kcal (2) G-P(sol) polarization free energy of solvation -63.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds