Wall clock time and date at job start Mon Mar 30 2020 03:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46759 * 111.00081 * 2 1 4 4 C 1.53412 * 108.60676 * 285.42420 * 3 2 1 5 5 O 1.43134 * 107.90242 * 296.75118 * 4 3 2 6 6 C 1.36154 * 116.66464 * 45.37961 * 5 4 3 7 7 C 1.38779 * 118.74835 * 165.10787 * 6 5 4 8 8 C 1.38176 * 120.20361 * 179.68804 * 7 6 5 9 9 C 1.38258 * 120.02884 * 359.76664 * 8 7 6 10 10 C 1.50698 * 119.94451 * 180.34523 * 9 8 7 11 11 H 1.09004 * 109.47190 * 160.25613 * 10 9 8 12 12 O 1.42906 * 109.46986 * 40.25856 * 10 9 8 13 13 C 1.50697 * 109.47424 * 280.26161 * 10 9 8 14 14 H 1.07999 * 119.99744 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00152 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00136 * 359.97438 * 15 13 10 17 17 Si 1.86807 * 120.00034 * 179.97438 * 15 13 10 18 18 H 1.48498 * 109.46729 * 89.99851 * 17 15 13 19 19 H 1.48488 * 109.47222 * 210.00103 * 17 15 13 20 20 H 1.48503 * 109.46898 * 329.99992 * 17 15 13 21 21 C 1.38064 * 120.11629 * 0.60891 * 9 8 7 22 22 C 1.38968 * 121.37763 * 344.96000 * 6 5 4 23 23 H 1.08999 * 109.47518 * 185.42573 * 1 2 3 24 24 H 1.09008 * 109.47206 * 305.41978 * 1 2 3 25 25 H 1.09004 * 109.47637 * 65.41883 * 1 2 3 26 26 H 1.08999 * 109.61272 * 45.16599 * 3 2 1 27 27 H 1.09004 * 109.61094 * 165.69085 * 3 2 1 28 28 H 1.09001 * 109.77779 * 56.35279 * 4 3 2 29 29 H 1.09008 * 109.77781 * 177.14813 * 4 3 2 30 30 H 1.07994 * 119.89982 * 359.71105 * 7 6 5 31 31 H 1.07998 * 119.98846 * 180.02562 * 8 7 6 32 32 H 0.96695 * 114.00099 * 299.99806 * 12 10 9 33 33 H 0.97000 * 120.00014 * 180.02562 * 16 15 13 34 34 H 1.08002 * 119.88408 * 179.70327 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9949 1.3701 0.0000 4 6 1.8093 1.9657 -1.4016 5 8 2.5938 1.1925 -2.3156 6 6 2.5140 -0.1614 -2.1957 7 6 2.9918 -0.9525 -3.2310 8 6 2.9316 -2.3298 -3.1382 9 6 2.3985 -2.9246 -2.0096 10 6 2.3409 -4.4269 -1.9070 11 1 2.2322 -4.7159 -0.8616 12 8 3.5458 -4.9869 -2.4332 13 6 1.1630 -4.9395 -2.6949 14 1 0.5201 -4.2465 -3.2174 15 6 0.9060 -6.2930 -2.7489 16 7 1.6891 -7.1369 -2.1132 17 14 -0.5546 -6.9283 -3.7250 18 1 -0.1338 -7.2045 -5.1220 19 1 -1.0591 -8.1789 -3.1035 20 1 -1.6319 -5.9061 -3.7254 21 6 1.9140 -2.1444 -0.9787 22 6 1.9701 -0.7568 -1.0639 23 1 -0.3634 -1.0230 0.0972 24 1 -0.3634 0.5956 0.8375 25 1 -0.3634 0.4275 -0.9345 26 1 1.4502 1.9711 0.7281 27 1 3.0549 1.3551 0.2538 28 1 0.7582 1.9183 -1.6862 29 1 2.1479 3.0018 -1.4099 30 1 3.4124 -0.4902 -4.1117 31 1 3.3049 -2.9421 -3.9457 32 1 3.7075 -4.7703 -3.3616 33 1 1.5085 -8.0892 -2.1514 34 1 1.4940 -2.6130 -0.1009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535755294.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:51 Heat of formation + Delta-G solvation = -73.609169 kcal Electronic energy + Delta-G solvation = -18277.977576 eV Core-core repulsion = 15368.242540 eV Total energy + Delta-G solvation = -2909.735037 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.06474 -39.23840 -37.50638 -36.79947 -34.28796 -32.04254 -31.54063 -29.75850 -28.44703 -26.35322 -25.48123 -23.97151 -23.02156 -20.57205 -19.18867 -18.88395 -17.78677 -17.64229 -16.68452 -16.55736 -16.07693 -15.63390 -15.45344 -15.22362 -15.03612 -14.64633 -14.10158 -13.92754 -13.47170 -13.37683 -13.04643 -13.01506 -12.83626 -12.80464 -12.40585 -12.14200 -11.96874 -11.78720 -11.15938 -10.74630 -10.38163 -10.25770 -9.22220 -8.82961 -8.12401 -6.40518 0.37674 0.49837 1.41064 1.41291 1.52521 2.31372 2.38382 2.65928 2.84864 3.11818 3.58320 3.90381 3.99851 4.02359 4.16405 4.34260 4.38613 4.40728 4.46278 4.49479 4.53228 4.67182 4.80725 4.90230 4.98016 5.24165 5.29009 5.38328 5.63917 5.65866 5.92087 5.96533 6.02201 6.09999 6.50095 6.69497 7.30750 7.49790 8.89998 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.031835 B = 0.006058 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.314037 B = 4621.041428 C = 4880.120280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.505 5.505 3 C 0.016 3.984 4 C 0.016 3.984 5 O -0.324 6.324 6 C 0.062 3.938 7 C -0.132 4.132 8 C -0.098 4.098 9 C -0.106 4.106 10 C 0.266 3.734 11 H 0.029 0.971 12 O -0.576 6.576 13 C -0.571 4.571 14 H 0.055 0.945 15 C 0.028 3.972 16 N -0.899 5.899 17 Si 0.961 3.039 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.268 1.268 21 C -0.099 4.099 22 C 0.027 3.973 23 H 0.061 0.939 24 H 0.106 0.894 25 H 0.032 0.968 26 H 0.131 0.869 27 H 0.085 0.915 28 H 0.067 0.933 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.135 0.865 32 H 0.358 0.642 33 H 0.263 0.737 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 18.196 1.350 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.222 5.222 3 C -0.111 4.111 4 C -0.060 4.060 5 O -0.238 6.238 6 C 0.015 3.985 7 C -0.151 4.151 8 C -0.117 4.117 9 C -0.107 4.107 10 C 0.208 3.792 11 H 0.047 0.953 12 O -0.381 6.381 13 C -0.609 4.609 14 H 0.073 0.927 15 C -0.175 4.175 16 N -0.536 5.536 17 Si 0.785 3.215 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.192 1.192 21 C -0.119 4.119 22 C -0.070 4.070 23 H 0.080 0.920 24 H 0.124 0.876 25 H 0.051 0.949 26 H 0.149 0.851 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.162 0.838 30 H 0.166 0.834 31 H 0.152 0.848 32 H 0.204 0.796 33 H 0.072 0.928 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.650 17.707 2.371 17.941 hybrid contribution -1.060 -0.333 -1.290 1.703 sum -2.709 17.374 1.080 17.617 Atomic orbital electron populations 1.22615 0.84130 1.03307 1.01929 1.59165 1.09547 1.13781 1.39747 1.23099 1.02840 0.87454 0.97720 1.23832 0.95815 0.96832 0.89541 1.86242 1.65916 1.13895 1.57791 1.18970 1.02675 0.83439 0.93466 1.20580 1.03809 0.92342 0.98358 1.20806 0.99380 0.93836 0.97628 1.20871 0.97497 0.97842 0.94500 1.18153 0.83408 0.83710 0.93898 0.95350 1.86539 1.44020 1.78181 1.29336 1.21813 1.13103 0.92507 1.33487 0.92660 1.25898 0.98612 0.97180 0.95781 1.70206 1.38562 1.02826 1.41986 0.85539 0.79315 0.77731 0.78895 1.19542 1.20674 1.19232 1.20630 1.01011 0.91585 0.98685 1.18653 1.05200 0.92914 0.90200 0.92009 0.87560 0.94948 0.85064 0.89692 0.91470 0.83760 0.83434 0.84764 0.79575 0.92767 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.20 127.69 1.17 1.76 16 2 N -0.50 -14.01 4.86 -719.17 -3.49 -17.50 16 3 C 0.02 0.31 6.02 86.47 0.52 0.83 16 4 C 0.02 0.31 7.06 72.12 0.51 0.82 16 5 O -0.32 -9.28 10.40 -95.31 -0.99 -10.27 16 6 C 0.06 2.09 6.47 22.57 0.15 2.23 16 7 C -0.13 -4.50 9.94 22.38 0.22 -4.28 16 8 C -0.10 -3.80 9.31 22.26 0.21 -3.59 16 9 C -0.11 -4.73 4.91 -19.90 -0.10 -4.82 16 10 C 0.27 14.12 3.06 29.10 0.09 14.21 16 11 H 0.03 1.70 8.00 -2.38 -0.02 1.68 16 12 O -0.58 -30.74 12.58 -148.98 -1.87 -32.61 16 13 C -0.57 -31.80 8.74 25.60 0.22 -31.58 16 14 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 15 C 0.03 1.56 5.40 84.66 0.46 2.02 16 16 N -0.90 -53.84 12.84 21.45 0.28 -53.56 16 17 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 C -0.10 -4.08 9.09 22.45 0.20 -3.88 16 22 C 0.03 0.93 5.12 38.25 0.20 1.12 16 23 H 0.06 1.64 7.86 -2.39 -0.02 1.63 16 24 H 0.11 1.69 7.98 -2.38 -0.02 1.68 16 25 H 0.03 0.73 6.90 -2.39 -0.02 0.71 16 26 H 0.13 1.60 7.90 -2.39 -0.02 1.58 16 27 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.07 1.25 6.81 -2.39 -0.02 1.23 16 29 H 0.14 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 31 H 0.13 4.82 6.79 -2.91 -0.02 4.80 16 32 H 0.36 16.56 7.50 -74.06 -0.56 16.00 16 33 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.11 4.79 8.03 -2.91 -0.02 4.77 16 Total: -1.00 -69.03 284.00 0.35 -68.68 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.56 Total: 24.93 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 3.85 Total: -25.15 kcal Atomic # 7 Polarization: -67.85 SS G_CDS: -3.22 Total: -71.06 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -2.87 Total: -42.88 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -69.03 0.35 -68.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535755294.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.929 kcal (2) G-P(sol) polarization free energy of solvation -69.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds