Wall clock time and date at job start Mon Mar 30 2020 04:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34505 * 125.79427 * 2 1 4 4 C 1.41382 * 106.84461 * 180.02562 * 3 2 1 5 5 C 1.34515 * 106.83997 * 359.97438 * 4 3 2 6 6 C 1.50692 * 125.78931 * 179.97438 * 5 4 3 7 7 H 1.08994 * 109.47697 * 20.00495 * 6 5 4 8 8 C 1.53005 * 109.47169 * 260.00371 * 6 5 4 9 9 N 1.46901 * 109.47090 * 185.00326 * 8 6 5 10 10 N 1.46506 * 109.47049 * 140.00540 * 6 5 4 11 11 C 1.36931 * 119.99996 * 246.40766 * 10 6 5 12 12 H 1.08001 * 120.00175 * 210.31493 * 11 10 6 13 13 C 1.38815 * 119.99697 * 30.31491 * 11 10 6 14 14 N 1.31613 * 120.00513 * 18.04858 * 13 11 10 15 15 Si 1.86805 * 119.99869 * 198.04835 * 13 11 10 16 16 H 1.48502 * 109.47039 * 90.00027 * 15 13 11 17 17 H 1.48494 * 109.47139 * 210.00122 * 15 13 11 18 18 H 1.48498 * 109.47026 * 330.00185 * 15 13 11 19 19 C 1.46500 * 119.99895 * 66.41020 * 10 6 5 20 20 C 1.47200 * 109.46951 * 263.88897 * 19 10 6 21 21 N 3.59479 * 86.01424 * 149.94653 * 2 1 3 22 22 O 1.34307 * 125.78424 * 180.34671 * 2 1 3 23 23 H 1.09001 * 109.46578 * 89.99817 * 1 2 3 24 24 H 1.08996 * 109.47576 * 210.00056 * 1 2 3 25 25 H 1.08995 * 109.46843 * 330.00252 * 1 2 3 26 26 H 1.08002 * 126.57647 * 0.02562 * 3 2 1 27 27 H 1.07999 * 126.58253 * 180.02562 * 4 3 2 28 28 H 1.09007 * 109.47107 * 304.99875 * 8 6 5 29 29 H 1.08993 * 109.47328 * 65.00084 * 8 6 5 30 30 H 1.00904 * 111.00309 * 56.04448 * 9 8 6 31 31 H 1.00899 * 110.99958 * 180.02562 * 9 8 6 32 32 H 0.97000 * 120.00650 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.46988 * 143.88697 * 19 10 6 34 34 H 1.08998 * 109.47150 * 23.89052 * 19 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0910 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5814 -0.7124 -0.0004 6 6 4.7705 -1.6380 -0.0014 7 1 5.6507 -1.0993 0.3492 8 6 5.0178 -2.1491 -1.4222 9 7 6.0998 -3.1425 -1.4038 10 7 4.5067 -2.7729 0.8868 11 6 5.2407 -2.9312 2.0319 12 1 5.4273 -3.9212 2.4212 13 6 5.7449 -1.8192 2.6923 14 7 5.2449 -0.6263 2.4490 15 14 7.1332 -2.0159 3.9267 16 1 8.4377 -1.8844 3.2295 17 1 7.0210 -0.9647 4.9694 18 1 7.0444 -3.3550 4.5623 19 6 3.4576 -3.7383 0.5498 20 6 2.2161 -3.3798 1.2548 21 7 1.2572 -3.1040 1.7959 22 8 2.2924 -1.0895 -0.0066 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.9666 2.1203 0.0004 27 1 4.5213 1.2431 -0.0004 28 1 4.1077 -2.6103 -1.8060 29 1 5.3011 -1.3151 -2.0641 30 1 5.8891 -3.8950 -0.7654 31 1 6.2826 -3.4953 -2.3313 32 1 5.5970 0.1507 2.9107 33 1 3.7721 -4.7370 0.8527 34 1 3.2820 -3.7234 -0.5258 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043363885.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:41 Heat of formation + Delta-G solvation = 69.041016 kcal Electronic energy + Delta-G solvation = -19019.736160 eV Core-core repulsion = 16148.479651 eV Total energy + Delta-G solvation = -2871.256509 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.57894 -37.18984 -35.12491 -33.20678 -32.26292 -31.33320 -31.25430 -28.44692 -26.72874 -24.56927 -23.14337 -20.88909 -20.53154 -19.12647 -17.41537 -16.57384 -16.01063 -15.19018 -14.96355 -14.63443 -14.38970 -14.03911 -13.52536 -13.00955 -12.80382 -12.61025 -12.50903 -12.19217 -11.88339 -11.67350 -11.58999 -11.31124 -11.26185 -10.91968 -10.84825 -10.53881 -10.48537 -10.11412 -10.06654 -8.87487 -8.72783 -8.09378 -7.24146 -7.07797 -5.94915 -3.49417 2.70533 3.34490 3.40286 3.42371 3.59698 3.67478 3.86834 4.07811 4.42627 5.13490 5.16060 5.23573 5.38616 5.51310 5.71692 5.80882 5.86099 5.87646 5.99183 6.04636 6.12437 6.19496 6.27367 6.45128 6.78290 6.83531 7.08356 7.25600 7.52086 7.66341 7.73207 8.08045 8.17298 8.24071 8.71434 8.93786 9.55066 10.03443 11.09714 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019426 B = 0.009698 C = 0.009274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.018038 B = 2886.401725 C = 3018.365348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.046 4.046 3 C -0.213 4.213 4 C -0.207 4.207 5 C 0.040 3.960 6 C 0.271 3.729 7 H 0.131 0.869 8 C 0.047 3.953 9 N -0.838 5.838 10 N -0.557 5.557 11 C -0.280 4.280 12 H 0.077 0.923 13 C 0.020 3.980 14 N -0.878 5.878 15 Si 0.907 3.093 16 H -0.282 1.282 17 H -0.293 1.293 18 H -0.278 1.278 19 C 0.218 3.782 20 C 0.209 3.791 21 N -0.477 5.477 22 O -0.170 6.170 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.016 0.984 29 H 0.067 0.933 30 H 0.352 0.648 31 H 0.327 0.673 32 H 0.258 0.742 33 H 0.088 0.912 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -1.611 -8.772 9.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.096 4.096 3 C -0.232 4.232 4 C -0.227 4.227 5 C -0.014 4.014 6 C 0.163 3.837 7 H 0.148 0.852 8 C -0.085 4.085 9 N -0.369 5.369 10 N -0.276 5.276 11 C -0.409 4.409 12 H 0.095 0.905 13 C -0.182 4.182 14 N -0.518 5.518 15 Si 0.737 3.263 16 H -0.209 1.209 17 H -0.219 1.219 18 H -0.203 1.203 19 C 0.088 3.912 20 C -0.111 4.111 21 N -0.157 5.157 22 O -0.066 6.066 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.094 0.906 26 H 0.148 0.852 27 H 0.151 0.849 28 H 0.034 0.966 29 H 0.085 0.915 30 H 0.167 0.833 31 H 0.137 0.863 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.800 -0.753 -7.607 8.141 hybrid contribution 0.232 -0.140 0.468 0.541 sum -2.567 -0.893 -7.139 7.639 Atomic orbital electron populations 1.20097 0.86848 1.03205 1.01928 1.22017 0.93320 0.85009 1.09242 1.21352 0.93585 0.98147 1.10139 1.21151 0.96628 0.94253 1.10634 1.23502 0.82427 0.95285 1.00140 1.19191 0.91313 0.85882 0.87272 0.85174 1.22305 0.91827 0.95882 0.98499 1.58479 1.45654 1.20267 1.12484 1.44138 1.33150 1.26528 1.23791 1.19139 1.26629 0.92719 1.02374 0.90528 1.25201 0.99537 0.96005 0.97466 1.70106 1.39750 0.98473 1.43490 0.86235 0.82307 0.77378 0.80425 1.20870 1.21923 1.20308 1.18916 0.80573 0.95730 0.96016 1.31111 0.94354 0.92344 0.93255 1.80822 1.14066 1.09935 1.10912 1.83950 1.16912 1.34405 1.71383 0.91469 0.91145 0.90594 0.85246 0.84897 0.96550 0.91459 0.83342 0.86253 0.93145 0.89442 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 10.42 36.01 0.38 -0.65 16 2 C -0.05 -0.93 7.32 -35.63 -0.26 -1.19 16 3 C -0.21 -4.27 10.81 -39.71 -0.43 -4.70 16 4 C -0.21 -4.46 10.63 -39.70 -0.42 -4.88 16 5 C 0.04 0.87 5.28 -35.63 -0.19 0.68 16 6 C 0.27 5.71 1.95 -69.08 -0.13 5.57 16 7 H 0.13 3.16 6.17 -51.93 -0.32 2.84 16 8 C 0.05 0.80 5.93 -3.82 -0.02 0.77 16 9 N -0.84 -12.83 9.61 -10.37 -0.10 -12.93 16 10 N -0.56 -12.01 1.52 -170.30 -0.26 -12.27 16 11 C -0.28 -6.82 9.53 -15.06 -0.14 -6.96 16 12 H 0.08 1.82 7.89 -52.49 -0.41 1.41 16 13 C 0.02 0.52 4.83 -17.43 -0.08 0.43 16 14 N -0.88 -23.66 10.60 55.49 0.59 -23.08 16 15 Si 0.91 20.66 29.59 -169.99 -5.03 15.63 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 19 C 0.22 4.02 5.18 -6.83 -0.04 3.98 16 20 C 0.21 4.54 13.02 -20.79 -0.27 4.27 16 21 N -0.48 -11.26 18.42 42.12 0.78 -10.48 16 22 O -0.17 -3.76 7.36 5.68 0.04 -3.71 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 27 H 0.13 2.77 8.06 -52.49 -0.42 2.34 16 28 H 0.02 0.26 6.69 -51.93 -0.35 -0.09 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.35 5.47 7.82 -39.29 -0.31 5.16 16 31 H 0.33 3.98 9.08 -39.29 -0.36 3.62 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.09 1.39 8.09 -51.93 -0.42 0.97 16 34 H 0.08 1.28 6.21 -51.93 -0.32 0.96 16 LS Contribution 292.25 15.07 4.40 4.40 Total: -1.00 -29.94 292.25 -5.35 -35.29 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -4.16 Total: 9.81 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.62 Total: -2.66 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 1.01 Total: -58.76 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: 0.04 Total: -3.71 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.94 -5.35 -35.29 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043363885.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.331 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds