Wall clock time and date at job start Mon Mar 30 2020 03:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47706 * 2 1 4 4 C 1.50700 * 109.47143 * 239.99783 * 2 1 3 5 5 O 1.21282 * 120.00222 * 240.00529 * 4 2 1 6 6 N 1.34780 * 120.00120 * 60.00257 * 4 2 1 7 7 C 1.47067 * 136.05152 * 359.63028 * 6 4 2 8 8 C 1.53497 * 87.98534 * 153.13820 * 7 6 4 9 9 C 1.50697 * 114.21116 * 139.65535 * 8 7 6 10 10 H 1.07997 * 119.99821 * 266.40153 * 9 8 7 11 11 C 1.37879 * 120.00200 * 86.39769 * 9 8 7 12 12 N 1.31507 * 119.99952 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99700 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46920 * 90.00384 * 13 11 9 15 15 H 1.48499 * 109.47159 * 209.99784 * 13 11 9 16 16 H 1.48500 * 109.47652 * 329.99883 * 13 11 9 17 17 C 1.47066 * 136.06263 * 180.02562 * 6 4 2 18 18 C 1.50697 * 109.47037 * 120.00373 * 2 1 3 19 19 C 1.34514 * 125.79212 * 239.71764 * 18 2 1 20 20 C 1.41379 * 106.84349 * 179.88645 * 19 18 2 21 21 C 1.34515 * 106.84277 * 0.37054 * 20 19 18 22 22 O 1.34302 * 108.41475 * 359.76976 * 21 20 19 23 23 H 1.09003 * 109.46544 * 59.99593 * 1 2 3 24 24 H 1.08997 * 109.47155 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47048 * 300.00410 * 1 2 3 26 26 H 1.09007 * 113.46858 * 267.91303 * 7 6 4 27 27 H 1.08993 * 113.47208 * 38.35639 * 7 6 4 28 28 H 1.09000 * 114.38223 * 272.46676 * 8 7 6 29 29 H 0.97003 * 120.00186 * 179.97438 * 12 11 9 30 30 H 1.09005 * 113.46156 * 321.64401 * 17 6 4 31 31 H 1.08998 * 113.46839 * 92.07769 * 17 6 4 32 32 H 1.08006 * 126.57661 * 0.02562 * 19 18 2 33 33 H 1.08008 * 126.57661 * 180.16063 * 20 19 18 34 34 H 1.07998 * 125.78951 * 179.75574 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1192 6 7 1.7068 -0.2500 -2.4546 7 6 0.9105 0.8648 -2.9893 8 6 1.7957 0.8248 -4.2426 9 6 1.0463 1.0220 -5.5351 10 1 0.6958 0.1657 -6.0921 11 6 0.8081 2.2956 -6.0065 12 7 0.1537 2.4677 -7.1341 13 14 1.4149 3.7767 -5.0433 14 1 2.7838 4.1336 -5.4948 15 1 0.5023 4.9252 -5.2744 16 1 1.4409 3.4487 -3.5952 17 6 1.9857 -0.6453 -3.8434 18 6 2.0323 -0.7105 1.2304 19 6 2.8133 -0.1737 2.1851 20 6 3.0385 -1.1853 3.1468 21 6 2.3886 -2.2822 2.7182 22 8 1.7809 -1.9887 1.5570 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.1293 0.6015 -3.1837 27 1 1.0124 1.7856 -2.4151 28 1 2.7012 1.4276 -4.1734 29 1 -0.0143 3.3637 -7.4656 30 1 3.0021 -1.0087 -3.9954 31 1 1.2322 -1.3105 -4.2651 32 1 3.1933 0.8369 2.2128 33 1 3.6234 -1.0955 4.0503 34 1 2.3604 -3.2369 3.2222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598034114.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:56 Heat of formation + Delta-G solvation = 15.208419 kcal Electronic energy + Delta-G solvation = -17952.816367 eV Core-core repulsion = 15046.932750 eV Total energy + Delta-G solvation = -2905.883617 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.52315 -39.76759 -37.39651 -34.10949 -32.81796 -32.64397 -29.72057 -28.43346 -25.66745 -25.20224 -24.02360 -21.71779 -20.95674 -19.81858 -18.49574 -17.27355 -17.16211 -16.62070 -15.84042 -15.41639 -15.07846 -14.33751 -14.14089 -13.74750 -13.19521 -12.98010 -12.76498 -12.73798 -12.62284 -12.15465 -11.97524 -11.75206 -11.50903 -11.44679 -10.87656 -10.72050 -10.13514 -9.88406 -9.83264 -9.40854 -9.17938 -8.70052 -8.41325 -8.09757 -6.24463 -4.27507 1.78538 2.62840 2.94909 3.03940 3.17737 3.25935 3.27619 3.43925 4.27077 4.53200 4.71658 4.97140 4.98774 5.00787 5.11990 5.22844 5.59549 5.63751 5.73138 5.83472 5.90587 5.90990 6.02215 6.05856 6.14743 6.23424 6.28135 6.36946 6.48152 6.54573 7.09912 7.21721 7.50578 8.26188 8.34754 8.55330 8.79402 9.36283 10.87556 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043001 B = 0.005155 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.996646 B = 5430.241695 C = 5686.255306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.027 4.027 3 H 0.121 0.879 4 C 0.536 3.464 5 O -0.548 6.548 6 N -0.643 5.643 7 C 0.083 3.917 8 C -0.007 4.007 9 C -0.514 4.514 10 H 0.080 0.920 11 C 0.077 3.923 12 N -0.891 5.891 13 Si 0.876 3.124 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.261 1.261 17 C 0.115 3.885 18 C 0.024 3.976 19 C -0.214 4.214 20 C -0.216 4.216 21 C -0.043 4.043 22 O -0.160 6.160 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.267 0.733 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 -2.483 17.049 17.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.048 4.048 3 H 0.139 0.861 4 C 0.325 3.675 5 O -0.426 6.426 6 N -0.377 5.377 7 C -0.039 4.039 8 C -0.026 4.026 9 C -0.552 4.552 10 H 0.098 0.902 11 C -0.126 4.126 12 N -0.528 5.528 13 Si 0.703 3.297 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.185 1.185 17 C -0.007 4.007 18 C -0.028 4.028 19 C -0.233 4.233 20 C -0.235 4.235 21 C -0.111 4.111 22 O -0.054 6.054 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.164 0.836 33 H 0.164 0.836 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.543 -3.144 16.997 17.354 hybrid contribution 0.409 0.986 0.665 1.258 sum 1.952 -2.158 17.662 17.900 Atomic orbital electron populations 1.21822 0.91410 1.03503 1.03522 1.19828 0.98275 0.99128 0.87586 0.86123 1.19801 0.80878 0.84029 0.82827 1.90688 1.39347 1.26589 1.86019 1.49917 1.51005 1.32152 1.04640 1.23980 0.97543 0.87369 0.95052 1.20758 0.95759 0.92298 0.93816 1.20767 1.35840 0.94276 1.04272 0.90193 1.25008 0.94194 0.98968 0.94465 1.69889 1.39903 1.22825 1.20167 0.86893 0.79112 0.82509 0.81235 1.20135 1.21222 1.18499 1.23125 1.00486 0.99726 0.77362 1.21656 1.01216 0.82619 0.97267 1.21515 1.04013 1.01453 0.96307 1.21738 1.05818 0.93671 1.02313 1.23988 0.99513 1.00671 0.86948 1.84037 1.58918 1.27657 1.34828 0.90443 0.91644 0.91194 0.89495 0.92190 0.92121 0.92318 0.91998 0.90098 0.83613 0.83645 0.78362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.06 37.16 0.34 -1.50 16 2 C -0.03 -0.40 3.01 -92.92 -0.28 -0.68 16 3 H 0.12 1.54 8.10 -51.93 -0.42 1.12 16 4 C 0.54 10.13 7.40 -10.98 -0.08 10.05 16 5 O -0.55 -12.27 16.58 -1.30 -0.02 -12.29 16 6 N -0.64 -12.16 3.64 -185.21 -0.67 -12.83 16 7 C 0.08 1.54 5.71 -8.51 -0.05 1.49 16 8 C -0.01 -0.14 2.97 -91.25 -0.27 -0.41 16 9 C -0.51 -13.00 9.37 -34.44 -0.32 -13.33 16 10 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 11 C 0.08 2.02 5.47 -17.82 -0.10 1.93 16 12 N -0.89 -25.27 13.96 55.43 0.77 -24.50 16 13 Si 0.88 19.39 27.15 -169.99 -4.61 14.77 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 15 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.26 -5.28 5.71 56.52 0.32 -4.96 16 17 C 0.11 2.27 8.18 -8.50 -0.07 2.20 16 18 C 0.02 0.36 5.20 -35.63 -0.19 0.18 16 19 C -0.21 -2.87 10.78 -39.70 -0.43 -3.30 16 20 C -0.22 -2.60 10.91 -39.70 -0.43 -3.03 16 21 C -0.04 -0.53 12.09 29.42 0.36 -0.17 16 22 O -0.16 -2.53 10.35 -1.14 -0.01 -2.54 16 23 H 0.08 0.97 6.32 -51.93 -0.33 0.64 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.09 1.58 8.05 -51.93 -0.42 1.16 16 27 H 0.06 1.02 7.13 -51.93 -0.37 0.65 16 28 H 0.06 1.29 7.03 -51.93 -0.37 0.93 16 29 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 32 H 0.15 1.64 8.06 -52.48 -0.42 1.21 16 33 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.20 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 291.43 15.07 4.39 4.39 Total: -1.00 -31.07 291.43 -6.18 -37.24 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.50 Total: 2.35 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.52 Total: -6.59 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.10 Total: -37.33 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.03 Total: -14.84 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.61 Total: 14.77 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.07 -6.18 -37.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034114.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.453 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds