Wall clock time and date at job start Mon Mar 30 2020 03:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38677 * 120.41881 * 2 1 4 4 C 1.38628 * 118.41857 * 179.97438 * 3 2 1 5 5 C 1.38215 * 119.16579 * 0.02562 * 4 3 2 6 6 N 1.31854 * 120.76332 * 359.97438 * 5 4 3 7 7 C 1.31888 * 121.72838 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.61911 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47173 * 90.00247 * 8 7 6 10 10 C 1.46902 * 111.00190 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47450 * 179.97438 * 10 9 8 12 12 O 1.21295 * 119.99918 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00542 * 180.02562 * 11 10 9 14 14 C 1.37099 * 120.00321 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99802 * 359.97438 * 14 13 11 16 16 C 1.38944 * 119.99701 * 179.97438 * 14 13 11 17 17 N 1.31404 * 120.00545 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99692 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46914 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47156 * 120.00381 * 18 16 14 21 21 H 1.48503 * 109.46830 * 239.99971 * 18 16 14 22 22 H 1.08996 * 109.47087 * 89.99893 * 1 2 3 23 23 H 1.09004 * 109.46666 * 209.99686 * 1 2 3 24 24 H 1.08994 * 109.46982 * 329.99952 * 1 2 3 25 25 H 1.08003 * 120.78604 * 359.96123 * 3 2 1 26 26 H 1.08005 * 120.41354 * 179.97438 * 4 3 2 27 27 H 1.07995 * 119.62265 * 180.02562 * 5 4 3 28 28 H 1.09011 * 109.46908 * 210.00177 * 8 7 6 29 29 H 1.09003 * 109.47334 * 329.99700 * 8 7 6 30 30 H 1.00901 * 110.99927 * 56.04577 * 9 8 7 31 31 H 1.09000 * 109.47328 * 300.00263 * 10 9 8 32 32 H 1.09002 * 109.46941 * 59.99847 * 10 9 8 33 33 H 0.97002 * 119.99450 * 359.97438 * 13 11 10 34 34 H 0.97000 * 120.00610 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1959 0.0000 4 6 3.5946 1.1475 0.0005 5 6 4.2256 -0.0822 0.0005 6 7 3.5255 -1.1995 0.0005 7 6 2.2067 -1.1916 0.0000 8 6 1.4541 -2.4972 -0.0006 9 7 1.2090 -2.9217 1.3841 10 6 0.4750 -4.1936 1.4228 11 6 0.2431 -4.5965 2.8563 12 8 0.6489 -3.8929 3.7572 13 7 -0.4152 -5.7385 3.1374 14 6 -0.6266 -6.1047 4.4416 15 1 -0.2653 -5.4782 5.2437 16 6 -1.3057 -7.2817 4.7312 17 7 -1.7458 -8.0437 3.7553 18 14 -1.5931 -7.7811 6.5082 19 1 -1.0041 -6.7596 7.4108 20 1 -3.0524 -7.8842 6.7636 21 1 -0.9520 -9.0961 6.7627 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 1.6889 2.1424 -0.0006 26 1 4.1735 2.0593 0.0001 27 1 5.3046 -0.1285 0.0014 28 1 0.5017 -2.3673 -0.5148 29 1 2.0438 -3.2563 -0.5144 30 1 0.7193 -2.2062 1.9004 31 1 -0.4841 -4.0752 0.9186 32 1 1.0576 -4.9647 0.9188 33 1 -0.7400 -6.3009 2.4169 34 1 -2.2195 -8.8656 3.9575 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070908800.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:51 Heat of formation + Delta-G solvation = -4.115283 kcal Electronic energy + Delta-G solvation = -17173.907653 eV Core-core repulsion = 14299.478848 eV Total energy + Delta-G solvation = -2874.428805 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41860 -38.23380 -35.67843 -33.88596 -33.58477 -32.03979 -31.16677 -28.18589 -27.09869 -25.19685 -23.52632 -22.52082 -21.46519 -19.26181 -17.88823 -16.87314 -16.81038 -15.85490 -15.32668 -14.95305 -14.69289 -14.48918 -14.03575 -13.50520 -13.46358 -13.24029 -13.13668 -12.78458 -12.62043 -12.29686 -11.75205 -11.61307 -11.47903 -11.31441 -11.02827 -10.32286 -10.20314 -9.81183 -9.49651 -9.41308 -8.91193 -8.44278 -8.02555 -7.93177 -6.39387 -3.80036 1.00341 1.21804 3.18305 3.28689 3.36259 3.63509 3.93881 4.14870 4.25328 4.49335 4.66819 4.72135 4.82779 4.90715 5.15782 5.27145 5.27802 5.39375 5.42451 5.47766 5.59353 5.76301 5.82164 5.87543 6.00291 6.07818 6.15389 6.28649 6.63174 7.18983 7.57863 7.64675 8.02078 8.09192 8.64097 9.20600 9.56990 10.08690 10.78498 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.047311 B = 0.003756 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.686592 B = 7453.838491 C = 7510.085148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.132 4.132 3 C -0.079 4.079 4 C -0.175 4.175 5 C 0.093 3.907 6 N -0.462 5.462 7 C 0.140 3.860 8 C 0.105 3.895 9 N -0.659 5.659 10 C 0.051 3.949 11 C 0.442 3.558 12 O -0.582 6.582 13 N -0.564 5.564 14 C -0.298 4.298 15 H 0.103 0.897 16 C 0.022 3.978 17 N -0.902 5.902 18 Si 0.929 3.071 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.281 1.281 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.132 0.868 26 H 0.132 0.868 27 H 0.154 0.846 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.348 0.652 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.392 0.608 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.297 14.846 -11.482 19.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.135 4.135 3 C -0.105 4.105 4 C -0.195 4.195 5 C -0.064 4.064 6 N -0.170 5.170 7 C 0.001 3.999 8 C -0.025 4.025 9 N -0.292 5.292 10 C -0.081 4.081 11 C 0.227 3.773 12 O -0.466 6.466 13 N -0.201 5.201 14 C -0.428 4.428 15 H 0.121 0.879 16 C -0.180 4.180 17 N -0.544 5.544 18 Si 0.756 3.244 19 H -0.192 1.192 20 H -0.208 1.208 21 H -0.207 1.207 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.150 0.850 26 H 0.150 0.850 27 H 0.171 0.829 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.167 0.833 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.226 0.774 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.519 14.021 -10.780 18.527 hybrid contribution -1.588 0.482 0.153 1.666 sum 3.931 14.503 -10.627 18.404 Atomic orbital electron populations 1.20798 0.90303 1.03435 1.02550 1.20780 0.97540 0.93740 1.01411 1.21437 0.94198 0.97894 0.96937 1.22113 0.95262 0.99605 1.02525 1.22756 1.00320 0.87654 0.95713 1.67502 1.07758 1.31264 1.10508 1.21017 0.89771 0.94182 0.94892 1.20831 0.97359 0.92874 0.91391 1.60027 1.53274 1.05262 1.10619 1.21698 0.96644 0.92775 0.97024 1.19786 0.83947 0.83877 0.89689 1.90531 1.54542 1.54016 1.47526 1.41858 1.49583 1.19855 1.08788 1.19759 1.33390 1.05613 0.84011 0.87881 1.25254 0.96953 0.96027 0.99730 1.69616 1.38646 1.14262 1.31844 0.85804 0.77902 0.78543 0.82122 1.19222 1.20795 1.20734 0.90816 0.91086 0.91076 0.85013 0.84986 0.82864 0.93583 0.89202 0.83253 0.93721 0.89267 0.77438 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.21 36.01 0.33 -0.74 16 2 C -0.13 -1.54 5.90 -104.48 -0.62 -2.16 16 3 C -0.08 -0.79 9.86 -39.28 -0.39 -1.18 16 4 C -0.17 -1.71 10.11 -39.45 -0.40 -2.11 16 5 C 0.09 1.09 11.18 -17.55 -0.20 0.89 16 6 N -0.46 -6.86 10.27 -9.48 -0.10 -6.96 16 7 C 0.14 1.96 6.29 -82.59 -0.52 1.44 16 8 C 0.10 1.46 5.22 -4.98 -0.03 1.43 16 9 N -0.66 -11.47 6.11 -116.34 -0.71 -12.19 16 10 C 0.05 0.93 6.17 -4.98 -0.03 0.89 16 11 C 0.44 10.69 7.82 -10.99 -0.09 10.60 16 12 O -0.58 -16.31 15.78 5.54 0.09 -16.22 16 13 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 14 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 15 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 17 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 18 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 0.74 6.05 -51.93 -0.31 0.42 16 24 H 0.07 0.58 8.09 -51.93 -0.42 0.15 16 25 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 26 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 27 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.05 0.54 6.69 -51.92 -0.35 0.19 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.35 6.20 7.74 -39.29 -0.30 5.90 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 297.00 15.07 4.48 4.48 Total: -1.00 -33.32 297.00 -6.95 -40.27 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -4.18 Total: 11.98 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -2.17 Total: 0.99 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.14 Total: -57.73 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.09 Total: -16.22 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.32 -6.95 -40.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070908800.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.153 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds