Wall clock time and date at job start Mon Mar 30 2020 04:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34234 * 116.99505 * 2 1 4 4 O 1.20822 * 120.00537 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99550 * 180.02562 * 3 2 1 6 6 N 1.46905 * 109.46982 * 180.02562 * 5 3 2 7 7 C 1.46898 * 110.99794 * 180.02562 * 6 5 3 8 8 C 1.50705 * 109.46958 * 180.02562 * 7 6 5 9 9 C 1.38629 * 119.74945 * 269.72807 * 8 7 6 10 10 C 1.37621 * 120.24859 * 179.72002 * 9 8 7 11 11 C 1.40707 * 119.74317 * 0.56733 * 10 9 8 12 12 C 1.41395 * 120.24557 * 179.68153 * 11 10 9 13 13 H 1.08002 * 120.00120 * 204.41205 * 12 11 10 14 14 C 1.39946 * 119.99710 * 24.40762 * 12 11 10 15 15 N 1.30822 * 120.00214 * 17.84661 * 14 12 11 16 16 Si 1.86806 * 119.99788 * 197.84890 * 14 12 11 17 17 H 1.48497 * 109.47159 * 60.00038 * 16 14 12 18 18 H 1.48501 * 109.46750 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47147 * 299.99829 * 16 14 12 20 20 C 1.40711 * 119.51418 * 359.70784 * 11 10 9 21 21 C 1.37620 * 119.74622 * 359.97438 * 20 11 10 22 22 H 1.08996 * 109.46895 * 59.99772 * 1 2 3 23 23 H 1.09002 * 109.46247 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46875 * 299.99579 * 1 2 3 25 25 H 1.09001 * 109.47426 * 60.00398 * 5 3 2 26 26 H 1.08997 * 109.47205 * 300.00096 * 5 3 2 27 27 H 1.00901 * 110.99514 * 303.95807 * 6 5 3 28 28 H 1.09007 * 109.47095 * 299.99835 * 7 6 5 29 29 H 1.08994 * 109.47528 * 60.00067 * 7 6 5 30 30 H 1.08005 * 119.87162 * 359.97438 * 9 8 7 31 31 H 1.08001 * 120.12314 * 180.27611 * 10 9 8 32 32 H 0.96999 * 120.00306 * 179.97438 * 15 14 12 33 33 H 1.08000 * 120.13205 * 179.97438 * 20 11 10 34 34 H 1.08006 * 119.88084 * 180.02562 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9828 2.6838 0.0002 7 6 5.4472 2.7997 -0.0010 8 6 5.8358 4.2558 0.0004 9 6 6.0176 4.9205 -1.2025 10 6 6.3668 6.2516 -1.2132 11 6 6.5510 6.9348 0.0030 12 6 6.9164 8.3007 0.0044 13 1 7.4301 8.7214 0.8562 14 6 6.6125 9.1074 -1.0980 15 7 5.7081 8.7219 -1.9612 16 14 7.4984 10.7346 -1.3371 17 1 8.9576 10.4899 -1.4630 18 1 6.9991 11.3932 -2.5709 19 1 7.2428 11.6137 -0.1680 20 6 6.3693 6.2485 1.2180 21 6 6.0137 4.9192 1.2048 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 3.9558 0.7811 -0.8909 26 1 3.9564 0.7807 0.8891 27 1 3.5804 3.1801 -0.7807 28 1 5.8507 2.3155 0.8883 29 1 5.8493 2.3169 -0.8916 30 1 5.8806 4.3926 -2.1348 31 1 6.5036 6.7685 -2.1515 32 1 5.4972 9.2812 -2.7251 33 1 6.5085 6.7631 2.1573 34 1 5.8733 4.3904 2.1360 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398994922.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:30 Heat of formation + Delta-G solvation = -69.376918 kcal Electronic energy + Delta-G solvation = -17044.888611 eV Core-core repulsion = 14135.337098 eV Total energy + Delta-G solvation = -2909.551513 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.39903 -37.80133 -36.65610 -35.35915 -33.55506 -30.64331 -29.25849 -28.65149 -27.05535 -25.11125 -22.87842 -21.02580 -20.87930 -19.88784 -17.60629 -17.27651 -16.88796 -16.57542 -15.41338 -15.03054 -14.45681 -14.17288 -13.84977 -13.63518 -13.38691 -13.05051 -12.54203 -12.29049 -12.03626 -11.91289 -11.70384 -11.48282 -11.05495 -10.94702 -10.88011 -10.64465 -10.37599 -10.34165 -9.57755 -9.37615 -9.12510 -8.20082 -7.43481 -7.28839 -6.75013 -4.33823 2.23586 2.53439 2.80719 3.06988 3.09629 3.11390 3.21588 3.93779 4.45111 4.74932 4.82352 4.96701 5.03194 5.20627 5.28882 5.37305 5.72121 5.78041 5.84449 6.23732 6.30271 6.36616 6.43361 6.96354 7.08801 7.18985 7.28386 7.39668 7.58071 7.64320 7.80587 7.90160 8.06910 8.14667 8.32242 8.65480 8.91024 8.99563 10.19340 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.042070 B = 0.003855 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.392017 B = 7262.337158 C = 7563.668359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.367 6.367 3 C 0.456 3.544 4 O -0.488 6.488 5 C 0.067 3.933 6 N -0.674 5.674 7 C 0.128 3.872 8 C -0.219 4.219 9 C -0.093 4.093 10 C -0.167 4.167 11 C 0.114 3.886 12 C -0.463 4.463 13 H 0.077 0.923 14 C 0.076 3.924 15 N -0.791 5.791 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.229 4.229 21 C -0.066 4.066 22 H 0.061 0.939 23 H 0.099 0.901 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.111 0.889 27 H 0.352 0.648 28 H 0.066 0.934 29 H 0.024 0.976 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.281 0.719 33 H 0.091 0.909 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.361 -13.058 0.348 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.284 6.284 3 C 0.297 3.703 4 O -0.373 6.373 5 C -0.064 4.064 6 N -0.308 5.308 7 C 0.001 3.999 8 C -0.220 4.220 9 C -0.112 4.112 10 C -0.186 4.186 11 C 0.111 3.889 12 C -0.492 4.492 13 H 0.095 0.905 14 C -0.142 4.142 15 N -0.416 5.416 16 Si 0.733 3.267 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.190 1.190 20 C -0.249 4.249 21 C -0.084 4.084 22 H 0.080 0.920 23 H 0.117 0.883 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.129 0.871 27 H 0.172 0.828 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.101 0.899 31 H 0.135 0.865 32 H 0.092 0.908 33 H 0.109 0.891 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.792 -12.617 0.808 13.521 hybrid contribution 0.161 0.600 -1.071 1.238 sum -4.631 -12.017 -0.263 12.881 Atomic orbital electron populations 1.23220 0.76551 1.03371 1.02607 1.86490 1.23309 1.33902 1.84670 1.23889 0.92286 0.81284 0.72839 1.90706 1.66763 1.36174 1.43646 1.21469 0.87062 0.93957 1.03869 1.60467 1.10824 1.07644 1.51868 1.20594 0.84610 0.95553 0.99147 1.18813 1.15567 0.94024 0.93635 1.20521 1.00598 0.95083 0.95011 1.21265 1.06087 0.92566 0.98724 1.17625 0.87530 0.92801 0.90923 1.19586 1.33501 0.94141 1.01990 0.90469 1.25921 0.93291 1.00142 0.94859 1.69825 1.23097 1.37721 1.10973 0.86372 0.80751 0.81167 0.78451 1.18839 1.20357 1.18997 1.20974 1.12070 0.94850 0.96961 1.20337 0.98383 0.94335 0.95381 0.92005 0.88301 0.91901 0.91509 0.87113 0.82816 0.91600 0.95798 0.89871 0.86523 0.90821 0.89061 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.56 101.05 1.07 1.39 16 2 O -0.37 -4.32 10.57 -39.27 -0.41 -4.73 16 3 C 0.46 6.38 7.99 36.01 0.29 6.67 16 4 O -0.49 -8.62 15.95 -18.75 -0.30 -8.92 16 5 C 0.07 0.84 6.28 -4.97 -0.03 0.81 16 6 N -0.67 -11.17 6.12 -116.33 -0.71 -11.88 16 7 C 0.13 2.16 5.80 -4.97 -0.03 2.13 16 8 C -0.22 -4.71 5.42 -104.33 -0.56 -5.28 16 9 C -0.09 -2.15 9.67 -39.66 -0.38 -2.53 16 10 C -0.17 -4.35 8.70 -38.88 -0.34 -4.69 16 11 C 0.11 3.07 5.57 -106.83 -0.60 2.47 16 12 C -0.46 -12.41 9.05 -37.74 -0.34 -12.75 16 13 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 14 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 15 N -0.79 -20.67 10.95 55.55 0.61 -20.06 16 16 Si 0.91 18.77 29.60 -169.99 -5.03 13.74 16 17 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 21 C -0.07 -1.49 9.67 -39.66 -0.38 -1.87 16 22 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 23 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.35 6.27 8.42 -39.29 -0.33 5.94 16 28 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 29 H 0.02 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 32 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 33 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 34 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 299.96 15.07 4.52 4.52 Total: -1.00 -29.81 299.96 -7.53 -37.34 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.42 Total: 7.91 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -1.78 Total: -17.92 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: -0.10 Total: -31.94 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.71 Total: -13.65 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.81 -7.53 -37.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398994922.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.035 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds