Wall clock time and date at job start Mon Mar 30 2020 03:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99884 * 2 1 4 4 H 1.48500 * 109.46778 * 269.99352 * 3 2 1 5 5 H 1.48500 * 109.47173 * 29.99588 * 3 2 1 6 6 H 1.48499 * 109.47025 * 149.99571 * 3 2 1 7 7 C 1.37881 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99824 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99758 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.46683 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00394 * 271.41126 * 10 9 7 12 12 O 1.21701 * 120.00113 * 185.60332 * 11 10 9 13 13 C 1.46640 * 119.99869 * 5.61375 * 11 10 9 14 14 C 1.37954 * 126.17053 * 187.82614 * 13 11 10 15 15 C 1.40185 * 107.12987 * 179.97438 * 14 13 11 16 16 N 1.40737 * 126.11313 * 180.02562 * 15 14 13 17 17 C 1.35870 * 107.76557 * 359.97438 * 15 14 13 18 18 N 1.35998 * 108.76308 * 359.73107 * 17 15 14 19 19 H 0.96995 * 125.65930 * 180.30323 * 18 17 15 20 20 C 1.46507 * 119.99546 * 91.41813 * 10 9 7 21 21 C 1.53004 * 117.49339 * 196.83432 * 20 10 9 22 22 C 1.52999 * 117.49797 * 128.17501 * 20 10 9 23 23 H 0.96997 * 119.99962 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46667 * 60.00703 * 9 7 2 25 25 H 1.08999 * 109.47179 * 300.00777 * 9 7 2 26 26 H 1.08001 * 126.43620 * 359.97438 * 14 13 11 27 27 H 0.96999 * 120.00123 * 359.97438 * 16 15 14 28 28 H 0.96994 * 119.99204 * 179.97438 * 16 15 14 29 29 H 1.08004 * 125.61807 * 179.97438 * 17 15 14 30 30 H 1.08992 * 115.55520 * 342.50070 * 20 10 9 31 31 H 1.08996 * 117.50444 * 359.97438 * 21 20 10 32 32 H 1.09002 * 117.49855 * 145.02325 * 21 20 10 33 33 H 1.09000 * 117.49803 * 214.97557 * 22 20 10 34 34 H 1.09004 * 117.49721 * 359.97257 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0010 11 6 4.1969 -3.2205 1.1677 12 8 4.6980 -4.3296 1.1726 13 6 3.8073 -2.5864 2.4312 14 6 4.0842 -3.0573 3.6979 15 6 3.5301 -2.1459 4.6076 16 7 3.5801 -2.2403 6.0109 17 6 2.9373 -1.1546 3.8921 18 7 3.1061 -1.4104 2.5671 19 1 2.7834 -0.8570 1.8388 20 6 4.2740 -3.2551 -1.2675 21 6 4.3953 -4.7801 -1.2398 22 6 5.6440 -3.9159 -1.4331 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6801 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 4.6262 -3.9588 3.9428 27 1 4.0297 -2.9902 6.4308 28 1 3.1648 -1.5555 6.5580 29 1 2.4208 -0.3017 4.3073 30 1 3.8238 -2.8021 -2.1507 31 1 4.2715 -5.2775 -0.2779 32 1 4.0252 -5.3302 -2.1050 33 1 6.0948 -3.8979 -2.4254 34 1 6.3414 -3.8445 -0.5985 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040346034.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:45 Heat of formation + Delta-G solvation = 70.241512 kcal Electronic energy + Delta-G solvation = -18583.794852 eV Core-core repulsion = 15712.590400 eV Total energy + Delta-G solvation = -2871.204452 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.77319 -39.03998 -35.81556 -34.84838 -33.38682 -32.47537 -29.37261 -27.91641 -27.48055 -23.38955 -22.55146 -21.87095 -20.92037 -19.37676 -19.17655 -17.31817 -16.84197 -16.28948 -15.52047 -15.25405 -14.81424 -14.18052 -14.07202 -13.72591 -13.23959 -13.10176 -12.83337 -12.71356 -12.32101 -11.74927 -11.58997 -11.42144 -11.07977 -10.81642 -10.74442 -10.31547 -10.19555 -9.86681 -9.81490 -9.07450 -8.94566 -7.90538 -7.56883 -6.67438 -6.52927 -4.59579 2.18563 2.94945 3.02506 3.06490 3.50759 3.60323 3.95305 3.97202 4.11399 4.49710 4.63879 4.76105 5.21680 5.43333 5.57483 5.64866 5.81092 5.98153 6.05462 6.11723 6.21827 6.32786 6.45878 6.49307 6.56237 6.81494 7.04435 7.16476 7.32604 7.54610 7.90458 8.14451 8.17895 8.31919 8.46837 8.60000 8.85148 9.00731 10.57778 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.013392 B = 0.012473 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.248973 B = 2244.383422 C = 3923.772384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.079 3.921 3 Si 0.856 3.144 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.562 4.562 8 H 0.089 0.911 9 C 0.192 3.808 10 N -0.565 5.565 11 C 0.591 3.409 12 O -0.550 6.550 13 C -0.015 4.015 14 C -0.179 4.179 15 C 0.098 3.902 16 N -0.884 5.884 17 C -0.068 4.068 18 N -0.508 5.508 19 H 0.441 0.559 20 C 0.086 3.914 21 C -0.194 4.194 22 C -0.194 4.194 23 H 0.273 0.727 24 H 0.036 0.964 25 H 0.042 0.958 26 H 0.137 0.863 27 H 0.391 0.609 28 H 0.389 0.611 29 H 0.156 0.844 30 H 0.128 0.872 31 H 0.136 0.864 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.997 -0.672 4.038 8.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.128 4.128 3 Si 0.681 3.319 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.600 4.600 8 H 0.107 0.893 9 C 0.070 3.930 10 N -0.293 5.293 11 C 0.382 3.618 12 O -0.431 6.431 13 C -0.134 4.134 14 C -0.210 4.210 15 C -0.005 4.005 16 N -0.430 5.430 17 C -0.208 4.208 18 N -0.117 5.117 19 H 0.298 0.702 20 C -0.019 4.019 21 C -0.232 4.232 22 C -0.233 4.233 23 H 0.083 0.917 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.154 0.846 27 H 0.218 0.782 28 H 0.216 0.784 29 H 0.174 0.826 30 H 0.146 0.854 31 H 0.153 0.847 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.967 -0.927 3.689 7.937 hybrid contribution -0.042 1.327 -0.011 1.327 sum 6.925 0.400 3.678 7.851 Atomic orbital electron populations 1.69870 1.06108 1.27829 1.46427 1.24997 0.94973 0.98851 0.94023 0.87147 0.80559 0.84113 0.80114 1.18839 1.19973 1.18539 1.21529 0.88910 0.95793 1.53787 0.89339 1.20180 0.95887 0.78689 0.98245 1.47169 1.63555 1.14711 1.03826 1.17152 0.77880 0.84536 0.82211 1.90578 1.46226 1.19631 1.86649 1.20084 1.07288 0.91819 0.94256 1.20562 1.09179 1.01796 0.89476 1.16891 1.02821 0.96505 0.84319 1.41459 1.68923 1.30843 1.01781 1.21239 1.12129 1.03473 0.83937 1.43856 1.40397 1.19152 1.08322 0.70209 1.21551 0.99336 0.93219 0.87804 1.23762 1.00773 0.93549 1.05095 1.23244 0.92035 1.05978 1.02024 0.91676 0.94618 0.94049 0.84562 0.78181 0.78404 0.82642 0.85402 0.84685 0.89807 0.89257 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.58 13.96 55.43 0.77 -22.81 16 2 C 0.08 1.98 5.18 -17.82 -0.09 1.89 16 3 Si 0.86 18.20 27.08 -169.99 -4.60 13.60 16 4 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.26 6.54 56.52 0.37 -4.89 16 7 C -0.56 -14.09 7.96 -34.44 -0.27 -14.37 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 C 0.19 4.22 3.80 -5.19 -0.02 4.20 16 10 N -0.56 -12.05 2.83 -169.01 -0.48 -12.53 16 11 C 0.59 13.11 7.42 -12.87 -0.10 13.02 16 12 O -0.55 -12.43 12.62 5.19 0.07 -12.36 16 13 C -0.02 -0.33 6.63 -82.00 -0.54 -0.88 16 14 C -0.18 -3.47 10.67 -38.96 -0.42 -3.89 16 15 C 0.10 1.73 7.27 -83.88 -0.61 1.12 16 16 N -0.88 -11.65 9.19 32.31 0.30 -11.35 16 17 C -0.07 -1.26 11.93 -16.55 -0.20 -1.46 16 18 N -0.51 -10.74 4.85 -9.19 -0.04 -10.79 16 19 H 0.44 9.78 2.94 -40.82 -0.12 9.66 16 20 C 0.09 1.61 6.60 -67.92 -0.45 1.16 16 21 C -0.19 -3.43 9.63 -26.69 -0.26 -3.69 16 22 C -0.19 -3.21 9.87 -26.69 -0.26 -3.47 16 23 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 24 H 0.04 0.79 4.26 -51.93 -0.22 0.57 16 25 H 0.04 0.86 7.49 -51.93 -0.39 0.47 16 26 H 0.14 2.47 8.06 -52.49 -0.42 2.05 16 27 H 0.39 4.43 8.96 -40.82 -0.37 4.07 16 28 H 0.39 4.26 8.96 -40.82 -0.37 3.90 16 29 H 0.16 2.46 8.06 -52.48 -0.42 2.03 16 30 H 0.13 2.24 8.14 -51.93 -0.42 1.82 16 31 H 0.14 2.73 5.23 -52.09 -0.27 2.45 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.09 1.68 7.57 -51.93 -0.39 1.29 16 LS Contribution 280.56 15.07 4.23 4.23 Total: -1.00 -28.35 280.56 -6.81 -35.16 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -3.83 Total: 23.22 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -3.22 Total: -6.36 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.55 Total: -57.48 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -4.60 Total: 13.60 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.35 -6.81 -35.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040346034.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.398 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds