Wall clock time and date at job start Mon Mar 30 2020 04:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 120.00102 * 2 1 4 4 C 1.34781 * 120.00050 * 179.97438 * 2 1 3 5 5 O 1.21558 * 119.99649 * 4.83479 * 4 2 1 6 6 C 1.47841 * 120.00099 * 184.84020 * 4 2 1 7 7 C 1.39575 * 120.14273 * 320.79796 * 6 4 2 8 8 C 1.37963 * 119.85540 * 179.72295 * 7 6 4 9 9 C 1.38363 * 120.14059 * 0.28288 * 8 7 6 10 10 C 1.50699 * 119.85072 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47140 * 24.99399 * 10 9 8 12 12 O 1.42897 * 109.46932 * 145.00105 * 10 9 8 13 13 C 1.50702 * 109.46637 * 264.99794 * 10 9 8 14 14 H 1.07995 * 120.00673 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99832 * 180.02562 * 13 10 9 16 16 N 1.31516 * 120.00578 * 179.97438 * 15 13 10 17 17 Si 1.86802 * 119.99888 * 359.97438 * 15 13 10 18 18 H 1.48506 * 109.47055 * 90.00239 * 17 15 13 19 19 H 1.48500 * 109.47282 * 210.00309 * 17 15 13 20 20 H 1.48505 * 109.47292 * 330.00209 * 17 15 13 21 21 C 1.38357 * 120.29321 * 359.97438 * 9 8 7 22 22 C 1.37963 * 120.14615 * 0.02562 * 21 9 8 23 23 H 1.08998 * 109.47333 * 270.00358 * 1 2 3 24 24 H 1.09000 * 109.46883 * 30.00343 * 1 2 3 25 25 H 1.08997 * 109.46957 * 149.99669 * 1 2 3 26 26 H 1.09008 * 109.47032 * 265.65008 * 3 2 1 27 27 H 1.08996 * 109.47088 * 25.64257 * 3 2 1 28 28 H 1.08996 * 109.47556 * 145.64921 * 3 2 1 29 29 H 1.08000 * 120.07783 * 0.02562 * 7 6 4 30 30 H 1.07997 * 119.92787 * 180.30265 * 8 7 6 31 31 H 0.96700 * 114.00487 * 59.99736 * 12 10 9 32 32 H 0.96993 * 120.00240 * 179.97438 * 16 15 13 33 33 H 1.07999 * 119.92939 * 179.97438 * 21 9 8 34 34 H 1.08001 * 120.07435 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5343 -2.2181 -0.0877 6 6 3.6134 -1.1695 0.1086 7 6 4.3667 -0.2042 -0.5614 8 6 5.7420 -0.2083 -0.4518 9 6 6.3749 -1.1702 0.3154 10 6 7.8775 -1.1690 0.4301 11 1 8.2548 -0.1624 0.2501 12 8 8.2554 -1.5921 1.7416 13 6 8.4598 -2.1134 -0.5898 14 1 7.8072 -2.6596 -1.2547 15 6 9.8259 -2.2803 -0.6740 16 7 10.3341 -3.1049 -1.5636 17 14 10.9548 -1.3352 0.4757 18 1 11.1835 -2.1302 1.7090 19 1 12.2533 -1.0856 -0.2003 20 1 10.3252 -0.0384 0.8323 21 6 5.6344 -2.1331 0.9777 22 6 4.2585 -2.1402 0.8765 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8899 -0.5139 26 1 2.4467 1.5444 -1.0248 27 1 1.5769 2.0466 0.4447 28 1 3.1140 1.1592 0.5798 29 1 3.8739 0.5474 -1.1603 30 1 6.3257 0.5410 -0.9657 31 1 7.9525 -2.4815 1.9706 32 1 11.2951 -3.2220 -1.6230 33 1 6.1345 -2.8814 1.5746 34 1 3.6816 -2.8926 1.3936 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535701412.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:56 Heat of formation + Delta-G solvation = -48.033359 kcal Electronic energy + Delta-G solvation = -17779.159173 eV Core-core repulsion = 14870.533187 eV Total energy + Delta-G solvation = -2908.625986 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.24149 -38.43815 -35.89814 -35.61201 -32.39849 -31.32874 -30.71423 -28.24723 -27.41945 -26.12556 -23.42106 -22.26177 -20.83026 -19.61523 -17.61922 -17.15822 -16.43226 -15.88690 -15.76852 -15.03044 -14.62981 -14.35949 -13.95824 -13.41734 -13.13760 -12.99131 -12.82378 -12.78391 -12.58279 -12.36941 -12.26984 -11.97059 -11.57140 -11.07418 -10.81958 -10.64464 -10.04278 -9.82776 -9.40519 -8.89298 -8.81544 -8.75816 -8.56038 -8.10085 -6.22616 -4.36787 1.32679 1.76970 2.84981 3.00043 3.37452 3.41780 3.52779 4.16514 4.39985 4.55678 4.88977 5.03002 5.06941 5.12244 5.24177 5.29027 5.43489 5.52545 5.55086 5.62372 5.70318 5.82733 5.90478 6.17648 6.32086 6.35368 6.63852 6.71900 6.75204 7.23948 7.27648 7.33722 7.39233 8.15466 8.16944 8.67478 8.85893 9.37683 10.87150 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.045894 B = 0.004992 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.954380 B = 5607.743842 C = 5726.398299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.622 5.622 3 C 0.073 3.927 4 C 0.565 3.435 5 O -0.540 6.540 6 C -0.161 4.161 7 C -0.095 4.095 8 C -0.127 4.127 9 C -0.034 4.034 10 C 0.218 3.782 11 H 0.075 0.925 12 O -0.581 6.581 13 C -0.558 4.558 14 H 0.077 0.923 15 C 0.085 3.915 16 N -0.886 5.886 17 Si 0.913 3.087 18 H -0.277 1.277 19 H -0.303 1.303 20 H -0.267 1.267 21 C -0.121 4.121 22 C -0.063 4.063 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.363 0.637 32 H 0.268 0.732 33 H 0.127 0.873 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.605 9.407 4.322 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.356 5.356 3 C -0.070 4.070 4 C 0.356 3.644 5 O -0.418 6.418 6 C -0.164 4.164 7 C -0.113 4.113 8 C -0.145 4.145 9 C -0.035 4.035 10 C 0.161 3.839 11 H 0.093 0.907 12 O -0.389 6.389 13 C -0.595 4.595 14 H 0.095 0.905 15 C -0.121 4.121 16 N -0.522 5.522 17 Si 0.742 3.258 18 H -0.202 1.202 19 H -0.231 1.231 20 H -0.192 1.192 21 C -0.139 4.139 22 C -0.082 4.082 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.211 0.789 32 H 0.077 0.923 33 H 0.145 0.855 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.531 9.374 4.205 17.797 hybrid contribution 0.363 -0.096 0.277 0.466 sum -14.169 9.278 4.483 17.519 Atomic orbital electron populations 1.21625 0.79222 1.03123 1.01714 1.47638 1.06925 1.06496 1.74581 1.22168 0.98075 0.84818 1.01917 1.18566 0.87580 0.82984 0.75313 1.90746 1.70163 1.31197 1.49707 1.19559 0.91675 1.00078 1.05048 1.21449 0.94234 0.97219 0.98396 1.20954 0.93600 0.99877 1.00050 1.21219 0.98790 0.91813 0.91667 1.19126 0.85236 0.97474 0.82039 0.90731 1.86434 1.80214 1.36602 1.35606 1.21372 0.92891 1.26283 1.19000 0.90489 1.25023 0.98295 0.94207 0.94547 1.69942 1.12933 1.35417 1.33947 0.86260 0.78197 0.81141 0.80181 1.20243 1.23117 1.19228 1.20868 0.92864 0.99154 1.01055 1.21035 0.94423 0.95990 0.96766 0.92833 0.91322 0.90439 0.92221 0.91211 0.89787 0.85530 0.85525 0.78934 0.92266 0.85540 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 10.45 59.85 0.63 1.43 16 2 N -0.62 -7.44 3.27 -190.65 -0.62 -8.06 16 3 C 0.07 0.64 8.88 59.85 0.53 1.17 16 4 C 0.57 8.94 7.36 -12.33 -0.09 8.85 16 5 O -0.54 -10.26 16.46 5.31 0.09 -10.17 16 6 C -0.16 -2.59 5.24 -104.97 -0.55 -3.14 16 7 C -0.09 -1.40 7.57 -39.18 -0.30 -1.70 16 8 C -0.13 -2.16 9.66 -39.64 -0.38 -2.54 16 9 C -0.03 -0.67 4.95 -104.53 -0.52 -1.18 16 10 C 0.22 4.92 2.54 -29.03 -0.07 4.85 16 11 H 0.08 1.70 7.11 -51.93 -0.37 1.34 16 12 O -0.58 -12.65 10.83 -35.23 -0.38 -13.03 16 13 C -0.56 -15.03 9.33 -34.44 -0.32 -15.35 16 14 H 0.08 2.29 7.98 -52.49 -0.42 1.87 16 15 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 16 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 17 Si 0.91 22.29 26.18 -169.99 -4.45 17.84 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 19 H -0.30 -7.37 7.11 56.52 0.40 -6.96 16 20 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 21 C -0.12 -2.17 9.31 -39.64 -0.37 -2.54 16 22 C -0.06 -1.06 9.63 -39.18 -0.38 -1.44 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 25 H 0.08 0.84 7.36 -51.93 -0.38 0.46 16 26 H 0.06 0.46 6.90 -51.92 -0.36 0.10 16 27 H 0.07 0.44 8.04 -51.93 -0.42 0.02 16 28 H 0.08 0.81 5.81 -51.93 -0.30 0.51 16 29 H 0.13 1.49 5.31 -52.49 -0.28 1.21 16 30 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 31 H 0.36 6.89 7.37 45.56 0.34 7.23 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.13 2.09 6.60 -52.49 -0.35 1.74 16 34 H 0.12 1.93 8.05 -52.49 -0.42 1.51 16 LS Contribution 284.93 15.07 4.29 4.29 Total: -1.00 -33.02 284.93 -5.61 -38.63 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -3.39 Total: 5.36 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -1.92 Total: -9.33 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.15 Total: -33.59 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.29 Total: -23.20 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.45 Total: 17.84 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.02 -5.61 -38.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535701412.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.406 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds