Wall clock time and date at job start Mon Mar 30 2020 03:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42899 * 109.47147 * 2 1 4 4 C 1.35897 * 117.00255 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.90622 * 359.97438 * 4 3 2 6 6 C 1.40637 * 119.46470 * 180.02562 * 5 4 3 7 7 C 1.41414 * 120.05904 * 179.66666 * 6 5 4 8 8 H 1.07997 * 120.00158 * 334.31543 * 7 6 5 9 9 C 1.39923 * 119.99587 * 154.58147 * 7 6 5 10 10 N 1.30825 * 120.00263 * 342.99195 * 9 7 6 11 11 Si 1.86809 * 119.99662 * 162.98534 * 9 7 6 12 12 H 1.48502 * 109.47012 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46721 * 120.00446 * 11 9 7 14 14 H 1.48496 * 109.46999 * 240.00223 * 11 9 7 15 15 C 1.40468 * 119.87838 * 359.95503 * 6 5 4 16 16 C 1.38691 * 120.15123 * 359.60178 * 15 6 5 17 17 C 1.38656 * 119.91231 * 179.97438 * 4 3 2 18 18 C 1.51725 * 131.90207 * 0.94753 * 17 4 3 19 19 H 1.08997 * 110.93331 * 282.27285 * 18 17 4 20 20 N 1.46907 * 110.93143 * 45.94486 * 18 17 4 21 21 C 1.54683 * 101.95181 * 164.10271 * 18 17 4 22 22 O 1.36190 * 129.66754 * 180.72799 * 16 15 6 23 23 H 1.09005 * 109.47419 * 59.99788 * 1 2 3 24 24 H 1.09002 * 109.47341 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47327 * 300.00058 * 1 2 3 26 26 H 1.09001 * 109.46986 * 240.00326 * 2 1 3 27 27 H 1.08997 * 109.47160 * 119.99978 * 2 1 3 28 28 H 1.08000 * 120.26583 * 0.07845 * 5 4 3 29 29 H 0.96999 * 120.00103 * 179.97438 * 10 9 7 30 30 H 1.07998 * 119.92022 * 179.84811 * 15 6 5 31 31 H 1.00899 * 110.99598 * 179.97438 * 20 18 17 32 32 H 1.00899 * 110.99951 * 303.94746 * 20 18 17 33 33 H 1.09000 * 110.74621 * 267.07065 * 21 18 17 34 34 H 1.09007 * 110.73583 * 143.74558 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1940 0.4276 -0.0005 6 6 5.5868 0.6227 -0.0005 7 6 6.4581 -0.4912 0.0066 8 1 6.1266 -1.4334 0.4172 9 6 7.7516 -0.3709 -0.5132 10 7 8.0520 0.6351 -1.2938 11 14 9.0496 -1.6467 -0.0924 12 1 8.4605 -2.6761 0.8012 13 1 9.5320 -2.2921 -1.3398 14 1 10.1881 -0.9863 0.5954 15 6 6.1109 1.9259 -0.0015 16 6 5.2581 3.0197 -0.0108 17 6 3.8816 2.8075 -0.0011 18 6 3.2234 4.1744 0.0174 19 1 2.8439 4.4373 -0.9700 20 7 2.1516 4.2273 1.0207 21 6 4.4020 5.0921 0.4190 22 8 5.5504 4.3498 -0.0267 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.7843 -0.5716 -0.0014 29 1 8.9488 0.7187 -1.6538 30 1 7.1803 2.0765 0.0009 31 1 1.7134 5.1361 1.0342 32 1 1.4709 3.4997 0.8614 33 1 4.4288 5.2357 1.4992 34 1 4.3386 6.0500 -0.0973 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713795537.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:31 Heat of formation + Delta-G solvation = -56.354625 kcal Electronic energy + Delta-G solvation = -18285.419622 eV Core-core repulsion = 15376.432798 eV Total energy + Delta-G solvation = -2908.986824 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.96723 -38.29974 -35.80737 -33.95135 -33.12034 -31.21883 -29.23395 -28.19455 -27.11646 -25.26057 -23.24876 -21.63246 -20.27316 -20.04348 -17.97648 -16.24562 -15.87449 -15.69613 -15.55315 -15.34475 -14.92943 -14.32997 -13.73267 -13.48492 -13.27219 -12.70405 -12.63285 -12.50168 -11.93289 -11.72569 -11.46096 -11.24929 -11.15845 -10.98384 -10.69491 -10.36964 -10.35872 -9.93368 -9.66471 -9.52513 -8.94330 -8.34378 -7.18607 -6.90748 -6.68064 -4.48845 2.66931 2.99497 3.05396 3.10345 3.14264 3.88010 3.98263 4.33900 4.49255 5.04536 5.27897 5.33694 5.39304 5.55572 5.61194 5.64245 5.78749 5.86118 6.09585 6.09927 6.18734 6.24961 6.63026 6.76842 6.83312 7.01149 7.14093 7.30879 7.57773 7.68495 7.85899 7.92457 7.97637 8.25101 8.31092 8.62070 8.81234 8.90239 10.11242 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.007981 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.594110 B = 3507.385902 C = 4758.484227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.331 6.331 4 C 0.198 3.802 5 C -0.327 4.327 6 C 0.164 3.836 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.076 3.924 10 N -0.781 5.781 11 Si 0.910 3.090 12 H -0.259 1.259 13 H -0.274 1.274 14 H -0.270 1.270 15 C -0.202 4.202 16 C 0.143 3.857 17 C -0.312 4.312 18 C 0.131 3.869 19 H 0.037 0.963 20 N -0.835 5.835 21 C 0.059 3.941 22 O -0.315 6.315 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.105 0.895 29 H 0.283 0.717 30 H 0.124 0.876 31 H 0.326 0.674 32 H 0.351 0.649 33 H 0.074 0.926 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 1.612 1.506 8.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.246 6.246 4 C 0.153 3.847 5 C -0.348 4.348 6 C 0.161 3.839 7 C -0.485 4.485 8 H 0.100 0.900 9 C -0.143 4.143 10 N -0.405 5.405 11 Si 0.734 3.266 12 H -0.183 1.183 13 H -0.199 1.199 14 H -0.195 1.195 15 C -0.222 4.222 16 C 0.098 3.902 17 C -0.314 4.314 18 C 0.020 3.980 19 H 0.054 0.946 20 N -0.366 5.366 21 C -0.017 4.017 22 O -0.229 6.229 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.094 0.906 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.165 0.835 33 H 0.093 0.907 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.244 1.818 1.814 7.686 hybrid contribution -0.080 -0.549 -0.753 0.935 sum -7.324 1.269 1.062 7.509 Atomic orbital electron populations 1.21758 0.94040 1.02037 1.02739 1.22523 0.94301 0.83445 1.01292 1.85826 1.21314 1.27882 1.89600 1.17712 0.80105 0.92127 0.94719 1.20915 0.94134 0.95371 1.24336 1.16976 0.90356 0.91746 0.84844 1.19592 0.96350 0.97599 1.34915 0.89954 1.25978 0.99457 0.96335 0.92571 1.69857 1.21494 1.28065 1.21062 0.86237 0.80182 0.80875 0.79327 1.18286 1.19885 1.19520 1.20418 0.98935 0.88599 1.14241 1.19087 0.92139 0.82826 0.96150 1.18949 0.93038 0.90802 1.28652 1.20989 0.91566 0.93426 0.92054 0.94567 1.58738 1.16698 1.08074 1.53063 1.23645 0.83862 0.94285 0.99920 1.86775 1.37518 1.15893 1.82739 0.92154 0.91119 0.91978 0.92598 0.92542 0.87687 0.90624 0.85810 0.86267 0.83492 0.90747 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 10.28 37.16 0.38 -1.41 16 2 C 0.06 0.97 5.46 37.16 0.20 1.18 16 3 O -0.33 -6.62 8.75 -19.42 -0.17 -6.79 16 4 C 0.20 4.65 6.66 -39.42 -0.26 4.39 16 5 C -0.33 -8.12 8.78 -38.67 -0.34 -8.46 16 6 C 0.16 4.43 5.55 -106.94 -0.59 3.84 16 7 C -0.46 -11.99 9.04 -37.74 -0.34 -12.33 16 8 H 0.08 2.06 7.90 -52.49 -0.41 1.64 16 9 C 0.08 1.90 5.14 -17.35 -0.09 1.81 16 10 N -0.78 -20.28 10.97 55.55 0.61 -19.67 16 11 Si 0.91 18.40 29.59 -169.99 -5.03 13.37 16 12 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 13 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 14 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 15 C -0.20 -5.53 8.70 -38.57 -0.34 -5.86 16 16 C 0.14 3.66 7.01 -39.02 -0.27 3.39 16 17 C -0.31 -7.43 5.89 -103.57 -0.61 -8.03 16 18 C 0.13 2.54 4.26 -67.47 -0.29 2.26 16 19 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 20 N -0.83 -13.93 9.33 -4.46 -0.04 -13.97 16 21 C 0.06 1.10 7.72 38.04 0.29 1.39 16 22 O -0.31 -7.37 11.11 -20.35 -0.23 -7.59 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.91 7.65 -51.93 -0.40 0.52 16 27 H 0.06 0.91 7.66 -51.93 -0.40 0.51 16 28 H 0.11 2.40 6.29 -52.49 -0.33 2.07 16 29 H 0.28 6.63 8.30 -40.82 -0.34 6.30 16 30 H 0.12 3.51 6.18 -52.49 -0.32 3.19 16 31 H 0.33 4.30 9.08 -39.29 -0.36 3.94 16 32 H 0.35 5.92 7.61 -39.29 -0.30 5.62 16 33 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 285.02 15.07 4.30 4.30 Total: -1.00 -29.32 285.02 -7.00 -36.32 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.19 Total: 11.89 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -2.25 Total: -17.85 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.57 Total: -33.64 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.40 Total: -14.39 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.32 -7.00 -36.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713795537.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.033 kcal (2) G-P(sol) polarization free energy of solvation -29.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds