Wall clock time and date at job start Mon Mar 30 2020 03:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46759 * 111.00081 * 2 1 4 4 C 1.53412 * 108.60676 * 285.42420 * 3 2 1 5 5 O 1.43134 * 107.90242 * 296.75118 * 4 3 2 6 6 C 1.36154 * 116.66464 * 45.37961 * 5 4 3 7 7 C 1.38779 * 118.74835 * 165.10787 * 6 5 4 8 8 C 1.38176 * 120.20361 * 179.68804 * 7 6 5 9 9 C 1.38258 * 120.02884 * 359.76664 * 8 7 6 10 10 C 1.50698 * 119.94451 * 180.34523 * 9 8 7 11 11 H 1.09004 * 109.47190 * 160.25613 * 10 9 8 12 12 O 1.42906 * 109.46986 * 40.25856 * 10 9 8 13 13 C 1.50697 * 109.47424 * 280.26161 * 10 9 8 14 14 H 1.07999 * 119.99744 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00152 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00136 * 359.97438 * 15 13 10 17 17 Si 1.86807 * 120.00034 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46729 * 89.99851 * 17 15 13 19 19 H 1.48488 * 109.47222 * 210.00103 * 17 15 13 20 20 H 1.48503 * 109.46898 * 329.99992 * 17 15 13 21 21 C 1.38064 * 120.11629 * 0.60891 * 9 8 7 22 22 C 1.38968 * 121.37763 * 344.96000 * 6 5 4 23 23 H 1.08999 * 109.47518 * 185.42573 * 1 2 3 24 24 H 1.09008 * 109.47206 * 305.41978 * 1 2 3 25 25 H 1.09004 * 109.47637 * 65.41883 * 1 2 3 26 26 H 1.08999 * 109.61272 * 45.16599 * 3 2 1 27 27 H 1.09004 * 109.61094 * 165.69085 * 3 2 1 28 28 H 1.09001 * 109.77779 * 56.35279 * 4 3 2 29 29 H 1.09008 * 109.77781 * 177.14813 * 4 3 2 30 30 H 1.07994 * 119.89982 * 359.71105 * 7 6 5 31 31 H 1.07998 * 119.98846 * 180.02562 * 8 7 6 32 32 H 0.96695 * 114.00099 * 299.99806 * 12 10 9 33 33 H 0.97000 * 120.00014 * 180.02562 * 16 15 13 34 34 H 1.08002 * 119.88408 * 179.70327 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9949 1.3701 0.0000 4 6 1.8093 1.9657 -1.4016 5 8 2.5938 1.1925 -2.3156 6 6 2.5140 -0.1614 -2.1957 7 6 2.9918 -0.9525 -3.2310 8 6 2.9316 -2.3298 -3.1382 9 6 2.3985 -2.9246 -2.0096 10 6 2.3409 -4.4269 -1.9070 11 1 2.2322 -4.7159 -0.8616 12 8 3.5458 -4.9869 -2.4332 13 6 1.1630 -4.9395 -2.6949 14 1 0.5201 -4.2465 -3.2174 15 6 0.9060 -6.2930 -2.7489 16 7 1.6891 -7.1369 -2.1132 17 14 -0.5546 -6.9283 -3.7250 18 1 -0.1338 -7.2045 -5.1220 19 1 -1.0591 -8.1789 -3.1035 20 1 -1.6319 -5.9061 -3.7254 21 6 1.9140 -2.1444 -0.9787 22 6 1.9701 -0.7568 -1.0639 23 1 -0.3634 -1.0230 0.0972 24 1 -0.3634 0.5956 0.8375 25 1 -0.3634 0.4275 -0.9345 26 1 1.4502 1.9711 0.7281 27 1 3.0549 1.3551 0.2538 28 1 0.7582 1.9183 -1.6862 29 1 2.1479 3.0018 -1.4099 30 1 3.4124 -0.4902 -4.1117 31 1 3.3049 -2.9421 -3.9457 32 1 3.7075 -4.7703 -3.3616 33 1 1.5085 -8.0892 -2.1514 34 1 1.4940 -2.6130 -0.1009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535755294.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:51 Heat of formation + Delta-G solvation = -50.484987 kcal Electronic energy + Delta-G solvation = -18276.974837 eV Core-core repulsion = 15368.242540 eV Total energy + Delta-G solvation = -2908.732297 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.83129 -37.69139 -36.31877 -35.02606 -32.17019 -30.60127 -30.19034 -28.55573 -26.64870 -25.12669 -24.02783 -22.42447 -21.52376 -19.24903 -17.75863 -16.95553 -16.53659 -16.31789 -15.08233 -14.79260 -14.61528 -14.47826 -14.24440 -13.76670 -13.40659 -13.21110 -12.67045 -12.25489 -12.13937 -11.98677 -11.87542 -11.43319 -11.20371 -10.99503 -10.92773 -10.68941 -10.53588 -10.09731 -9.26791 -9.03141 -8.65166 -8.32587 -7.83842 -7.41221 -6.03321 -4.22660 1.81206 1.98638 3.26522 3.33675 3.36812 3.44850 3.78158 4.25477 4.41884 4.57639 4.88397 4.91946 5.13978 5.23017 5.26345 5.37999 5.44520 5.65854 5.74123 5.82252 5.88187 6.01888 6.03991 6.28309 6.43376 6.59353 6.79374 6.94092 7.10529 7.24527 7.30690 7.74641 7.81351 7.84504 8.11545 8.80093 9.32131 9.53497 10.99791 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.031835 B = 0.006058 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.314037 B = 4621.041428 C = 4880.120280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.490 5.490 3 C 0.017 3.983 4 C 0.022 3.978 5 O -0.316 6.316 6 C 0.060 3.940 7 C -0.134 4.134 8 C -0.091 4.091 9 C -0.082 4.082 10 C 0.262 3.738 11 H 0.067 0.933 12 O -0.560 6.560 13 C -0.563 4.563 14 H 0.058 0.942 15 C 0.080 3.920 16 N -0.859 5.859 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.084 4.084 22 C 0.021 3.979 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.030 0.970 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.345 0.655 33 H 0.262 0.738 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.042 15.587 1.890 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.207 5.207 3 C -0.111 4.111 4 C -0.055 4.055 5 O -0.230 6.230 6 C 0.014 3.986 7 C -0.153 4.153 8 C -0.110 4.110 9 C -0.083 4.083 10 C 0.204 3.796 11 H 0.085 0.915 12 O -0.363 6.363 13 C -0.601 4.601 14 H 0.076 0.924 15 C -0.127 4.127 16 N -0.494 5.494 17 Si 0.718 3.282 18 H -0.204 1.204 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.103 4.103 22 C -0.075 4.075 23 H 0.099 0.901 24 H 0.090 0.910 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.125 0.875 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.190 0.810 33 H 0.072 0.928 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.727 15.064 2.910 15.359 hybrid contribution -1.368 0.310 -1.544 2.086 sum -2.095 15.373 1.366 15.576 Atomic orbital electron populations 1.22572 0.85579 1.03649 1.00349 1.59209 1.08306 1.11985 1.41211 1.22923 1.02666 0.88943 0.96543 1.23442 0.95676 0.95758 0.90643 1.86249 1.65180 1.15116 1.56498 1.18845 1.03729 0.82168 0.93906 1.20339 1.04525 0.93071 0.97376 1.20748 0.99276 0.92755 0.98177 1.21251 0.94545 1.00056 0.92438 1.18462 0.83934 0.80965 0.96223 0.91543 1.86618 1.43909 1.77525 1.28208 1.21550 1.12701 0.92227 1.33632 0.92420 1.25050 0.95857 0.96955 0.94812 1.70072 1.36503 1.02538 1.40299 0.86632 0.82866 0.78402 0.80277 1.20444 1.21063 1.19827 1.20668 1.00242 0.90227 0.99207 1.18615 1.05957 0.93552 0.89339 0.90150 0.91011 0.95185 0.88867 0.89082 0.92109 0.87527 0.85988 0.85549 0.81002 0.92842 0.85664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.20 60.06 0.55 0.86 16 2 N -0.49 -7.26 4.86 -178.67 -0.87 -8.13 16 3 C 0.02 0.20 6.02 -3.69 -0.02 0.18 16 4 C 0.02 0.26 7.06 37.37 0.26 0.52 16 5 O -0.32 -5.01 10.40 -20.23 -0.21 -5.22 16 6 C 0.06 1.06 6.47 -39.11 -0.25 0.81 16 7 C -0.13 -2.38 9.94 -39.40 -0.39 -2.77 16 8 C -0.09 -1.76 9.31 -39.60 -0.37 -2.13 16 9 C -0.08 -1.76 4.91 -104.68 -0.51 -2.28 16 10 C 0.26 6.63 3.06 -29.04 -0.09 6.54 16 11 H 0.07 1.83 8.00 -51.93 -0.42 1.42 16 12 O -0.56 -14.36 12.58 -35.23 -0.44 -14.80 16 13 C -0.56 -15.25 8.74 -34.44 -0.30 -15.55 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 16 N -0.86 -25.01 12.84 55.43 0.71 -24.30 16 17 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 C -0.08 -1.67 9.09 -39.31 -0.36 -2.03 16 22 C 0.02 0.37 5.12 -83.59 -0.43 -0.05 16 23 H 0.08 1.09 7.86 -51.93 -0.41 0.68 16 24 H 0.07 0.70 7.98 -51.92 -0.41 0.29 16 25 H 0.03 0.37 6.90 -51.93 -0.36 0.02 16 26 H 0.09 0.80 7.90 -51.93 -0.41 0.39 16 27 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.69 6.81 -51.93 -0.35 0.34 16 29 H 0.11 0.91 8.14 -51.92 -0.42 0.48 16 30 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 31 H 0.13 2.26 6.79 -52.49 -0.36 1.91 16 32 H 0.35 7.73 7.50 45.56 0.34 8.08 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.13 2.46 8.03 -52.49 -0.42 2.04 16 LS Contribution 284.00 15.07 4.28 4.28 Total: -1.00 -31.36 284.00 -7.16 -38.52 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -3.61 Total: 7.51 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -2.00 Total: -13.80 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: -0.16 Total: -32.43 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.65 Total: -20.02 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.36 -7.16 -38.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535755294.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.964 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds