Wall clock time and date at job start Mon Mar 30 2020 04:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34219 * 117.00526 * 2 1 4 4 O 1.20823 * 120.00180 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00611 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47505 * 179.97438 * 5 3 2 7 7 C 1.50698 * 109.47120 * 180.02562 * 6 5 3 8 8 C 1.38912 * 119.69964 * 270.02216 * 7 6 5 9 9 C 1.38162 * 120.62578 * 179.97438 * 8 7 6 10 10 C 1.38753 * 120.02637 * 359.71390 * 9 8 7 11 11 N 1.38729 * 120.29243 * 180.28093 * 10 9 8 12 12 C 1.41536 * 119.40898 * 0.56046 * 10 9 8 13 13 C 1.41049 * 120.30280 * 179.72384 * 12 10 9 14 14 H 1.08003 * 120.00134 * 333.48932 * 13 12 10 15 15 C 1.39928 * 120.00137 * 153.49999 * 13 12 10 16 16 N 1.30885 * 120.00141 * 343.90849 * 15 13 12 17 17 Si 1.86797 * 120.00379 * 163.91476 * 15 13 12 18 18 H 1.48500 * 109.47096 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47429 * 119.99394 * 17 15 13 20 20 H 1.48505 * 109.46998 * 239.99720 * 17 15 13 21 21 C 1.36443 * 119.70806 * 90.00034 * 7 6 5 22 22 H 1.09000 * 109.46977 * 59.99912 * 1 2 3 23 23 H 1.08996 * 109.47781 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46645 * 300.00420 * 1 2 3 25 25 H 1.09001 * 109.47050 * 59.99320 * 5 3 2 26 26 H 1.09001 * 109.46630 * 300.00044 * 5 3 2 27 27 H 1.09001 * 109.47336 * 59.99722 * 6 5 3 28 28 H 1.09001 * 109.47398 * 299.99801 * 6 5 3 29 29 H 1.07998 * 119.68477 * 359.97438 * 8 7 6 30 30 H 1.08001 * 119.98436 * 180.02562 * 9 8 7 31 31 H 0.97004 * 119.99569 * 174.22472 * 11 10 9 32 32 H 0.97000 * 120.00328 * 354.22092 * 11 10 9 33 33 H 0.96993 * 120.00239 * 185.03503 * 16 15 13 34 34 H 1.08007 * 120.02163 * 0.03964 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1958 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0003 2.7419 -0.0011 7 6 5.5052 2.8207 -0.0023 8 6 6.1935 2.8563 1.2038 9 6 7.5731 2.9280 1.2250 10 6 8.2851 2.9591 0.0345 11 7 9.6707 3.0252 0.0494 12 6 7.5849 2.9288 -1.1952 13 6 8.2894 2.9655 -2.4165 14 1 9.2633 3.4300 -2.4644 15 6 7.7267 2.4002 -3.5662 16 7 6.7170 1.5739 -3.4622 17 14 8.4164 2.8247 -5.2494 18 1 9.5475 3.7745 -5.0957 19 1 8.8960 1.5867 -5.9145 20 1 7.3536 3.4510 -6.0763 21 6 6.1795 2.8559 -1.1880 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 3.9558 0.7807 -0.8908 26 1 3.9564 0.7804 0.8892 27 1 3.6109 3.2363 0.8889 28 1 3.6103 3.2358 -0.8911 29 1 5.6450 2.8277 2.1336 30 1 8.0977 2.9548 2.1686 31 1 10.1682 2.9623 -0.7810 32 1 10.1421 3.1344 0.8900 33 1 6.3738 1.1257 -4.2509 34 1 5.6350 2.8280 -2.1203 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396129634.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:54 Heat of formation + Delta-G solvation = -98.405893 kcal Electronic energy + Delta-G solvation = -17575.290705 eV Core-core repulsion = 14664.480401 eV Total energy + Delta-G solvation = -2910.810303 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.48628 -39.74661 -37.63898 -36.03861 -35.33033 -33.17714 -31.30498 -29.71816 -28.18492 -26.92443 -24.85404 -22.98402 -21.87304 -20.97645 -18.93634 -18.44485 -17.71649 -17.51621 -17.41598 -17.21121 -16.43491 -15.40446 -15.33318 -14.55435 -14.40990 -14.25534 -14.01973 -13.67809 -13.58599 -13.29308 -12.99137 -12.82132 -12.73630 -12.53874 -12.13872 -11.95844 -11.77061 -11.63164 -11.31686 -11.17116 -10.94857 -10.71205 -9.17034 -8.49049 -7.98274 -6.00377 1.08931 1.17331 1.32470 1.42452 1.53809 1.55102 1.86411 2.27501 2.88411 3.67341 3.80338 3.86894 4.15660 4.31274 4.32086 4.33831 4.52149 4.62953 4.71804 4.79495 4.88872 4.98025 5.17875 5.25513 5.39012 5.44122 5.55941 5.80433 5.96013 6.08966 6.40965 6.47326 6.71901 6.76306 7.01265 7.08104 7.35890 7.58323 8.52496 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.006212 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.425226 B = 4506.638284 C = 5644.270021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.469 3.531 4 O -0.539 6.539 5 C -0.099 4.099 6 C -0.041 4.041 7 C -0.126 4.126 8 C -0.178 4.178 9 C -0.189 4.189 10 C 0.108 3.892 11 N -0.874 5.874 12 C 0.023 3.977 13 C -0.494 4.494 14 H 0.072 0.928 15 C 0.034 3.966 16 N -0.835 5.835 17 Si 0.972 3.028 18 H -0.260 1.260 19 H -0.270 1.270 20 H -0.275 1.275 21 C -0.147 4.147 22 H 0.058 0.942 23 H 0.133 0.867 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.392 0.608 32 H 0.393 0.607 33 H 0.280 0.720 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 -3.270 4.705 7.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.314 3.686 4 O -0.429 6.429 5 C -0.136 4.136 6 C -0.078 4.078 7 C -0.128 4.128 8 C -0.197 4.197 9 C -0.212 4.212 10 C 0.006 3.994 11 N -0.417 5.417 12 C 0.018 3.982 13 C -0.525 4.525 14 H 0.090 0.910 15 C -0.179 4.179 16 N -0.464 5.464 17 Si 0.795 3.205 18 H -0.184 1.184 19 H -0.195 1.195 20 H -0.200 1.200 21 C -0.168 4.168 22 H 0.077 0.923 23 H 0.151 0.849 24 H 0.083 0.917 25 H 0.119 0.881 26 H 0.139 0.861 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.221 0.779 32 H 0.221 0.779 33 H 0.090 0.910 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.758 -3.095 4.556 7.968 hybrid contribution 0.412 0.176 -0.959 1.058 sum -5.346 -2.919 3.597 7.074 Atomic orbital electron populations 1.23557 0.74907 1.05706 1.02497 1.86526 1.25080 1.32911 1.83764 1.24142 0.92536 0.81071 0.70830 1.90617 1.67949 1.37295 1.47070 1.21397 0.85787 0.99830 1.06602 1.20051 0.92050 0.93827 1.01916 1.19126 0.94046 1.06170 0.93463 1.20382 0.93447 1.09728 0.96187 1.20344 0.94482 1.11180 0.95242 1.18202 0.84876 1.02781 0.93582 1.41795 1.02955 1.86224 1.10683 1.17584 0.92556 0.96372 0.91682 1.19400 1.04156 1.35454 0.93533 0.90951 1.26502 0.94376 0.93042 1.03952 1.69875 1.22871 1.21346 1.32261 0.85302 0.78864 0.78909 0.77427 1.18371 1.19528 1.20044 1.20651 0.93774 1.06151 0.96261 0.92277 0.84919 0.91693 0.88052 0.86123 0.90928 0.93196 0.86671 0.86692 0.77943 0.77861 0.90984 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.37 -10.20 10.56 -51.31 -0.54 -10.74 16 3 C 0.47 15.21 7.96 71.24 0.57 15.77 16 4 O -0.54 -19.94 15.73 21.97 0.35 -19.59 16 5 C -0.10 -3.29 5.79 29.85 0.17 -3.12 16 6 C -0.04 -1.56 4.61 29.85 0.14 -1.42 16 7 C -0.13 -5.63 5.10 -20.12 -0.10 -5.73 16 8 C -0.18 -7.38 9.68 22.41 0.22 -7.16 16 9 C -0.19 -7.95 9.89 22.37 0.22 -7.73 16 10 C 0.11 5.01 6.79 38.99 0.26 5.28 16 11 N -0.87 -33.52 8.96 -50.40 -0.45 -33.97 16 12 C 0.02 1.20 5.57 -21.17 -0.12 1.08 16 13 C -0.49 -25.92 8.44 23.37 0.20 -25.72 16 14 H 0.07 3.62 6.81 -2.91 -0.02 3.60 16 15 C 0.03 1.70 5.16 85.24 0.44 2.14 16 16 N -0.84 -43.77 10.96 21.83 0.24 -43.53 16 17 Si 0.97 38.96 29.59 68.60 2.03 40.99 16 18 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 19 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 20 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 21 C -0.15 -7.62 8.24 22.46 0.19 -7.43 16 22 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 23 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 1.23 8.13 -2.39 -0.02 1.22 16 25 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 26 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 27 H 0.07 2.58 8.04 -2.39 -0.02 2.56 16 28 H 0.05 2.04 8.03 -2.39 -0.02 2.02 16 29 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 30 H 0.12 4.11 8.06 -2.91 -0.02 4.09 16 31 H 0.39 15.00 7.14 -92.71 -0.66 14.34 16 32 H 0.39 12.21 8.84 -92.71 -0.82 11.39 16 33 H 0.28 13.48 8.30 -92.71 -0.77 12.71 16 34 H 0.10 5.29 6.22 -2.91 -0.02 5.27 16 Total: -1.00 -61.98 295.12 4.65 -57.34 By element: Atomic # 1 Polarization: 42.19 SS G_CDS: -0.35 Total: 41.84 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 3.38 Total: -32.33 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -0.21 Total: -77.50 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.20 Total: -30.34 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -61.98 4.65 -57.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396129634.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.070 kcal (2) G-P(sol) polarization free energy of solvation -61.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds