Wall clock time and date at job start Mon Mar 30 2020 03:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09006 * 110.21332 * 2 1 4 4 C 1.54481 * 110.24723 * 121.92860 * 2 1 3 5 5 H 1.09003 * 110.96689 * 26.26105 * 4 2 1 6 6 C 1.50695 * 110.96787 * 262.53553 * 4 2 1 7 7 H 1.08004 * 120.00546 * 0.27733 * 6 4 2 8 8 C 1.37885 * 119.99721 * 179.97438 * 6 4 2 9 9 N 1.31514 * 120.00035 * 0.02562 * 8 6 4 10 10 Si 1.86803 * 119.99853 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47093 * 60.00328 * 10 8 6 12 12 H 1.48495 * 109.47002 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47239 * 300.00048 * 10 8 6 14 14 C 1.54624 * 101.76126 * 144.41686 * 4 2 1 15 15 C 1.51279 * 104.19999 * 335.20056 * 14 4 2 16 16 O 1.21277 * 124.94439 * 196.25274 * 15 14 4 17 17 N 1.34429 * 110.11325 * 16.25540 * 15 14 4 18 18 C 1.46499 * 124.34873 * 180.38479 * 17 15 14 19 19 C 1.50695 * 109.47146 * 270.02570 * 18 17 15 20 20 C 1.34509 * 125.79235 * 89.71700 * 19 18 17 21 21 C 1.41382 * 106.84346 * 179.88891 * 20 19 18 22 22 C 1.34517 * 106.84186 * 0.37356 * 21 20 19 23 23 O 1.34311 * 108.41852 * 359.77041 * 22 21 20 24 24 H 1.09007 * 109.46525 * 298.07061 * 1 2 3 25 25 H 1.08996 * 109.47105 * 58.06953 * 1 2 3 26 26 H 1.08993 * 109.47199 * 178.07509 * 1 2 3 27 27 H 0.97000 * 119.99706 * 179.97438 * 9 8 6 28 28 H 1.08995 * 110.48774 * 93.88187 * 14 4 2 29 29 H 1.09008 * 110.48635 * 216.52382 * 14 4 2 30 30 H 1.09004 * 109.46990 * 30.02825 * 18 17 15 31 31 H 1.09000 * 109.46725 * 150.02057 * 18 17 15 32 32 H 1.07999 * 126.58192 * 0.02562 * 20 19 18 33 33 H 1.07998 * 126.58504 * 180.15983 * 21 20 19 34 34 H 1.07991 * 125.79713 * 179.75400 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9067 1.0229 0.0000 4 6 2.0647 -0.7665 1.2301 5 1 1.3433 -1.5093 1.5706 6 6 2.4228 0.1835 2.3437 7 1 2.2855 1.2467 2.2117 8 6 2.9200 -0.3049 3.5334 9 7 3.0821 -1.5999 3.6961 10 14 3.3646 0.8728 4.9136 11 1 2.1591 1.6405 5.3168 12 1 3.8735 0.1026 6.0767 13 1 4.4152 1.8114 4.4442 14 6 3.3288 -1.4451 0.6536 15 6 3.0524 -1.5450 -0.8304 16 8 3.6579 -2.2568 -1.6034 17 7 2.0379 -0.7300 -1.1675 18 6 1.5077 -0.5885 -2.5258 19 6 2.2519 0.5076 -3.2439 20 6 3.3706 0.3511 -3.9742 21 6 3.7223 1.6299 -4.4639 22 6 2.8022 2.4928 -3.9968 23 8 1.9140 1.8074 -3.2584 24 1 -0.3632 0.4836 0.9069 25 1 -0.3633 0.5435 -0.8721 26 1 -0.3633 -1.0270 -0.0345 27 1 3.4322 -1.9434 4.5329 28 1 4.2095 -0.8297 0.8370 29 1 3.4593 -2.4377 1.0850 30 1 1.6344 -1.5274 -3.0650 31 1 0.4481 -0.3373 -2.4778 32 1 3.8977 -0.5742 -4.1540 33 1 4.5694 1.8688 -5.0899 34 1 2.7813 3.5562 -4.1834 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709907578.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:51 Heat of formation + Delta-G solvation = -41.315995 kcal Electronic energy + Delta-G solvation = -18359.338401 eV Core-core repulsion = 15451.003701 eV Total energy + Delta-G solvation = -2908.334700 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.48829 -41.31897 -37.82133 -35.52079 -34.06289 -33.38885 -31.36252 -30.67740 -27.83909 -26.49787 -24.53722 -22.73458 -21.88420 -21.74302 -20.16337 -18.76187 -18.32478 -17.47592 -17.07022 -16.67951 -16.38962 -15.96701 -15.45869 -14.87017 -14.61934 -14.27848 -14.04357 -13.78430 -13.73178 -13.59462 -13.09193 -12.92509 -12.76931 -12.72209 -12.55367 -12.20251 -12.10445 -11.35239 -11.12724 -10.88397 -10.75480 -10.43666 -9.81518 -9.43861 -8.14982 -6.25583 0.67729 1.47108 1.48132 1.54485 1.55278 1.64507 2.10906 2.30250 2.45617 3.17781 3.65556 3.79963 3.96787 4.11386 4.19820 4.25515 4.38636 4.45198 4.51079 4.67780 4.80579 4.88174 4.99785 5.01776 5.05589 5.16882 5.35417 5.40157 5.56557 5.60573 5.73337 5.83400 6.05391 6.20617 6.29350 6.82359 7.20719 7.43759 8.94701 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.006407 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.519723 B = 4369.368249 C = 4616.036624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.135 3.865 3 H 0.066 0.934 4 C 0.051 3.949 5 H 0.031 0.969 6 C -0.528 4.528 7 H 0.066 0.934 8 C 0.019 3.981 9 N -0.917 5.917 10 Si 0.954 3.046 11 H -0.266 1.266 12 H -0.289 1.289 13 H -0.274 1.274 14 C -0.128 4.128 15 C 0.516 3.484 16 O -0.581 6.581 17 N -0.604 5.604 18 C 0.200 3.800 19 C -0.048 4.048 20 C -0.209 4.209 21 C -0.231 4.231 22 C -0.033 4.033 23 O -0.183 6.183 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.263 0.737 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.168 0.832 34 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 7.528 -12.092 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 H 0.084 0.916 4 C 0.032 3.968 5 H 0.049 0.951 6 C -0.566 4.566 7 H 0.084 0.916 8 C -0.181 4.181 9 N -0.555 5.555 10 Si 0.780 3.220 11 H -0.191 1.191 12 H -0.215 1.215 13 H -0.199 1.199 14 C -0.168 4.168 15 C 0.306 3.694 16 O -0.463 6.463 17 N -0.336 5.336 18 C 0.078 3.922 19 C -0.099 4.099 20 C -0.230 4.230 21 C -0.250 4.250 22 C -0.100 4.100 23 O -0.079 6.079 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.155 0.845 33 H 0.186 0.814 34 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -4.535 7.151 -12.265 14.904 hybrid contribution 0.955 0.121 0.812 1.260 sum -3.580 7.273 -11.452 14.031 Atomic orbital electron populations 1.21946 0.92514 1.02493 1.03060 1.21954 0.95933 0.95159 0.83642 0.91645 1.19599 0.91573 0.94338 0.91251 0.95100 1.21262 1.43465 0.93412 0.98444 0.91625 1.25718 0.95273 0.96397 1.00698 1.70060 1.45579 1.13375 1.26521 0.85667 0.78865 0.78945 0.78545 1.19054 1.21454 1.19898 1.22295 1.02365 1.02434 0.89733 1.21551 0.78533 0.77686 0.91587 1.90565 1.53705 1.43275 1.58738 1.48592 1.34572 1.42125 1.08309 1.19857 0.98116 0.93928 0.80250 1.23052 0.99649 0.83662 1.03557 1.21877 0.98032 1.00100 1.02967 1.22150 1.03653 0.92306 1.06879 1.24871 0.89928 0.99589 0.95619 1.84019 1.47565 1.18734 1.57623 0.90715 0.90786 0.92245 0.92807 0.90669 0.91207 0.87130 0.85925 0.84474 0.81435 0.74089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 8.70 71.98 0.63 -3.60 16 2 C 0.14 5.07 3.47 45.45 0.16 5.23 16 3 H 0.07 2.55 7.74 -2.38 -0.02 2.54 16 4 C 0.05 2.39 2.47 -10.48 -0.03 2.36 16 5 H 0.03 1.55 7.91 -2.39 -0.02 1.53 16 6 C -0.53 -26.66 8.39 25.60 0.21 -26.44 16 7 H 0.07 3.19 7.60 -2.91 -0.02 3.17 16 8 C 0.02 1.00 5.37 84.66 0.45 1.46 16 9 N -0.92 -50.92 12.84 21.45 0.28 -50.65 16 10 Si 0.95 41.32 29.54 68.60 2.03 43.35 16 11 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 12 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 14 C -0.13 -6.13 5.81 30.59 0.18 -5.95 16 15 C 0.52 22.88 8.02 87.90 0.71 23.58 16 16 O -0.58 -28.04 17.60 -3.02 -0.05 -28.10 16 17 N -0.60 -22.27 2.77 -798.46 -2.21 -24.48 16 18 C 0.20 5.88 6.25 85.63 0.53 6.41 16 19 C -0.05 -1.47 6.90 24.83 0.17 -1.30 16 20 C -0.21 -6.41 10.81 22.19 0.24 -6.17 16 21 C -0.23 -5.69 10.91 22.19 0.24 -5.45 16 22 C -0.03 -0.72 12.09 66.97 0.81 0.09 16 23 O -0.18 -5.16 10.65 -2.64 -0.03 -5.19 16 24 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 25 H 0.07 1.77 7.09 -2.39 -0.02 1.76 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 27 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.07 3.80 7.89 -2.39 -0.02 3.78 16 29 H 0.07 3.60 8.14 -2.38 -0.02 3.58 16 30 H 0.11 3.16 7.93 -2.38 -0.02 3.14 16 31 H 0.12 2.84 6.49 -2.39 -0.02 2.82 16 32 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 33 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 34 H 0.24 2.91 8.06 -2.92 -0.02 2.89 16 Total: -1.00 -63.38 293.47 5.41 -57.97 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 1.09 Total: 16.87 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 4.31 Total: -9.77 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.93 Total: -75.12 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.08 Total: -33.29 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -63.38 5.41 -57.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709907578.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.651 kcal (2) G-P(sol) polarization free energy of solvation -63.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds