Wall clock time and date at job start Mon Mar 30 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47424 * 308.83253 * 3 2 1 5 5 C 1.37097 * 120.00087 * 263.58667 * 4 3 2 6 6 H 1.08002 * 120.00036 * 194.34550 * 5 4 3 7 7 C 1.38948 * 119.99791 * 14.33556 * 5 4 3 8 8 N 1.31402 * 120.00318 * 12.16586 * 7 5 4 9 9 Si 1.86801 * 119.99912 * 192.15896 * 7 5 4 10 10 H 1.48498 * 109.47079 * 90.00091 * 9 7 5 11 11 H 1.48502 * 109.47560 * 210.00422 * 9 7 5 12 12 H 1.48502 * 109.47233 * 330.00740 * 9 7 5 13 13 C 1.34784 * 120.00100 * 83.57803 * 4 3 2 14 14 O 1.21291 * 119.99752 * 3.87047 * 13 4 3 15 15 C 1.50692 * 120.00106 * 183.86337 * 13 4 3 16 16 H 1.09004 * 109.64548 * 306.94872 * 15 13 4 17 17 C 1.53027 * 109.64273 * 67.36459 * 15 13 4 18 18 C 1.50553 * 109.89148 * 169.15924 * 17 15 13 19 19 C 1.29443 * 124.15473 * 343.00504 * 18 17 15 20 20 C 1.50067 * 124.08272 * 0.40836 * 19 18 17 21 21 H 1.08996 * 109.36156 * 222.66267 * 20 19 18 22 22 N 1.46903 * 109.24366 * 103.00531 * 20 19 18 23 23 C 1.53027 * 110.14350 * 342.87288 * 20 19 18 24 24 H 1.08995 * 109.47286 * 188.83219 * 3 2 1 25 25 H 1.09000 * 109.47177 * 68.83353 * 3 2 1 26 26 H 0.97004 * 120.00414 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.36055 * 289.54172 * 17 15 13 28 28 H 1.09003 * 109.35289 * 49.12886 * 17 15 13 29 29 H 1.07991 * 117.87885 * 162.97166 * 18 17 15 30 30 H 1.08003 * 117.95561 * 180.38679 * 19 18 17 31 31 H 1.00892 * 111.00136 * 59.38417 * 22 20 19 32 32 H 1.00900 * 110.99618 * 183.33726 * 22 20 19 33 33 H 1.09002 * 109.63852 * 289.74884 * 23 20 19 34 34 H 1.08995 * 109.81466 * 169.22321 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0967 -0.8652 1.0759 5 6 3.4500 -0.3235 2.2847 6 1 4.0206 -0.9072 2.9920 7 6 3.0742 0.9766 2.5999 8 7 2.1882 1.6025 1.8583 9 14 3.8285 1.8346 4.0778 10 1 5.0567 2.5559 3.6579 11 1 2.8529 2.8034 4.6391 12 1 4.1757 0.8265 5.1115 13 6 3.1989 -2.1944 0.8775 14 8 2.9534 -2.6654 -0.2130 15 6 3.6183 -3.0953 2.0103 16 1 4.5511 -2.7319 2.4414 17 6 2.5281 -3.1132 3.0840 18 6 2.8115 -4.2027 4.0836 19 6 3.6277 -5.1856 3.8756 20 6 4.4136 -5.3727 2.6109 21 1 4.3890 -6.4235 2.3224 22 7 5.8055 -4.9633 2.8408 23 6 3.8141 -4.5240 1.4875 24 1 2.9708 1.0162 0.1578 25 1 2.9714 -0.3702 -0.9583 26 1 1.9256 2.5100 2.0785 27 1 2.5042 -2.1485 3.5907 28 1 1.5616 -3.2965 2.6144 29 1 2.3015 -4.1605 5.0346 30 1 3.7510 -5.9163 4.6613 31 1 6.2257 -5.5084 3.5785 32 1 6.3461 -5.0271 1.9912 33 1 2.8520 -4.9397 1.1879 34 1 4.4902 -4.5120 0.6326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714175083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:40 Heat of formation + Delta-G solvation = 16.139028 kcal Electronic energy + Delta-G solvation = -18582.956845 eV Core-core repulsion = 15709.406333 eV Total energy + Delta-G solvation = -2873.550512 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.50165 -37.59511 -35.51162 -34.43678 -33.06339 -31.58874 -30.83046 -28.10543 -27.21745 -24.91054 -22.68089 -21.93522 -19.26245 -17.88562 -17.39299 -16.52953 -15.99847 -15.41208 -15.11429 -14.64549 -14.41813 -14.15152 -13.72853 -13.14252 -12.74518 -12.55646 -12.37648 -12.00169 -11.96259 -11.70415 -11.42077 -11.25695 -11.17254 -10.68157 -10.49540 -10.45872 -10.23618 -10.13106 -9.91987 -9.32386 -8.86951 -8.48232 -8.43713 -8.08295 -6.47544 -4.06591 2.55985 3.07027 3.18297 3.20538 3.62988 3.86700 4.09087 4.23348 4.79456 4.84254 4.90430 5.07563 5.17112 5.48816 5.56082 5.61104 5.78840 5.84664 6.05024 6.10112 6.33158 6.33839 6.49257 6.60828 6.71488 6.88924 6.93708 6.97609 7.25707 7.29272 7.34511 7.52768 7.59513 8.23609 8.91982 8.94571 9.31084 9.71210 10.52941 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.008963 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.698032 B = 3123.339343 C = 3920.301715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.260 3.740 3 C 0.220 3.780 4 N -0.443 5.443 5 C -0.327 4.327 6 H 0.110 0.890 7 C 0.033 3.967 8 N -0.879 5.879 9 Si 0.927 3.073 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.468 3.532 14 O -0.601 6.601 15 C -0.077 4.077 16 H 0.102 0.898 17 C -0.086 4.086 18 C -0.116 4.116 19 C -0.169 4.169 20 C 0.124 3.876 21 H 0.035 0.965 22 N -0.838 5.838 23 C -0.091 4.091 24 H 0.145 0.855 25 H 0.081 0.919 26 H 0.274 0.726 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.336 0.664 32 H 0.340 0.660 33 H 0.066 0.934 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.074 -7.720 3.875 11.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.057 4.057 3 C 0.094 3.906 4 N -0.162 5.162 5 C -0.454 4.454 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.519 5.519 9 Si 0.754 3.246 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.257 3.743 14 O -0.486 6.486 15 C -0.098 4.098 16 H 0.120 0.880 17 C -0.123 4.123 18 C -0.135 4.135 19 C -0.188 4.188 20 C 0.014 3.986 21 H 0.053 0.947 22 N -0.369 5.369 23 C -0.129 4.129 24 H 0.162 0.838 25 H 0.098 0.902 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.148 0.852 32 H 0.153 0.847 33 H 0.085 0.915 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.879 -7.029 3.529 9.256 hybrid contribution 0.894 -0.361 0.778 1.239 sum 5.772 -7.391 4.307 10.320 Atomic orbital electron populations 1.80857 1.13861 1.11499 1.11048 1.29450 0.95452 0.90343 0.90495 1.18877 0.81150 0.99715 0.90874 1.43653 1.56048 1.04205 1.12302 1.19821 1.33245 0.98117 0.94198 0.87288 1.25261 0.95384 0.97314 0.99083 1.69858 1.28647 1.14033 1.39357 0.85900 0.78651 0.79321 0.80754 1.20122 1.21031 1.19269 1.20377 0.81880 0.82543 0.89466 1.90543 1.56141 1.75172 1.26751 1.20926 1.00465 0.93805 0.94573 0.87969 1.20561 0.97994 0.98697 0.95053 1.22282 0.97528 0.94918 0.98818 1.21759 0.99886 0.99260 0.97886 1.20156 0.88459 0.96050 0.93938 0.94742 1.58703 1.02569 1.63284 1.12294 1.21441 1.00933 0.94492 0.96062 0.83831 0.90153 0.91553 0.88424 0.91353 0.88182 0.88816 0.85242 0.84672 0.91512 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.79 18.54 42.15 0.78 -12.01 16 2 C 0.26 6.42 14.02 -20.76 -0.29 6.13 16 3 C 0.22 4.96 5.09 -6.83 -0.03 4.92 16 4 N -0.44 -10.24 2.61 -117.94 -0.31 -10.54 16 5 C -0.33 -7.46 7.88 -14.93 -0.12 -7.58 16 6 H 0.11 2.38 5.66 -52.49 -0.30 2.09 16 7 C 0.03 0.76 5.15 -17.47 -0.09 0.67 16 8 N -0.88 -21.35 8.96 55.50 0.50 -20.86 16 9 Si 0.93 18.40 29.57 -169.99 -5.03 13.37 16 10 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 11 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 12 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 13 C 0.47 10.58 6.86 -10.99 -0.08 10.50 16 14 O -0.60 -14.90 15.64 5.55 0.09 -14.82 16 15 C -0.08 -1.45 1.69 -91.56 -0.15 -1.60 16 16 H 0.10 1.97 6.76 -51.93 -0.35 1.62 16 17 C -0.09 -1.56 5.14 -27.94 -0.14 -1.70 16 18 C -0.12 -1.76 9.82 -35.67 -0.35 -2.11 16 19 C -0.17 -2.34 9.32 -35.90 -0.33 -2.67 16 20 C 0.12 1.69 3.57 -69.16 -0.25 1.44 16 21 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 22 N -0.84 -10.20 8.74 -5.91 -0.05 -10.26 16 23 C -0.09 -1.52 4.24 -26.52 -0.11 -1.63 16 24 H 0.14 3.22 5.82 -51.93 -0.30 2.92 16 25 H 0.08 1.68 7.57 -51.93 -0.39 1.28 16 26 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 27 H 0.10 1.90 6.23 -51.93 -0.32 1.58 16 28 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 29 H 0.10 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.09 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.34 3.37 9.02 -39.30 -0.35 3.01 16 32 H 0.34 3.73 8.96 -39.29 -0.35 3.37 16 33 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 34 H 0.07 1.15 7.95 -51.93 -0.41 0.74 16 LS Contribution 284.91 15.07 4.29 4.29 Total: -1.00 -28.04 284.91 -5.71 -33.75 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.03 Total: 10.70 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -1.95 Total: 6.37 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.92 Total: -53.67 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.09 Total: -14.82 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.04 -5.71 -33.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714175083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.888 kcal (2) G-P(sol) polarization free energy of solvation -28.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds