Wall clock time and date at job start Mon Mar 30 2020 04:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47424 * 308.83253 * 3 2 1 5 5 C 1.37097 * 120.00087 * 263.58667 * 4 3 2 6 6 H 1.08002 * 120.00036 * 194.34550 * 5 4 3 7 7 C 1.38948 * 119.99791 * 14.33556 * 5 4 3 8 8 N 1.31402 * 120.00318 * 12.16586 * 7 5 4 9 9 Si 1.86801 * 119.99912 * 192.15896 * 7 5 4 10 10 H 1.48498 * 109.47079 * 90.00091 * 9 7 5 11 11 H 1.48502 * 109.47560 * 210.00422 * 9 7 5 12 12 H 1.48502 * 109.47233 * 330.00740 * 9 7 5 13 13 C 1.34784 * 120.00100 * 83.57803 * 4 3 2 14 14 O 1.21291 * 119.99752 * 3.87047 * 13 4 3 15 15 C 1.50692 * 120.00106 * 183.86337 * 13 4 3 16 16 H 1.09004 * 109.64548 * 306.94872 * 15 13 4 17 17 C 1.53027 * 109.64273 * 67.36459 * 15 13 4 18 18 C 1.50553 * 109.89148 * 169.15924 * 17 15 13 19 19 C 1.29443 * 124.15473 * 343.00504 * 18 17 15 20 20 C 1.50067 * 124.08272 * 0.40836 * 19 18 17 21 21 H 1.08996 * 109.36156 * 222.66267 * 20 19 18 22 22 N 1.46903 * 109.24366 * 103.00531 * 20 19 18 23 23 C 1.53027 * 110.14350 * 342.87288 * 20 19 18 24 24 H 1.08995 * 109.47286 * 188.83219 * 3 2 1 25 25 H 1.09000 * 109.47177 * 68.83353 * 3 2 1 26 26 H 0.97004 * 120.00414 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.36055 * 289.54172 * 17 15 13 28 28 H 1.09003 * 109.35289 * 49.12886 * 17 15 13 29 29 H 1.07991 * 117.87885 * 162.97166 * 18 17 15 30 30 H 1.08003 * 117.95561 * 180.38679 * 19 18 17 31 31 H 1.00892 * 111.00136 * 59.38417 * 22 20 19 32 32 H 1.00900 * 110.99618 * 183.33726 * 22 20 19 33 33 H 1.09002 * 109.63852 * 289.74884 * 23 20 19 34 34 H 1.08995 * 109.81466 * 169.22321 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0967 -0.8652 1.0759 5 6 3.4500 -0.3235 2.2847 6 1 4.0206 -0.9072 2.9920 7 6 3.0742 0.9766 2.5999 8 7 2.1882 1.6025 1.8583 9 14 3.8285 1.8346 4.0778 10 1 5.0567 2.5559 3.6579 11 1 2.8529 2.8034 4.6391 12 1 4.1757 0.8265 5.1115 13 6 3.1989 -2.1944 0.8775 14 8 2.9534 -2.6654 -0.2130 15 6 3.6183 -3.0953 2.0103 16 1 4.5511 -2.7319 2.4414 17 6 2.5281 -3.1132 3.0840 18 6 2.8115 -4.2027 4.0836 19 6 3.6277 -5.1856 3.8756 20 6 4.4136 -5.3727 2.6109 21 1 4.3890 -6.4235 2.3224 22 7 5.8055 -4.9633 2.8408 23 6 3.8141 -4.5240 1.4875 24 1 2.9708 1.0162 0.1578 25 1 2.9714 -0.3702 -0.9583 26 1 1.9256 2.5100 2.0785 27 1 2.5042 -2.1485 3.5907 28 1 1.5616 -3.2965 2.6144 29 1 2.3015 -4.1605 5.0346 30 1 3.7510 -5.9163 4.6613 31 1 6.2257 -5.5084 3.5785 32 1 6.3461 -5.0271 1.9912 33 1 2.8520 -4.9397 1.1879 34 1 4.4902 -4.5120 0.6326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714175083.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:39 Heat of formation + Delta-G solvation = -1.867146 kcal Electronic energy + Delta-G solvation = -18583.737651 eV Core-core repulsion = 15709.406333 eV Total energy + Delta-G solvation = -2874.331318 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.13108 -39.02901 -37.39814 -36.36897 -34.25399 -33.38904 -32.19463 -29.58975 -28.71893 -26.69985 -24.15925 -23.17019 -21.00496 -19.60013 -18.73862 -18.22707 -17.73705 -16.75529 -16.27025 -16.20165 -15.93489 -15.58179 -15.32391 -14.84952 -14.40219 -14.20164 -13.85658 -13.62767 -13.42006 -13.18736 -13.14963 -13.03586 -12.89062 -12.41672 -12.11477 -12.06321 -11.76909 -11.63928 -11.24920 -11.11053 -10.26753 -10.04968 -9.91967 -9.40360 -8.26556 -5.90489 1.43415 1.47209 1.56150 1.65257 1.80202 2.04999 2.24776 2.38730 3.08963 3.12746 3.66008 3.78992 3.87154 3.97406 4.20594 4.36882 4.45593 4.48107 4.61558 4.70057 4.84547 4.94231 4.98696 5.09863 5.17498 5.33176 5.44087 5.53824 5.72833 5.79546 6.10746 6.35790 6.42154 6.77685 6.94631 7.12775 7.50541 7.90410 8.73629 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019801 B = 0.008963 C = 0.007141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.698032 B = 3123.339343 C = 3920.301715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C 0.268 3.732 3 C 0.220 3.780 4 N -0.451 5.451 5 C -0.332 4.332 6 H 0.119 0.881 7 C -0.003 4.003 8 N -0.906 5.906 9 Si 0.989 3.011 10 H -0.269 1.269 11 H -0.295 1.295 12 H -0.259 1.259 13 C 0.457 3.543 14 O -0.628 6.628 15 C -0.068 4.068 16 H 0.103 0.897 17 C -0.079 4.079 18 C -0.137 4.137 19 C -0.153 4.153 20 C 0.128 3.872 21 H 0.057 0.943 22 N -0.845 5.845 23 C -0.088 4.088 24 H 0.147 0.853 25 H 0.096 0.904 26 H 0.271 0.729 27 H 0.079 0.921 28 H 0.044 0.956 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.351 0.649 32 H 0.348 0.652 33 H 0.051 0.949 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.685 -8.902 5.523 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.202 5.202 2 C -0.049 4.049 3 C 0.094 3.906 4 N -0.170 5.170 5 C -0.459 4.459 6 H 0.136 0.864 7 C -0.204 4.204 8 N -0.546 5.546 9 Si 0.814 3.186 10 H -0.195 1.195 11 H -0.221 1.221 12 H -0.183 1.183 13 C 0.248 3.752 14 O -0.515 6.515 15 C -0.089 4.089 16 H 0.121 0.879 17 C -0.117 4.117 18 C -0.156 4.156 19 C -0.171 4.171 20 C 0.017 3.983 21 H 0.075 0.925 22 N -0.378 5.378 23 C -0.127 4.127 24 H 0.164 0.836 25 H 0.113 0.887 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.137 0.863 30 H 0.144 0.856 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.070 0.930 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.512 -8.228 5.186 11.705 hybrid contribution 0.400 -0.021 0.206 0.450 sum 6.912 -8.248 5.392 12.037 Atomic orbital electron populations 1.80837 1.14752 1.12554 1.12092 1.29923 0.95936 0.89444 0.89614 1.19011 0.79906 1.00040 0.91666 1.43877 1.55886 1.04613 1.12592 1.20088 1.33202 0.98348 0.94247 0.86390 1.25978 0.95446 0.97653 1.01294 1.69960 1.29727 1.14100 1.40802 0.84949 0.77596 0.78068 0.78008 1.19483 1.22137 1.18333 1.21128 0.81255 0.82725 0.90103 1.90513 1.57301 1.75607 1.28077 1.20892 1.00386 0.94263 0.93400 0.87925 1.20412 0.96593 0.99343 0.95319 1.22208 0.99572 0.94850 0.98981 1.22069 0.98037 0.98753 0.98284 1.20093 0.89139 0.96392 0.92637 0.92503 1.58614 1.01956 1.63833 1.13367 1.21410 1.00402 0.93561 0.97283 0.83576 0.88677 0.91838 0.90225 0.93752 0.86300 0.85620 0.83453 0.83830 0.93006 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -27.55 18.54 20.00 0.37 -27.18 16 2 C 0.27 13.41 14.02 89.44 1.25 14.67 16 3 C 0.22 10.01 5.09 84.57 0.43 10.44 16 4 N -0.45 -20.96 2.61 -645.43 -1.68 -22.64 16 5 C -0.33 -15.05 7.88 84.04 0.66 -14.39 16 6 H 0.12 5.06 5.66 -2.91 -0.02 5.04 16 7 C 0.00 -0.15 5.15 84.93 0.44 0.29 16 8 N -0.91 -44.09 8.96 21.66 0.19 -43.90 16 9 Si 0.99 36.99 29.57 68.60 2.03 39.02 16 10 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 11 H -0.29 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 13 C 0.46 20.82 6.86 87.65 0.60 21.42 16 14 O -0.63 -31.55 15.64 -3.06 -0.05 -31.59 16 15 C -0.07 -2.55 1.69 -11.40 -0.02 -2.57 16 16 H 0.10 3.83 6.76 -2.38 -0.02 3.82 16 17 C -0.08 -2.86 5.14 29.81 0.15 -2.71 16 18 C -0.14 -3.85 9.82 27.19 0.27 -3.58 16 19 C -0.15 -3.69 9.32 27.04 0.25 -3.44 16 20 C 0.13 3.10 3.57 43.98 0.16 3.25 16 21 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 22 N -0.84 -17.86 8.74 -172.60 -1.51 -19.37 16 23 C -0.09 -2.85 4.24 30.73 0.13 -2.72 16 24 H 0.15 6.61 5.82 -2.39 -0.01 6.59 16 25 H 0.10 4.00 7.57 -2.39 -0.02 3.98 16 26 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 27 H 0.08 3.11 6.23 -2.39 -0.01 3.10 16 28 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 29 H 0.12 2.88 8.06 -2.91 -0.02 2.85 16 30 H 0.13 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.35 5.67 9.02 -89.70 -0.81 4.86 16 32 H 0.35 6.64 8.96 -89.69 -0.80 5.84 16 33 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 34 H 0.06 2.06 7.95 -2.39 -0.02 2.04 16 Total: -1.00 -59.41 284.91 3.21 -56.20 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: -0.47 Total: 28.80 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 4.32 Total: 20.66 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -2.63 Total: -113.08 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.05 Total: -31.59 kcal Atomic # 14 Polarization: 36.99 SS G_CDS: 2.03 Total: 39.02 kcal Total: -59.41 3.21 -56.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714175083.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.329 kcal (2) G-P(sol) polarization free energy of solvation -59.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds