Wall clock time and date at job start Mon Mar 30 2020 04:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34232 * 117.00112 * 2 1 4 4 O 1.20826 * 119.99795 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00228 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46875 * 319.99889 * 5 3 2 7 7 N 1.46897 * 109.47203 * 200.00510 * 5 3 2 8 8 C 1.52997 * 109.47198 * 79.99878 * 5 3 2 9 9 H 1.09000 * 109.47084 * 303.51977 * 8 5 3 10 10 C 1.50699 * 109.46831 * 63.51760 * 8 5 3 11 11 H 1.08000 * 120.00000 * 55.15835 * 10 8 5 12 12 C 1.37877 * 120.00385 * 235.43026 * 10 8 5 13 13 N 1.31515 * 119.99637 * 5.36023 * 12 10 8 14 14 Si 1.86792 * 120.00266 * 185.35611 * 12 10 8 15 15 H 1.48497 * 109.47220 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47126 * 120.00258 * 14 12 10 17 17 H 1.48493 * 109.47325 * 240.00054 * 14 12 10 18 18 C 1.50703 * 109.47018 * 183.51877 * 8 5 3 19 19 C 1.38236 * 119.99742 * 293.21160 * 18 8 5 20 20 C 1.38235 * 119.99651 * 179.78710 * 19 18 8 21 21 C 1.38242 * 119.99764 * 0.44826 * 20 19 18 22 22 C 1.38235 * 120.00177 * 359.80689 * 21 20 19 23 23 C 1.38230 * 119.99809 * 113.48660 * 18 8 5 24 24 H 1.09000 * 109.47269 * 59.99301 * 1 2 3 25 25 H 1.08998 * 109.47540 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47244 * 299.99865 * 1 2 3 27 27 H 1.00903 * 110.99600 * 305.36323 * 7 5 3 28 28 H 1.00896 * 111.00672 * 69.31912 * 7 5 3 29 29 H 0.96998 * 120.00414 * 179.97438 * 13 12 10 30 30 H 1.07998 * 120.00003 * 0.02562 * 19 18 8 31 31 H 1.07994 * 120.00241 * 180.27428 * 20 19 18 32 32 H 1.08002 * 119.99674 * 179.83264 * 21 20 19 33 33 H 1.07995 * 120.00039 * 180.02562 * 22 21 20 34 34 H 1.08001 * 120.00103 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9706 0.5076 0.6597 7 7 3.9874 2.6000 0.4733 8 6 4.0882 1.0517 -1.4214 9 1 3.7237 0.0953 -1.7963 10 6 3.5991 2.1613 -2.3161 11 1 3.7965 3.1910 -2.0567 12 6 2.8949 1.8624 -3.4632 13 7 2.5584 0.6178 -3.7225 14 14 2.4185 3.2251 -4.6486 15 1 2.9125 4.5264 -4.1312 16 1 3.0248 2.9592 -5.9779 17 1 0.9402 3.2730 -4.7796 18 6 5.5951 1.0446 -1.4077 19 6 6.2890 2.2008 -1.1035 20 6 7.6712 2.1932 -1.0866 21 6 8.3596 1.0315 -1.3830 22 6 7.6657 -0.1233 -1.6924 23 6 6.2835 -0.1167 -1.7049 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 3.5547 3.3324 -0.0695 28 1 3.7885 2.7127 1.4560 29 1 2.0626 0.4074 -4.5292 30 1 5.7512 3.1091 -0.8752 31 1 8.2133 3.0953 -0.8446 32 1 9.4396 1.0263 -1.3724 33 1 8.2035 -1.0309 -1.9235 34 1 5.7414 -1.0190 -1.9465 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700345240.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:27 Heat of formation + Delta-G solvation = -65.003420 kcal Electronic energy + Delta-G solvation = -18575.578591 eV Core-core repulsion = 15666.216728 eV Total energy + Delta-G solvation = -2909.361863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.77116 -38.34580 -36.03746 -34.81069 -32.41884 -30.61365 -29.92363 -27.95110 -26.93942 -24.91454 -22.76677 -21.58006 -20.36307 -19.33389 -17.22812 -16.25626 -16.03756 -15.80749 -15.66493 -14.87539 -14.49879 -14.16020 -13.71702 -13.27633 -12.97000 -12.63391 -12.48605 -12.13081 -11.82514 -11.57755 -11.40830 -11.23584 -10.99034 -10.56281 -10.28008 -10.17117 -10.09094 -9.95278 -9.37748 -9.17435 -8.63309 -8.20995 -7.96062 -7.62973 -6.14911 -4.17483 2.31030 2.36801 3.11526 3.26547 3.34416 3.39075 3.59197 4.36307 4.77161 5.20377 5.28216 5.56362 5.59129 5.68575 5.73507 5.78499 5.85615 5.94533 6.03847 6.26937 6.37490 6.55751 6.66512 6.92348 6.99219 7.17577 7.31108 7.37420 7.48916 7.64246 7.78745 7.88506 7.99355 8.07182 8.24961 8.62408 8.91088 9.47480 10.92849 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016725 B = 0.010066 C = 0.007771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.775942 B = 2780.840626 C = 3602.085835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.359 6.359 3 C 0.456 3.544 4 O -0.522 6.522 5 C 0.115 3.885 6 H 0.085 0.915 7 N -0.808 5.808 8 C 0.073 3.927 9 H 0.088 0.912 10 C -0.508 4.508 11 H 0.064 0.936 12 C 0.070 3.930 13 N -0.885 5.885 14 Si 0.892 3.108 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.286 1.286 18 C -0.026 4.026 19 C -0.080 4.080 20 C -0.140 4.140 21 C -0.150 4.150 22 C -0.135 4.135 23 C -0.130 4.130 24 H 0.059 0.941 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.358 0.642 28 H 0.324 0.676 29 H 0.263 0.737 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.621 -1.360 6.651 7.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.274 6.274 3 C 0.298 3.702 4 O -0.410 6.410 5 C 0.000 4.000 6 H 0.103 0.897 7 N -0.338 5.338 8 C 0.054 3.946 9 H 0.106 0.894 10 C -0.546 4.546 11 H 0.082 0.918 12 C -0.133 4.133 13 N -0.522 5.522 14 Si 0.720 3.280 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.212 1.212 18 C -0.027 4.027 19 C -0.098 4.098 20 C -0.158 4.158 21 C -0.168 4.168 22 C -0.153 4.153 23 C -0.148 4.148 24 H 0.078 0.922 25 H 0.108 0.892 26 H 0.068 0.932 27 H 0.175 0.825 28 H 0.135 0.865 29 H 0.073 0.927 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.019 -1.400 6.290 7.116 hybrid contribution -1.571 0.854 -0.679 1.913 sum 1.448 -0.546 5.611 5.820 Atomic orbital electron populations 1.23039 0.78345 1.02488 1.01624 1.86546 1.22015 1.34690 1.84142 1.25362 0.93752 0.80864 0.70215 1.90530 1.67277 1.36639 1.46541 1.21611 0.83615 0.92543 1.02194 0.89686 1.59302 1.63775 1.03725 1.07017 1.18093 0.87317 1.01386 0.87809 0.89442 1.20935 1.34397 0.92466 1.06767 0.91837 1.24980 0.94838 0.95526 0.97970 1.69887 1.38446 1.17646 1.26232 0.86519 0.78005 0.82509 0.80959 1.19439 1.20897 1.21183 1.20352 0.97286 0.91871 0.93187 1.21202 0.92573 0.99149 0.96894 1.21070 0.95069 0.97262 1.02410 1.20830 0.98454 0.93830 1.03682 1.20901 0.94496 0.97522 1.02359 1.21110 0.93705 0.98371 1.01640 0.92191 0.89160 0.93170 0.82534 0.86500 0.92741 0.85141 0.87698 0.87910 0.87697 0.87013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.56 101.05 1.07 1.73 16 2 O -0.36 -7.34 10.57 -39.26 -0.41 -7.76 16 3 C 0.46 9.87 6.59 36.01 0.24 10.11 16 4 O -0.52 -12.14 15.87 -18.75 -0.30 -12.44 16 5 C 0.11 2.32 3.02 -68.87 -0.21 2.11 16 6 H 0.09 1.58 8.14 -51.93 -0.42 1.15 16 7 N -0.81 -14.53 6.49 -5.66 -0.04 -14.57 16 8 C 0.07 1.69 2.20 -92.92 -0.20 1.48 16 9 H 0.09 2.27 6.67 -51.93 -0.35 1.92 16 10 C -0.51 -13.01 6.49 -34.44 -0.22 -13.23 16 11 H 0.06 1.63 6.47 -52.49 -0.34 1.29 16 12 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 13 N -0.89 -24.58 12.62 55.43 0.70 -23.88 16 14 Si 0.89 21.39 29.54 -169.99 -5.02 16.36 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 C -0.03 -0.57 4.78 -104.62 -0.50 -1.07 16 19 C -0.08 -1.60 8.31 -39.58 -0.33 -1.93 16 20 C -0.14 -2.49 10.05 -39.58 -0.40 -2.89 16 21 C -0.15 -2.55 10.05 -39.58 -0.40 -2.95 16 22 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 23 C -0.13 -2.61 9.67 -39.59 -0.38 -3.00 16 24 H 0.06 1.09 8.13 -51.93 -0.42 0.67 16 25 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.05 0.75 8.13 -51.92 -0.42 0.33 16 27 H 0.36 7.01 6.83 -39.29 -0.27 6.74 16 28 H 0.32 4.99 9.08 -39.29 -0.36 4.64 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.13 2.62 6.20 -52.49 -0.33 2.29 16 31 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 32 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 2.19 7.96 -52.49 -0.42 1.77 16 LS Contribution 291.85 15.07 4.40 4.40 Total: -1.00 -29.08 291.85 -6.65 -35.73 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -4.15 Total: 12.78 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -1.83 Total: -10.63 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.66 Total: -38.45 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.71 Total: -20.20 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.08 -6.65 -35.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700345240.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.272 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds