Wall clock time and date at job start Mon Mar 30 2020 04:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34219 * 117.00526 * 2 1 4 4 O 1.20823 * 120.00180 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00611 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47505 * 179.97438 * 5 3 2 7 7 C 1.50698 * 109.47120 * 180.02562 * 6 5 3 8 8 C 1.38912 * 119.69964 * 270.02216 * 7 6 5 9 9 C 1.38162 * 120.62578 * 179.97438 * 8 7 6 10 10 C 1.38753 * 120.02637 * 359.71390 * 9 8 7 11 11 N 1.38729 * 120.29243 * 180.28093 * 10 9 8 12 12 C 1.41536 * 119.40898 * 0.56046 * 10 9 8 13 13 C 1.41049 * 120.30280 * 179.72384 * 12 10 9 14 14 H 1.08003 * 120.00134 * 333.48932 * 13 12 10 15 15 C 1.39928 * 120.00137 * 153.49999 * 13 12 10 16 16 N 1.30885 * 120.00141 * 343.90849 * 15 13 12 17 17 Si 1.86797 * 120.00379 * 163.91476 * 15 13 12 18 18 H 1.48500 * 109.47096 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47429 * 119.99394 * 17 15 13 20 20 H 1.48505 * 109.46998 * 239.99720 * 17 15 13 21 21 C 1.36443 * 119.70806 * 90.00034 * 7 6 5 22 22 H 1.09000 * 109.46977 * 59.99912 * 1 2 3 23 23 H 1.08996 * 109.47781 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46645 * 300.00420 * 1 2 3 25 25 H 1.09001 * 109.47050 * 59.99320 * 5 3 2 26 26 H 1.09001 * 109.46630 * 300.00044 * 5 3 2 27 27 H 1.09001 * 109.47336 * 59.99722 * 6 5 3 28 28 H 1.09001 * 109.47398 * 299.99801 * 6 5 3 29 29 H 1.07998 * 119.68477 * 359.97438 * 8 7 6 30 30 H 1.08001 * 119.98436 * 180.02562 * 9 8 7 31 31 H 0.97004 * 119.99569 * 174.22472 * 11 10 9 32 32 H 0.97000 * 120.00328 * 354.22092 * 11 10 9 33 33 H 0.96993 * 120.00239 * 185.03503 * 16 15 13 34 34 H 1.08007 * 120.02163 * 0.03964 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1958 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0003 2.7419 -0.0011 7 6 5.5052 2.8207 -0.0023 8 6 6.1935 2.8563 1.2038 9 6 7.5731 2.9280 1.2250 10 6 8.2851 2.9591 0.0345 11 7 9.6707 3.0252 0.0494 12 6 7.5849 2.9288 -1.1952 13 6 8.2894 2.9655 -2.4165 14 1 9.2633 3.4300 -2.4644 15 6 7.7267 2.4002 -3.5662 16 7 6.7170 1.5739 -3.4622 17 14 8.4164 2.8247 -5.2494 18 1 9.5475 3.7745 -5.0957 19 1 8.8960 1.5867 -5.9145 20 1 7.3536 3.4510 -6.0763 21 6 6.1795 2.8559 -1.1880 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.9558 0.7807 -0.8908 26 1 3.9564 0.7804 0.8892 27 1 3.6109 3.2363 0.8889 28 1 3.6103 3.2358 -0.8911 29 1 5.6450 2.8277 2.1336 30 1 8.0977 2.9548 2.1686 31 1 10.1682 2.9623 -0.7810 32 1 10.1421 3.1344 0.8900 33 1 6.3738 1.1257 -4.2509 34 1 5.6350 2.8280 -2.1203 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396129634.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:54 Heat of formation + Delta-G solvation = -82.022005 kcal Electronic energy + Delta-G solvation = -17574.580246 eV Core-core repulsion = 14664.480401 eV Total energy + Delta-G solvation = -2910.099845 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.19862 -38.00195 -36.36756 -34.40155 -33.51868 -31.62756 -29.47306 -28.36093 -26.88252 -25.13254 -23.33956 -21.17551 -20.50506 -19.29545 -17.44364 -16.80685 -16.38962 -16.21146 -15.85517 -15.51210 -14.71034 -14.01715 -13.80833 -13.20942 -12.89894 -12.61641 -12.39376 -12.14576 -12.05649 -11.84297 -11.48486 -11.26308 -11.05036 -10.83812 -10.69274 -10.50845 -10.33991 -10.22259 -9.58360 -9.40383 -9.12558 -9.02657 -7.32565 -6.65979 -6.24544 -4.11374 2.48961 2.80075 2.92298 3.12393 3.16097 3.22867 3.28002 4.00251 4.70544 5.08262 5.12884 5.19014 5.27021 5.49527 5.57611 5.60142 5.89604 6.05339 6.23895 6.34396 6.50092 6.56198 6.60942 6.78498 7.06787 7.26376 7.33793 7.59399 7.73782 7.90145 8.00957 8.21566 8.29241 8.54611 8.83651 8.88567 9.12211 9.19572 10.33696 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.006212 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.425226 B = 4506.638284 C = 5644.270021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.461 3.539 4 O -0.514 6.514 5 C -0.105 4.105 6 C -0.048 4.048 7 C -0.121 4.121 8 C -0.183 4.183 9 C -0.182 4.182 10 C 0.118 3.882 11 N -0.885 5.885 12 C 0.061 3.939 13 C -0.466 4.466 14 H 0.071 0.929 15 C 0.076 3.924 16 N -0.805 5.805 17 Si 0.904 3.096 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.274 1.274 21 C -0.126 4.126 22 H 0.060 0.940 23 H 0.097 0.903 24 H 0.059 0.941 25 H 0.112 0.888 26 H 0.102 0.898 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.391 0.609 32 H 0.376 0.624 33 H 0.276 0.724 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.190 -2.807 3.733 6.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.305 3.695 4 O -0.402 6.402 5 C -0.143 4.143 6 C -0.086 4.086 7 C -0.123 4.123 8 C -0.203 4.203 9 C -0.205 4.205 10 C 0.016 3.984 11 N -0.426 5.426 12 C 0.056 3.944 13 C -0.497 4.497 14 H 0.089 0.911 15 C -0.140 4.140 16 N -0.432 5.432 17 Si 0.729 3.271 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.200 1.200 21 C -0.147 4.147 22 H 0.079 0.921 23 H 0.115 0.885 24 H 0.078 0.922 25 H 0.130 0.870 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.219 0.781 32 H 0.201 0.799 33 H 0.087 0.913 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.695 -2.619 3.558 7.207 hybrid contribution 0.450 0.060 -0.783 0.905 sum -5.245 -2.559 2.775 6.462 Atomic orbital electron populations 1.23185 0.77274 1.03204 1.02271 1.86556 1.22812 1.34299 1.84387 1.24394 0.92831 0.80841 0.71428 1.90625 1.67478 1.36387 1.45706 1.21573 0.85037 1.01444 1.06234 1.20166 0.94008 0.92222 1.02178 1.18888 0.92473 1.06913 0.93978 1.19993 0.93156 1.11712 0.95435 1.19977 0.94077 1.11903 0.94558 1.17995 0.83387 1.03255 0.93749 1.41888 1.04115 1.86980 1.09628 1.17227 0.91908 0.94842 0.90440 1.19175 1.03656 1.34319 0.92549 0.91061 1.25748 0.94028 0.93488 1.00726 1.69797 1.21672 1.20454 1.31247 0.86344 0.79680 0.79095 0.81983 1.18775 1.20302 1.19973 1.20701 0.93567 1.04380 0.96064 0.92126 0.88502 0.92220 0.86968 0.87950 0.92091 0.91595 0.89605 0.89574 0.78052 0.79862 0.91319 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.36 10.56 -39.23 -0.41 -5.78 16 3 C 0.46 7.69 7.96 36.01 0.29 7.98 16 4 O -0.51 -9.68 15.73 -18.75 -0.29 -9.98 16 5 C -0.11 -1.79 5.79 -27.88 -0.16 -1.95 16 6 C -0.05 -0.93 4.61 -27.89 -0.13 -1.06 16 7 C -0.12 -2.71 5.10 -105.02 -0.54 -3.24 16 8 C -0.18 -3.98 9.68 -39.36 -0.38 -4.36 16 9 C -0.18 -4.01 9.89 -39.42 -0.39 -4.40 16 10 C 0.12 2.76 6.79 -83.29 -0.57 2.19 16 11 N -0.88 -17.46 8.96 32.72 0.29 -17.16 16 12 C 0.06 1.56 5.57 -106.64 -0.59 0.97 16 13 C -0.47 -11.96 8.44 -37.88 -0.32 -12.28 16 14 H 0.07 1.75 6.81 -52.48 -0.36 1.39 16 15 C 0.08 1.87 5.16 -17.32 -0.09 1.79 16 16 N -0.80 -20.46 10.96 55.55 0.61 -19.85 16 17 Si 0.90 18.71 29.59 -169.99 -5.03 13.68 16 18 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 C -0.13 -3.18 8.24 -39.29 -0.32 -3.50 16 22 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 23 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 25 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 26 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 27 H 0.06 1.12 8.04 -51.93 -0.42 0.70 16 28 H 0.07 1.31 8.03 -51.93 -0.42 0.90 16 29 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 30 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.39 7.59 7.14 -40.82 -0.29 7.29 16 32 H 0.38 6.22 8.84 -40.82 -0.36 5.85 16 33 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 34 H 0.12 3.12 6.22 -52.48 -0.33 2.80 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -28.73 295.12 -6.79 -35.52 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -4.26 Total: 15.54 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.14 Total: -16.41 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.90 Total: -37.02 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.71 Total: -15.75 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.73 -6.79 -35.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396129634.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.502 kcal (2) G-P(sol) polarization free energy of solvation -28.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds