Wall clock time and date at job start Mon Mar 30 2020 03:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47179 * 2 1 4 4 N 1.46896 * 109.47330 * 120.00160 * 2 1 3 5 5 C 1.46897 * 110.99880 * 275.00145 * 4 2 1 6 6 C 1.50707 * 109.46914 * 180.02562 * 5 4 2 7 7 C 1.38635 * 119.74548 * 269.72294 * 6 5 4 8 8 C 1.37617 * 120.24645 * 179.72167 * 7 6 5 9 9 C 1.40714 * 119.74300 * 0.57477 * 8 7 6 10 10 C 1.41402 * 120.24629 * 179.68297 * 9 8 7 11 11 H 1.07996 * 119.99627 * 24.40394 * 10 9 8 12 12 C 1.39945 * 120.00076 * 204.41364 * 10 9 8 13 13 N 1.30817 * 120.00204 * 17.84697 * 12 10 9 14 14 Si 1.86795 * 119.99897 * 197.85362 * 12 10 9 15 15 H 1.48499 * 109.47314 * 59.99449 * 14 12 10 16 16 H 1.48497 * 109.47381 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47245 * 299.99756 * 14 12 10 18 18 C 1.40715 * 119.51605 * 359.70288 * 9 8 7 19 19 C 1.37619 * 119.74091 * 359.97438 * 18 9 8 20 20 C 1.50703 * 109.46947 * 240.00196 * 2 1 3 21 21 O 1.20824 * 119.99710 * 239.99777 * 20 2 1 22 22 O 1.34225 * 119.99970 * 59.99991 * 20 2 1 23 23 H 1.09001 * 109.47567 * 59.99961 * 1 2 3 24 24 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47186 * 299.99814 * 1 2 3 26 26 H 1.00902 * 111.00012 * 151.04756 * 4 2 1 27 27 H 1.08996 * 109.47374 * 59.99548 * 5 4 2 28 28 H 1.09008 * 109.47199 * 299.99780 * 5 4 2 29 29 H 1.08000 * 119.87958 * 359.97438 * 7 6 5 30 30 H 1.07996 * 120.12875 * 180.27545 * 8 7 6 31 31 H 0.96998 * 120.00477 * 179.97438 * 13 12 10 32 32 H 1.07998 * 120.13289 * 179.97438 * 18 9 8 33 33 H 1.07999 * 119.87970 * 180.02562 * 19 18 9 34 34 H 0.96705 * 116.99834 * 179.97438 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0824 0.2225 2.3468 6 6 2.5885 -0.5216 3.5556 7 6 1.6888 -1.1476 4.4045 8 6 2.1400 -1.8348 5.5082 9 6 3.5195 -1.8904 5.7800 10 6 3.9944 -2.5878 6.9147 11 1 3.4043 -3.3831 7.3457 12 6 5.2288 -2.2475 7.4794 13 7 5.7788 -1.0933 7.2024 14 14 6.0912 -3.4413 8.6283 15 1 6.3637 -4.7114 7.9088 16 1 7.3728 -2.8482 9.0875 17 1 5.2229 -3.7138 9.8018 18 6 4.4232 -1.2464 4.9146 19 6 3.9499 -0.5706 3.8132 20 6 2.0322 -0.7104 -1.2305 21 8 2.7269 -1.6927 -1.1197 22 8 1.7079 -0.2518 -2.4496 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 2.9173 -1.1205 1.0286 27 1 1.0871 0.6163 2.5524 28 1 2.7588 1.0462 2.1181 29 1 0.6301 -1.0992 4.1968 30 1 1.4378 -2.3254 6.1657 31 1 6.6342 -0.8572 7.5941 32 1 5.4840 -1.2823 5.1140 33 1 4.6414 -0.0759 3.1473 34 1 2.0540 -0.7405 -3.2089 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399108639.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:47 Heat of formation + Delta-G solvation = -100.274816 kcal Electronic energy + Delta-G solvation = -17298.871091 eV Core-core repulsion = 14387.979745 eV Total energy + Delta-G solvation = -2910.891346 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.42646 -39.56629 -37.59964 -36.90904 -35.51555 -32.86836 -31.15954 -30.60479 -27.87973 -25.97980 -24.47713 -22.86785 -21.70436 -21.49778 -19.20568 -19.07753 -18.18723 -17.18052 -17.06714 -16.10154 -15.96400 -15.64441 -15.43710 -14.96521 -14.56998 -14.21897 -13.79457 -13.65564 -13.35971 -13.18609 -13.06082 -12.77012 -12.70058 -12.56906 -12.42793 -12.30936 -12.03735 -11.50793 -11.36060 -11.23785 -10.98914 -9.51814 -9.31017 -9.17644 -8.63434 -6.32636 0.94491 1.13885 1.18154 1.37504 1.48422 1.52750 1.99898 2.20910 2.70652 3.26893 3.80272 4.05366 4.08747 4.28198 4.31657 4.37880 4.59784 4.67907 4.76048 4.91102 4.94846 5.06320 5.16940 5.32801 5.39143 5.49255 5.55456 5.72790 5.91803 6.08173 6.12156 6.19580 6.34724 6.41670 6.72017 6.95518 6.95795 7.05904 8.33519 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043965 B = 0.004138 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.722100 B = 6765.183925 C = 7005.226915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.088 3.912 3 H 0.100 0.900 4 N -0.683 5.683 5 C 0.132 3.868 6 C -0.204 4.204 7 C -0.070 4.070 8 C -0.247 4.247 9 C 0.080 3.920 10 C -0.505 4.505 11 H 0.074 0.926 12 C 0.036 3.964 13 N -0.825 5.825 14 Si 0.981 3.019 15 H -0.263 1.263 16 H -0.266 1.266 17 H -0.259 1.259 18 C -0.193 4.193 19 C -0.099 4.099 20 C 0.484 3.516 21 O -0.546 6.546 22 O -0.504 6.504 23 H 0.088 0.912 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.344 0.656 27 H 0.088 0.912 28 H 0.037 0.963 29 H 0.118 0.882 30 H 0.095 0.905 31 H 0.288 0.712 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.219 4.578 -13.366 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 H 0.118 0.882 4 N -0.319 5.319 5 C 0.005 3.995 6 C -0.206 4.206 7 C -0.088 4.088 8 C -0.266 4.266 9 C 0.077 3.923 10 C -0.535 4.535 11 H 0.092 0.908 12 C -0.179 4.179 13 N -0.451 5.451 14 Si 0.802 3.198 15 H -0.187 1.187 16 H -0.190 1.190 17 H -0.183 1.183 18 C -0.212 4.212 19 C -0.117 4.117 20 C 0.327 3.673 21 O -0.436 6.436 22 O -0.317 6.317 23 H 0.107 0.893 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.164 0.836 27 H 0.106 0.894 28 H 0.055 0.945 29 H 0.136 0.864 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -6.608 4.458 -12.820 15.096 hybrid contribution 1.710 -0.455 0.043 1.770 sum -4.898 4.003 -12.777 14.257 Atomic orbital electron populations 1.21737 0.89892 1.03020 1.04065 1.21337 0.99303 0.97008 0.84586 0.88243 1.60699 1.35154 1.33053 1.02985 1.20595 1.00561 0.91544 0.86792 1.19304 0.92585 1.08819 0.99844 1.20680 0.98438 0.96002 0.93696 1.21193 0.94713 1.08906 1.01809 1.17976 0.91860 0.90344 0.92072 1.19836 1.04209 1.17583 1.11826 0.90829 1.26740 0.96952 0.96197 0.97978 1.69868 1.16905 1.20037 1.38327 0.85270 0.77749 0.78633 0.78155 1.18718 1.19039 1.18269 1.21250 0.98994 1.04815 0.96173 1.20800 0.95201 0.99063 0.96685 1.23689 0.75883 0.81892 0.85866 1.90739 1.37667 1.27691 1.87547 1.84466 1.71901 1.58776 1.16509 0.89276 0.92703 0.90356 0.83605 0.89396 0.94476 0.86431 0.88701 0.90170 0.88412 0.87960 0.70968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 9.35 71.98 0.67 -1.66 16 2 C 0.09 1.95 3.13 44.17 0.14 2.09 16 3 H 0.10 1.82 7.80 -2.39 -0.02 1.80 16 4 N -0.68 -20.61 6.18 -499.47 -3.08 -23.69 16 5 C 0.13 4.12 5.60 85.56 0.48 4.60 16 6 C -0.20 -8.52 5.41 -19.67 -0.11 -8.63 16 7 C -0.07 -3.06 9.67 22.22 0.21 -2.85 16 8 C -0.25 -12.48 9.80 22.73 0.22 -12.26 16 9 C 0.08 4.46 5.58 -21.29 -0.12 4.34 16 10 C -0.51 -28.24 9.05 23.46 0.21 -28.02 16 11 H 0.07 3.98 7.91 -2.91 -0.02 3.95 16 12 C 0.04 1.87 5.14 85.26 0.44 2.31 16 13 N -0.83 -44.20 10.95 21.83 0.24 -43.96 16 14 Si 0.98 39.23 29.59 68.60 2.03 41.26 16 15 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 16 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 18 C -0.19 -10.45 8.70 22.73 0.20 -10.25 16 19 C -0.10 -4.60 9.67 22.22 0.21 -4.39 16 20 C 0.48 11.22 7.65 71.24 0.55 11.77 16 21 O -0.55 -17.26 16.40 21.97 0.36 -16.90 16 22 O -0.50 -7.65 13.33 -51.37 -0.68 -8.34 16 23 H 0.09 1.19 8.11 -2.39 -0.02 1.18 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.34 7.45 -2.38 -0.02 1.32 16 26 H 0.34 11.82 7.44 -89.69 -0.67 11.15 16 27 H 0.09 2.40 7.37 -2.39 -0.02 2.38 16 28 H 0.04 1.07 7.99 -2.38 -0.02 1.05 16 29 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 30 H 0.09 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 32 H 0.10 5.56 6.16 -2.91 -0.02 5.55 16 33 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 34 H 0.43 2.99 9.10 -74.05 -0.67 2.32 16 Total: -1.00 -66.37 296.46 1.76 -64.61 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -0.21 Total: 29.97 kcal Atomic # 6 Polarization: -46.06 SS G_CDS: 3.11 Total: -42.94 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -2.85 Total: -67.65 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.32 Total: -25.24 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -66.37 1.76 -64.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399108639.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.662 kcal (2) G-P(sol) polarization free energy of solvation -66.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds