Wall clock time and date at job start Mon Mar 30 2020 03:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47070 * 2 1 4 4 O 1.42898 * 109.47121 * 239.99728 * 2 1 3 5 5 C 1.50701 * 109.47407 * 119.99760 * 2 1 3 6 6 O 1.21275 * 120.00047 * 114.99723 * 5 2 1 7 7 N 1.34785 * 119.99659 * 295.00247 * 5 2 1 8 8 C 1.46497 * 119.99579 * 179.97438 * 7 5 2 9 9 C 1.50701 * 109.46856 * 179.97438 * 8 7 5 10 10 C 1.38631 * 119.75050 * 269.72717 * 9 8 7 11 11 C 1.37623 * 120.24919 * 179.72230 * 10 9 8 12 12 C 1.40716 * 119.74067 * 0.56841 * 11 10 9 13 13 C 1.41395 * 120.24342 * 179.67843 * 12 11 10 14 14 H 1.07997 * 120.00167 * 204.41097 * 13 12 11 15 15 C 1.39949 * 119.99747 * 24.41460 * 13 12 11 16 16 N 1.30823 * 119.99897 * 17.84439 * 15 13 12 17 17 Si 1.86801 * 119.99839 * 197.84385 * 15 13 12 18 18 H 1.48501 * 109.46853 * 90.00041 * 17 15 13 19 19 H 1.48498 * 109.46946 * 209.99880 * 17 15 13 20 20 H 1.48499 * 109.47279 * 329.99685 * 17 15 13 21 21 C 1.40714 * 119.51167 * 359.71027 * 12 11 10 22 22 C 1.37615 * 119.74685 * 359.97438 * 21 12 11 23 23 H 1.09003 * 109.47300 * 300.00371 * 1 2 3 24 24 H 1.09000 * 109.47220 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47350 * 60.00432 * 1 2 3 26 26 H 0.96696 * 114.00248 * 300.00111 * 4 2 1 27 27 H 0.96996 * 120.00302 * 359.97438 * 7 5 2 28 28 H 1.09001 * 109.47438 * 300.00051 * 8 7 5 29 29 H 1.08998 * 109.47074 * 59.99851 * 8 7 5 30 30 H 1.07997 * 119.87835 * 359.97438 * 10 9 8 31 31 H 1.07994 * 120.13300 * 180.28137 * 11 10 9 32 32 H 0.97000 * 119.99765 * 180.02562 * 16 15 13 33 33 H 1.08009 * 120.12588 * 179.97438 * 21 12 11 34 34 H 1.08004 * 119.87287 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0324 -0.7103 1.2305 6 8 2.6530 -1.7466 1.1215 7 7 1.7919 -0.1940 2.4520 8 6 2.2798 -0.8848 3.6482 9 6 1.8817 -0.1061 4.8755 10 6 2.7314 0.8670 5.3783 11 6 2.3756 1.5883 6.4952 12 6 1.1494 1.3264 7.1338 13 6 0.7764 2.0563 8.2859 14 1 0.0785 1.6312 8.9920 15 6 1.3114 3.3297 8.5111 16 7 1.8641 3.9904 7.5266 17 14 1.2362 4.0859 10.2176 18 1 2.4548 3.7112 10.9791 19 1 1.1605 5.5644 10.1008 20 1 0.0337 3.5834 10.9292 21 6 0.2976 0.3323 6.6179 22 6 0.6709 -0.3720 5.4962 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 1.7210 -1.5952 -1.2328 27 1 1.2958 0.6349 2.5392 28 1 1.8449 -1.8833 3.6941 29 1 3.3661 -0.9635 3.6047 30 1 3.6743 1.0628 4.8895 31 1 3.0370 2.3490 6.8826 32 1 2.2353 4.8729 7.6827 33 1 -0.6457 0.1228 7.1005 34 1 0.0185 -1.1352 5.0982 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567951501.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:51 Heat of formation + Delta-G solvation = -86.926934 kcal Electronic energy + Delta-G solvation = -17316.977671 eV Core-core repulsion = 14406.665133 eV Total energy + Delta-G solvation = -2910.312538 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.81833 -37.81772 -36.52807 -34.76429 -33.53447 -31.36457 -30.02237 -29.39573 -26.99468 -24.63040 -23.24970 -21.12716 -20.35456 -20.16765 -17.94760 -17.43466 -16.42723 -15.74792 -15.37490 -15.08692 -14.50201 -14.30366 -13.91336 -13.64036 -13.41586 -12.70149 -12.56184 -12.27003 -12.09085 -12.03709 -11.76354 -11.70425 -11.21259 -11.08726 -10.82082 -10.75679 -10.49706 -9.80078 -9.54267 -9.44764 -9.23660 -8.73145 -7.62125 -7.49842 -6.91189 -4.50928 2.52482 2.73993 2.93386 2.98731 3.02469 3.03146 3.58630 3.82425 4.19737 4.48209 4.81593 4.85878 4.96955 5.45360 5.55274 5.62636 5.77773 5.85179 5.87622 6.18452 6.23645 6.30085 6.75044 6.82277 6.93604 7.13501 7.21909 7.38471 7.46555 7.64617 7.85120 7.91381 7.96766 8.14835 8.39390 8.49606 8.74513 8.82038 10.02820 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043319 B = 0.004143 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.205115 B = 6757.565787 C = 6881.917645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.087 3.913 3 H 0.123 0.877 4 O -0.543 6.543 5 C 0.476 3.524 6 O -0.549 6.549 7 N -0.713 5.713 8 C 0.183 3.817 9 C -0.247 4.247 10 C -0.081 4.081 11 C -0.169 4.169 12 C 0.117 3.883 13 C -0.458 4.458 14 H 0.080 0.920 15 C 0.076 3.924 16 N -0.787 5.787 17 Si 0.910 3.090 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.230 4.230 22 C -0.070 4.070 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.382 0.618 27 H 0.402 0.598 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.283 0.717 33 H 0.093 0.907 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 -2.220 -7.768 8.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.024 3.976 3 H 0.140 0.860 4 O -0.348 6.348 5 C 0.261 3.739 6 O -0.428 6.428 7 N -0.364 5.364 8 C 0.061 3.939 9 C -0.249 4.249 10 C -0.100 4.100 11 C -0.188 4.188 12 C 0.114 3.886 13 C -0.487 4.487 14 H 0.098 0.902 15 C -0.143 4.143 16 N -0.412 5.412 17 Si 0.734 3.266 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.249 4.249 22 C -0.089 4.089 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.093 0.907 26 H 0.230 0.770 27 H 0.236 0.764 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.137 0.863 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.620 -2.163 -8.018 8.461 hybrid contribution -0.539 0.392 1.011 1.211 sum -2.160 -1.771 -7.007 7.543 Atomic orbital electron populations 1.22440 0.94133 1.03416 1.03855 1.21856 0.94435 0.97362 0.83915 0.85968 1.86558 1.77670 1.29744 1.40849 1.21606 0.80346 0.86092 0.85822 1.90678 1.41112 1.24146 1.86819 1.46589 1.56462 1.27661 1.05737 1.19970 0.98000 0.94262 0.81647 1.18979 0.99195 1.05840 1.00873 1.20566 0.97294 0.95457 0.96714 1.21320 0.97582 1.02044 0.97889 1.17673 0.90042 0.89725 0.91163 1.19684 1.23302 0.99697 1.06046 0.90219 1.25953 0.92821 0.97068 0.98442 1.69814 1.27678 1.11664 1.32018 0.86279 0.80006 0.78148 0.82162 1.19141 1.20205 1.18516 1.20976 1.00090 1.04134 0.99745 1.20398 0.94847 0.97837 0.95786 0.90596 0.91783 0.90692 0.76965 0.76364 0.92419 0.92337 0.89379 0.86343 0.90652 0.88878 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 9.49 37.16 0.35 -1.31 16 2 C 0.09 1.01 4.00 -27.88 -0.11 0.90 16 3 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 4 O -0.54 -6.85 12.99 -55.09 -0.72 -7.56 16 5 C 0.48 7.27 7.17 -10.98 -0.08 7.19 16 6 O -0.55 -10.40 16.32 -14.30 -0.23 -10.63 16 7 N -0.71 -10.93 5.51 -61.47 -0.34 -11.27 16 8 C 0.18 3.24 5.79 -5.19 -0.03 3.21 16 9 C -0.25 -4.99 5.27 -104.33 -0.55 -5.54 16 10 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 11 C -0.17 -4.15 8.70 -38.87 -0.34 -4.49 16 12 C 0.12 2.95 5.57 -106.83 -0.60 2.35 16 13 C -0.46 -11.59 9.05 -37.74 -0.34 -11.93 16 14 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 15 C 0.08 1.81 5.14 -17.34 -0.09 1.73 16 16 N -0.79 -19.32 10.95 55.55 0.61 -18.71 16 17 Si 0.91 17.80 29.60 -169.99 -5.03 12.77 16 18 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 19 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 21 C -0.23 -5.31 9.80 -38.87 -0.38 -5.69 16 22 C -0.07 -1.45 9.67 -39.66 -0.38 -1.84 16 23 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.38 3.88 8.79 45.56 0.40 4.28 16 27 H 0.40 5.62 8.25 -40.82 -0.34 5.28 16 28 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 29 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 30 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 31 H 0.12 3.03 6.15 -52.49 -0.32 2.70 16 32 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 33 H 0.09 2.04 8.06 -52.48 -0.42 1.61 16 34 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 298.09 15.07 4.49 4.49 Total: -1.00 -28.48 298.09 -7.74 -36.22 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -3.60 Total: 12.27 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -2.93 Total: -17.58 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: 0.27 Total: -29.98 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.95 Total: -18.20 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.48 -7.74 -36.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567951501.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.705 kcal (2) G-P(sol) polarization free energy of solvation -28.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds