Wall clock time and date at job start Mon Mar 30 2020 03:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47706 * 2 1 4 4 C 1.50700 * 109.47143 * 239.99783 * 2 1 3 5 5 O 1.21282 * 120.00222 * 240.00529 * 4 2 1 6 6 N 1.34780 * 120.00120 * 60.00257 * 4 2 1 7 7 C 1.47067 * 136.05152 * 359.63028 * 6 4 2 8 8 C 1.53497 * 87.98534 * 153.13820 * 7 6 4 9 9 C 1.50697 * 114.21116 * 139.65535 * 8 7 6 10 10 H 1.07997 * 119.99821 * 266.40153 * 9 8 7 11 11 C 1.37879 * 120.00200 * 86.39769 * 9 8 7 12 12 N 1.31507 * 119.99952 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99700 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46920 * 90.00384 * 13 11 9 15 15 H 1.48499 * 109.47159 * 209.99784 * 13 11 9 16 16 H 1.48500 * 109.47652 * 329.99883 * 13 11 9 17 17 C 1.47066 * 136.06263 * 180.02562 * 6 4 2 18 18 C 1.50697 * 109.47037 * 120.00373 * 2 1 3 19 19 C 1.34514 * 125.79212 * 239.71764 * 18 2 1 20 20 C 1.41379 * 106.84349 * 179.88645 * 19 18 2 21 21 C 1.34515 * 106.84277 * 0.37054 * 20 19 18 22 22 O 1.34302 * 108.41475 * 359.76976 * 21 20 19 23 23 H 1.09003 * 109.46544 * 59.99593 * 1 2 3 24 24 H 1.08997 * 109.47155 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47048 * 300.00410 * 1 2 3 26 26 H 1.09007 * 113.46858 * 267.91303 * 7 6 4 27 27 H 1.08993 * 113.47208 * 38.35639 * 7 6 4 28 28 H 1.09000 * 114.38223 * 272.46676 * 8 7 6 29 29 H 0.97003 * 120.00186 * 179.97438 * 12 11 9 30 30 H 1.09005 * 113.46156 * 321.64401 * 17 6 4 31 31 H 1.08998 * 113.46839 * 92.07769 * 17 6 4 32 32 H 1.08006 * 126.57661 * 0.02562 * 19 18 2 33 33 H 1.08008 * 126.57661 * 180.16063 * 20 19 18 34 34 H 1.07998 * 125.78951 * 179.75574 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1192 6 7 1.7068 -0.2500 -2.4546 7 6 0.9105 0.8648 -2.9893 8 6 1.7957 0.8248 -4.2426 9 6 1.0463 1.0220 -5.5351 10 1 0.6958 0.1657 -6.0921 11 6 0.8081 2.2956 -6.0065 12 7 0.1537 2.4677 -7.1341 13 14 1.4149 3.7767 -5.0433 14 1 2.7838 4.1336 -5.4948 15 1 0.5023 4.9252 -5.2744 16 1 1.4409 3.4487 -3.5952 17 6 1.9857 -0.6453 -3.8434 18 6 2.0323 -0.7105 1.2304 19 6 2.8133 -0.1737 2.1851 20 6 3.0385 -1.1853 3.1468 21 6 2.3886 -2.2822 2.7182 22 8 1.7809 -1.9887 1.5570 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.1293 0.6015 -3.1837 27 1 1.0124 1.7856 -2.4151 28 1 2.7012 1.4276 -4.1734 29 1 -0.0143 3.3637 -7.4656 30 1 3.0021 -1.0087 -3.9954 31 1 1.2322 -1.3105 -4.2651 32 1 3.1933 0.8369 2.2128 33 1 3.6234 -1.0955 4.0503 34 1 2.3604 -3.2369 3.2222 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598034114.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:56 Heat of formation + Delta-G solvation = -4.498608 kcal Electronic energy + Delta-G solvation = -17953.670928 eV Core-core repulsion = 15046.932750 eV Total energy + Delta-G solvation = -2906.738178 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.51754 -41.28737 -38.95646 -35.29791 -34.61752 -33.77359 -31.31724 -29.48569 -27.34639 -26.77010 -25.23327 -22.69305 -22.30470 -21.17805 -19.91207 -19.09737 -18.31051 -18.01420 -16.99141 -16.77646 -16.57025 -15.87809 -15.50717 -15.11595 -14.73576 -14.47690 -14.04890 -13.69295 -13.61493 -13.52645 -13.41841 -13.22963 -12.71576 -12.64186 -12.52742 -12.39114 -11.79796 -11.58376 -11.20954 -10.87201 -10.77264 -10.60266 -9.66379 -9.39846 -8.25064 -6.33499 0.77646 1.45246 1.47592 1.51566 1.57912 1.67170 1.98301 2.14892 2.41974 3.06676 3.41774 3.54260 3.94579 4.01600 4.07017 4.20258 4.26842 4.32463 4.46401 4.60150 4.68295 4.70668 4.76287 4.81393 4.89802 4.96899 5.00825 5.10391 5.23507 5.38697 5.61934 5.64003 6.25015 6.30331 6.72690 6.82029 7.06146 7.34377 8.90505 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043001 B = 0.005155 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.996646 B = 5430.241695 C = 5686.255306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.020 4.020 3 H 0.147 0.853 4 C 0.532 3.468 5 O -0.589 6.589 6 N -0.641 5.641 7 C 0.098 3.902 8 C -0.014 4.014 9 C -0.515 4.515 10 H 0.039 0.961 11 C 0.020 3.980 12 N -0.945 5.945 13 Si 0.940 3.060 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.223 1.223 17 C 0.112 3.888 18 C -0.012 4.012 19 C -0.212 4.212 20 C -0.223 4.223 21 C -0.049 4.049 22 O -0.190 6.190 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.268 0.732 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.971 -1.127 20.177 20.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.041 4.041 3 H 0.165 0.835 4 C 0.323 3.677 5 O -0.470 6.470 6 N -0.374 5.374 7 C -0.024 4.024 8 C -0.033 4.033 9 C -0.553 4.553 10 H 0.057 0.943 11 C -0.178 4.178 12 N -0.584 5.584 13 Si 0.763 3.237 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.145 1.145 17 C -0.010 4.010 18 C -0.062 4.062 19 C -0.231 4.231 20 C -0.242 4.242 21 C -0.116 4.116 22 O -0.086 6.086 23 H 0.098 0.902 24 H 0.069 0.931 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.184 0.816 33 H 0.192 0.808 34 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.133 -1.797 20.152 20.344 hybrid contribution 0.258 0.411 -0.326 0.585 sum 2.391 -1.386 19.826 20.018 Atomic orbital electron populations 1.21816 0.89952 1.03025 1.04891 1.19891 0.99370 0.99644 0.85180 0.83532 1.20639 0.79852 0.83631 0.83587 1.90662 1.41177 1.28562 1.86593 1.49892 1.50979 1.32171 1.04401 1.23766 0.96900 0.88374 0.93381 1.20686 0.96193 0.93381 0.93059 1.20917 1.35596 0.93089 1.05683 0.94301 1.25890 0.94276 1.02309 0.95347 1.70045 1.42231 1.23591 1.22549 0.85859 0.77997 0.78029 0.81785 1.20226 1.21506 1.14510 1.23028 1.00461 0.98982 0.78575 1.21863 1.03186 0.82947 0.98239 1.21921 1.02665 1.02617 0.95902 1.22151 1.05870 0.93088 1.03066 1.24812 0.98568 1.02314 0.85953 1.84012 1.59973 1.28314 1.36337 0.90176 0.93104 0.88595 0.89219 0.89331 0.91382 0.92340 0.92016 0.90557 0.81575 0.80848 0.75091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.06 71.98 0.65 -2.51 16 2 C -0.02 -0.54 3.01 -12.29 -0.04 -0.58 16 3 H 0.15 3.13 8.10 -2.39 -0.02 3.11 16 4 C 0.53 19.32 7.40 87.66 0.65 19.97 16 5 O -0.59 -26.19 16.58 3.52 0.06 -26.14 16 6 N -0.64 -23.17 3.64 -858.27 -3.12 -26.30 16 7 C 0.10 3.36 5.71 83.18 0.47 3.83 16 8 C -0.01 -0.56 2.97 -11.20 -0.03 -0.60 16 9 C -0.51 -26.43 9.37 25.60 0.24 -26.19 16 10 H 0.04 2.25 8.06 -2.91 -0.02 2.23 16 11 C 0.02 1.07 5.47 84.66 0.46 1.53 16 12 N -0.95 -54.97 13.96 21.45 0.30 -54.67 16 13 Si 0.94 38.68 27.15 68.60 1.86 40.54 16 14 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.22 -7.71 5.71 99.48 0.57 -7.14 16 17 C 0.11 4.40 8.18 83.19 0.68 5.08 16 18 C -0.01 -0.34 5.20 24.83 0.13 -0.21 16 19 C -0.21 -5.08 10.78 22.19 0.24 -4.84 16 20 C -0.22 -4.69 10.91 22.19 0.24 -4.45 16 21 C -0.05 -1.11 12.09 66.97 0.81 -0.30 16 22 O -0.19 -5.80 10.35 4.07 0.04 -5.76 16 23 H 0.08 1.75 6.32 -2.39 -0.02 1.73 16 24 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.09 3.06 8.05 -2.38 -0.02 3.04 16 27 H 0.09 2.58 7.13 -2.39 -0.02 2.56 16 28 H 0.07 2.74 7.03 -2.39 -0.02 2.72 16 29 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.08 3.04 8.10 -2.39 -0.02 3.02 16 32 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 34 H 0.23 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -69.07 291.43 4.60 -64.47 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.95 Total: 17.11 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 4.51 Total: -9.25 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -2.82 Total: -80.97 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: 0.10 Total: -31.90 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.86 Total: 40.54 kcal Total: -69.07 4.60 -64.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598034114.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.970 kcal (2) G-P(sol) polarization free energy of solvation -69.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds