Wall clock time and date at job start Mon Mar 30 2020 04:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.72665 * 2 1 4 4 C 1.53533 * 109.59952 * 120.39668 * 2 1 3 5 5 N 1.47234 * 107.66448 * 61.67463 * 4 2 1 6 6 C 1.36876 * 121.07362 * 222.42740 * 5 4 2 7 7 H 1.07998 * 120.00212 * 154.13597 * 6 5 4 8 8 C 1.38775 * 120.00019 * 333.85652 * 6 5 4 9 9 N 1.31591 * 120.00125 * 160.64029 * 8 6 5 10 10 Si 1.86801 * 119.99820 * 340.64681 * 8 6 5 11 11 H 1.48498 * 109.47267 * 89.14439 * 10 8 6 12 12 H 1.48500 * 109.46936 * 209.14437 * 10 8 6 13 13 H 1.48495 * 109.47203 * 329.14368 * 10 8 6 14 14 C 1.39422 * 117.85033 * 42.69348 * 5 4 2 15 15 N 1.32596 * 119.79473 * 165.63988 * 14 5 4 16 16 C 1.32376 * 121.55665 * 179.84169 * 15 14 5 17 17 N 1.39213 * 119.60465 * 179.97438 * 16 15 14 18 18 C 1.39042 * 120.78874 * 359.97438 * 16 15 14 19 19 C 1.38920 * 119.35271 * 359.55146 * 18 16 15 20 20 C 1.38959 * 118.44921 * 0.76441 * 19 18 16 21 21 O 1.35862 * 119.77323 * 179.04149 * 20 19 18 22 22 H 1.09002 * 109.46795 * 299.59800 * 1 2 3 23 23 H 1.08997 * 109.46987 * 59.60165 * 1 2 3 24 24 H 1.09003 * 109.46677 * 179.60409 * 1 2 3 25 25 H 1.09007 * 109.46895 * 180.39862 * 3 2 1 26 26 H 1.08999 * 109.47344 * 300.39402 * 3 2 1 27 27 H 1.08999 * 109.47486 * 60.40144 * 3 2 1 28 28 H 1.09002 * 109.82459 * 302.13332 * 4 2 1 29 29 H 1.09004 * 109.87604 * 181.23842 * 4 2 1 30 30 H 0.97006 * 119.99728 * 0.02562 * 9 8 6 31 31 H 0.97003 * 119.99721 * 354.84562 * 17 16 15 32 32 H 0.97004 * 119.99964 * 174.85681 * 17 16 15 33 33 H 1.07998 * 120.33671 * 180.10317 * 18 16 15 34 34 H 1.08004 * 120.81612 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0465 1.4402 0.0000 4 6 2.0451 -0.7318 1.2476 5 7 1.5679 -2.1230 1.1783 6 6 1.0770 -2.7575 2.2873 7 1 0.3716 -3.5680 2.1779 8 6 1.4900 -2.3631 3.5522 9 7 0.7711 -2.6803 4.6077 10 14 3.0664 -1.3820 3.7562 11 1 2.7635 0.0682 3.6547 12 1 3.6611 -1.6716 5.0858 13 1 4.0279 -1.7627 2.6905 14 6 1.6374 -2.7750 -0.0521 15 7 1.4943 -4.0919 -0.1089 16 6 1.5511 -4.7460 -1.2584 17 7 1.3959 -6.1294 -1.2709 18 6 1.7637 -4.0678 -2.4534 19 6 1.9085 -2.6863 -2.4359 20 6 1.8508 -2.0301 -1.2124 21 8 2.0086 -0.6816 -1.1620 22 1 -0.3633 0.5076 0.8936 23 1 -0.3633 0.5200 -0.8864 24 1 -0.3633 -1.0277 -0.0071 25 1 3.1365 1.4353 -0.0072 26 1 1.6797 1.9577 -0.8864 27 1 1.6914 1.9536 0.8935 28 1 1.6553 -0.2516 2.1451 29 1 3.1349 -0.7154 1.2634 30 1 -0.0474 -3.1900 4.5017 31 1 1.3221 -6.6167 -0.4354 32 1 1.3617 -6.6060 -2.1150 33 1 1.8071 -4.6086 -3.3873 34 1 2.0750 -2.1358 -3.3501 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077018516.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:24 Heat of formation + Delta-G solvation = -0.988075 kcal Electronic energy + Delta-G solvation = -19049.946715 eV Core-core repulsion = 16175.653517 eV Total energy + Delta-G solvation = -2874.293199 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.94496 -39.59988 -37.50866 -35.44903 -34.44879 -33.25582 -32.41038 -28.95446 -28.23008 -27.85481 -26.02727 -23.45185 -23.15855 -21.05982 -20.14102 -18.78647 -18.20237 -17.84169 -16.80663 -16.52516 -16.09754 -16.00450 -15.67867 -15.27666 -14.89010 -14.51807 -14.32387 -13.88628 -13.81362 -13.43009 -13.07504 -12.97659 -12.91377 -12.54211 -12.33654 -12.04650 -11.84501 -11.61884 -11.16436 -10.84048 -10.44573 -10.01372 -9.51251 -8.97608 -8.07895 -5.89887 0.66107 0.80597 1.25473 1.44669 1.58103 2.26195 2.29561 2.45266 2.86676 3.06290 3.29790 3.58794 3.81144 3.93919 3.98999 4.23111 4.25769 4.44550 4.56820 4.70549 4.72417 4.79579 4.90050 4.91238 5.13622 5.17972 5.29081 5.35360 5.53439 5.77854 5.83073 6.34908 6.53567 6.67194 6.79641 7.11868 7.43288 7.83914 8.45665 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018796 B = 0.011650 C = 0.008161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.283692 B = 2402.796254 C = 3430.237504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.095 3.905 3 C -0.129 4.129 4 C 0.065 3.935 5 N -0.473 5.473 6 C -0.354 4.354 7 H 0.048 0.952 8 C -0.037 4.037 9 N -0.912 5.912 10 Si 1.087 2.913 11 H -0.236 1.236 12 H -0.288 1.288 13 H -0.282 1.282 14 C 0.344 3.656 15 N -0.611 5.611 16 C 0.400 3.600 17 N -0.847 5.847 18 C -0.293 4.293 19 C -0.027 4.027 20 C -0.085 4.085 21 O -0.309 6.309 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.023 0.977 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.067 0.933 30 H 0.259 0.741 31 H 0.397 0.603 32 H 0.419 0.581 33 H 0.159 0.841 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.017 5.080 -12.967 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.056 3.944 3 C -0.186 4.186 4 C -0.058 4.058 5 N -0.172 5.172 6 C -0.483 4.483 7 H 0.066 0.934 8 C -0.237 4.237 9 N -0.547 5.547 10 Si 0.909 3.091 11 H -0.160 1.160 12 H -0.215 1.215 13 H -0.208 1.208 14 C 0.105 3.895 15 N -0.341 5.341 16 C 0.161 3.839 17 N -0.394 5.394 18 C -0.321 4.321 19 C -0.052 4.052 20 C -0.138 4.138 21 O -0.223 6.223 22 H 0.094 0.906 23 H 0.102 0.898 24 H 0.042 0.958 25 H 0.092 0.908 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.225 0.775 32 H 0.251 0.749 33 H 0.176 0.824 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.885 5.666 -10.988 12.959 hybrid contribution -1.472 -1.720 -0.997 2.474 sum 2.412 3.946 -11.984 12.846 Atomic orbital electron populations 1.22168 0.94483 1.01109 1.03429 1.22287 0.94434 0.94104 0.83618 1.21775 1.02541 0.89457 1.04837 1.23017 0.99095 0.82594 1.01107 1.42780 1.59906 1.09135 1.05392 1.20145 1.23606 1.19441 0.85091 0.93448 1.27530 1.04978 1.00893 0.90295 1.70963 1.15179 1.37125 1.31480 0.83594 0.72459 0.77307 0.75705 1.16038 1.21538 1.20771 1.18639 0.96193 0.87763 0.86857 1.66507 1.29864 1.08394 1.29360 1.18393 0.90328 0.86617 0.88599 1.42025 1.83397 1.02198 1.11735 1.21048 1.19460 0.93896 0.97702 1.20802 0.95821 0.93643 0.94957 1.19004 1.17957 0.83488 0.93312 1.85903 1.78629 1.15873 1.41945 0.90597 0.89778 0.95801 0.90773 0.89267 0.88647 0.88351 0.91538 0.93198 0.77458 0.74851 0.82383 0.82194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 8.46 71.98 0.61 -4.77 16 2 C 0.09 3.34 1.13 -10.61 -0.01 3.32 16 3 C -0.13 -3.12 8.88 71.98 0.64 -2.48 16 4 C 0.07 2.78 3.09 86.42 0.27 3.05 16 5 N -0.47 -24.43 2.19 -514.30 -1.13 -25.56 16 6 C -0.35 -20.88 9.54 84.03 0.80 -20.08 16 7 H 0.05 3.17 7.90 -2.91 -0.02 3.15 16 8 C -0.04 -2.13 5.26 84.86 0.45 -1.69 16 9 N -0.91 -55.48 13.70 21.64 0.30 -55.18 16 10 Si 1.09 49.78 24.52 68.60 1.68 51.46 16 11 H -0.24 -9.00 6.55 99.48 0.65 -8.34 16 12 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.28 -12.80 6.54 99.48 0.65 -12.15 16 14 C 0.34 17.11 6.55 132.96 0.87 17.98 16 15 N -0.61 -30.33 9.59 -189.70 -1.82 -32.15 16 16 C 0.40 15.67 7.74 132.98 1.03 16.70 16 17 N -0.85 -25.01 9.08 -55.37 -0.50 -25.52 16 18 C -0.29 -9.68 9.94 22.63 0.22 -9.45 16 19 C -0.03 -0.92 10.11 22.61 0.23 -0.69 16 20 C -0.09 -3.60 6.04 22.75 0.14 -3.46 16 21 O -0.31 -11.84 9.73 -92.00 -0.90 -12.73 16 22 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 23 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.02 1.01 6.79 -2.39 -0.02 0.99 16 25 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.10 4.13 5.29 -2.39 -0.01 4.11 16 29 H 0.07 2.76 6.28 -2.39 -0.01 2.75 16 30 H 0.26 16.00 8.73 -92.70 -0.81 15.19 16 31 H 0.40 11.98 8.95 -92.71 -0.83 11.15 16 32 H 0.42 8.66 8.83 -92.71 -0.82 7.84 16 33 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 34 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -73.00 275.35 2.22 -70.78 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -0.66 Total: 30.46 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 5.24 Total: -1.57 kcal Atomic # 7 Polarization: -135.25 SS G_CDS: -3.15 Total: -138.40 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -0.90 Total: -12.73 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 1.68 Total: 51.46 kcal Total: -73.00 2.22 -70.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077018516.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.794 kcal (2) G-P(sol) polarization free energy of solvation -73.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds