Wall clock time and date at job start Mon Mar 30 2020 03:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86809 * 119.99836 * 2 1 4 4 H 1.48495 * 109.46828 * 269.99981 * 3 2 1 5 5 H 1.48493 * 109.46733 * 30.00265 * 3 2 1 6 6 H 1.48495 * 109.46860 * 150.00336 * 3 2 1 7 7 C 1.38950 * 120.00425 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00155 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99382 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99662 * 179.97438 * 9 7 2 11 11 O 1.21299 * 120.00040 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99956 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47227 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00132 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46940 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46890 * 179.97438 * 15 14 13 17 17 C 1.38654 * 120.78409 * 90.00032 * 16 15 14 18 18 C 1.38209 * 119.15786 * 180.02562 * 17 16 15 19 19 N 1.31870 * 120.76375 * 0.26353 * 18 17 16 20 20 C 1.31872 * 121.72489 * 359.46946 * 19 18 17 21 21 C 1.38200 * 120.76402 * 0.52682 * 20 19 18 22 22 H 0.97000 * 120.00241 * 0.02562 * 1 2 3 23 23 H 0.96996 * 120.00538 * 0.02562 * 9 7 2 24 24 H 1.08995 * 109.46914 * 60.00787 * 12 10 9 25 25 H 1.08996 * 109.47554 * 300.00313 * 12 10 9 26 26 H 1.00903 * 110.99509 * 56.04815 * 13 12 10 27 27 H 1.08996 * 109.47005 * 60.00343 * 14 13 12 28 28 H 1.09002 * 109.46740 * 300.00010 * 14 13 12 29 29 H 1.08996 * 109.46980 * 60.00341 * 15 14 13 30 30 H 1.08997 * 109.47418 * 300.00082 * 15 14 13 31 31 H 1.07995 * 120.42251 * 0.04566 * 17 16 15 32 32 H 1.08002 * 119.61346 * 179.97438 * 18 17 16 33 33 H 1.08004 * 119.61160 * 180.27376 * 20 19 18 34 34 H 1.08003 * 120.41583 * 179.72635 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 7 2.1985 -5.9795 -0.0027 14 6 1.4982 -7.2708 -0.0039 15 6 2.5232 -8.4068 -0.0050 16 6 1.8048 -9.7315 -0.0056 17 6 1.4660 -10.3546 -1.1970 18 6 0.8070 -11.5688 -1.1583 19 7 0.4963 -12.1313 -0.0068 20 6 0.8072 -11.5700 1.1453 21 6 1.4663 -10.3559 1.1851 22 1 -0.4850 0.8400 -0.0004 23 1 0.3534 -2.3906 -0.0005 24 1 0.6170 -4.9201 -0.8920 25 1 0.6175 -4.9213 0.8879 26 1 2.8333 -5.9127 0.7788 27 1 0.8737 -7.3446 -0.8941 28 1 0.8730 -7.3459 0.8859 29 1 3.1481 -8.3331 0.8850 30 1 3.1481 -8.3315 -0.8949 31 1 1.7143 -9.8971 -2.1433 32 1 0.5393 -12.0604 -2.0820 33 1 0.5400 -12.0629 2.0684 34 1 1.7143 -9.8992 2.1319 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037871679.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:40 Heat of formation + Delta-G solvation = -32.615953 kcal Electronic energy + Delta-G solvation = -16671.182672 eV Core-core repulsion = 13795.517985 eV Total energy + Delta-G solvation = -2875.664686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06853 -40.15732 -37.41538 -35.95113 -34.58199 -33.26745 -32.08071 -30.60399 -27.91730 -25.94390 -24.34914 -23.88510 -22.27665 -21.08173 -19.92028 -17.86461 -17.54095 -17.44726 -16.91420 -16.48197 -16.45111 -15.93526 -15.40756 -15.17171 -15.00811 -14.67117 -14.45968 -13.86205 -13.55738 -13.46522 -13.08851 -12.95837 -12.73229 -12.62672 -12.42324 -12.12032 -11.91069 -11.51406 -10.52857 -10.42010 -10.31425 -10.05174 -10.02748 -9.37052 -8.47456 -5.96463 0.24145 0.30469 1.38058 1.41994 1.54774 2.03806 2.28736 2.80721 2.97250 3.19836 3.47078 3.63481 3.83528 3.92226 4.15629 4.23358 4.26321 4.28883 4.33920 4.48750 4.55744 4.62808 4.77034 4.86233 4.98099 5.06557 5.15134 5.40328 5.48862 5.82414 5.85965 6.07326 6.38232 6.58923 7.06101 7.11538 7.54949 8.09980 8.69980 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.067590 B = 0.003019 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.165999 B = 9273.383488 C = 9381.574322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.013 4.013 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.065 3.935 13 N -0.683 5.683 14 C 0.071 3.929 15 C -0.074 4.074 16 C -0.041 4.041 17 C -0.173 4.173 18 C 0.088 3.912 19 N -0.519 5.519 20 C 0.087 3.913 21 C -0.174 4.174 22 H 0.278 0.722 23 H 0.397 0.603 24 H 0.103 0.897 25 H 0.067 0.933 26 H 0.346 0.654 27 H 0.075 0.925 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.150 0.850 32 H 0.174 0.826 33 H 0.174 0.826 34 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 -18.950 0.988 19.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.213 4.213 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.316 5.316 14 C -0.058 4.058 15 C -0.112 4.112 16 C -0.050 4.050 17 C -0.193 4.193 18 C -0.068 4.068 19 N -0.229 5.229 20 C -0.069 4.069 21 C -0.193 4.193 22 H 0.087 0.913 23 H 0.230 0.770 24 H 0.121 0.879 25 H 0.085 0.915 26 H 0.165 0.835 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.168 0.832 32 H 0.191 0.809 33 H 0.192 0.808 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.130 -19.580 0.310 19.615 hybrid contribution -0.056 1.706 0.848 1.906 sum -1.186 -17.874 1.158 17.951 Atomic orbital electron populations 1.69669 1.06862 1.29352 1.50279 1.26054 0.96547 1.02458 0.96213 0.84922 0.77906 0.76812 0.78674 1.19644 1.19509 1.19691 1.19678 0.92736 0.84025 1.49994 0.90267 1.41941 1.09359 1.04741 1.64989 1.20869 0.88259 0.86159 0.82242 1.90490 1.15825 1.87967 1.56687 1.21527 0.94029 0.88101 1.03109 1.60051 1.19179 1.00835 1.51519 1.21918 0.95483 0.87058 1.01302 1.20517 0.97085 0.88962 1.04589 1.20398 0.95197 0.95763 0.93619 1.22331 1.00373 0.96974 0.99575 1.23144 0.94143 0.92843 0.96719 1.67695 1.19869 1.35871 0.99465 1.23145 0.94162 0.92883 0.96703 1.22317 1.00487 0.97018 0.99498 0.91259 0.76953 0.87870 0.91537 0.83487 0.90634 0.94353 0.89817 0.89700 0.83247 0.80859 0.80845 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.61 13.05 21.66 0.28 -49.32 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 3 Si 0.99 42.76 29.55 68.60 2.03 44.78 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 8 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 9 N -0.57 -29.38 5.29 -306.98 -1.62 -31.01 16 10 C 0.44 20.71 7.82 87.66 0.69 21.40 16 11 O -0.62 -34.42 15.78 -3.09 -0.05 -34.47 16 12 C 0.06 2.18 6.17 85.56 0.53 2.71 16 13 N -0.68 -20.69 6.12 -517.94 -3.17 -23.87 16 14 C 0.07 1.56 5.67 86.30 0.49 2.05 16 15 C -0.07 -1.36 5.65 29.85 0.17 -1.19 16 16 C -0.04 -0.73 5.17 -19.67 -0.10 -0.83 16 17 C -0.17 -2.91 9.82 22.36 0.22 -2.69 16 18 C 0.09 1.54 11.18 84.68 0.95 2.48 16 19 N -0.52 -10.73 10.36 -195.84 -2.03 -12.76 16 20 C 0.09 1.51 11.18 84.68 0.95 2.45 16 21 C -0.17 -2.84 9.82 22.36 0.22 -2.62 16 22 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 23 H 0.40 19.27 7.90 -92.71 -0.73 18.53 16 24 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.35 10.85 8.43 -89.69 -0.76 10.09 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 1.44 8.10 -2.39 -0.02 1.42 16 30 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 31 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 33 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -68.63 301.94 0.45 -68.18 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.37 Total: 33.13 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 5.38 Total: 5.33 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -6.54 Total: -116.96 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.05 Total: -34.47 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -68.63 0.45 -68.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037871679.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.567 kcal (2) G-P(sol) polarization free energy of solvation -68.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds