Wall clock time and date at job start Mon Mar 30 2020 03:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38224 * 119.62022 * 2 1 4 4 C 1.38630 * 119.16347 * 179.97438 * 3 2 1 5 5 C 1.38675 * 118.41860 * 0.25530 * 4 3 2 6 6 C 1.50699 * 120.41772 * 179.74920 * 5 4 3 7 7 N 1.46497 * 109.47123 * 89.99701 * 6 5 4 8 8 C 1.34776 * 120.00194 * 179.97438 * 7 6 5 9 9 O 1.21585 * 120.00197 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99923 * 180.02562 * 8 7 6 11 11 C 1.46509 * 119.99755 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47014 * 180.02562 * 11 10 8 13 13 H 1.07998 * 119.99852 * 359.97438 * 12 11 10 14 14 C 1.37870 * 119.99951 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00180 * 179.97438 * 14 12 11 16 16 Si 1.86807 * 119.99995 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47115 * 90.00527 * 16 14 12 18 18 H 1.48505 * 109.46983 * 210.00384 * 16 14 12 19 19 H 1.48497 * 109.47071 * 330.00037 * 16 14 12 20 20 C 1.38181 * 119.15910 * 359.47628 * 5 4 3 21 21 N 1.31857 * 119.61823 * 179.97438 * 2 1 3 22 22 H 1.09007 * 109.46662 * 89.99795 * 1 2 3 23 23 H 1.08999 * 109.47158 * 209.99996 * 1 2 3 24 24 H 1.08991 * 109.47069 * 330.00334 * 1 2 3 25 25 H 1.07997 * 120.41892 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.78834 * 179.97438 * 4 3 2 27 27 H 1.09002 * 109.46977 * 209.99446 * 6 5 4 28 28 H 1.08994 * 109.47024 * 329.99906 * 6 5 4 29 29 H 0.97003 * 120.00009 * 0.02562 * 7 6 5 30 30 H 0.97000 * 120.00504 * 0.02562 * 10 8 7 31 31 H 1.08996 * 109.46779 * 299.99663 * 11 10 8 32 32 H 1.08994 * 109.47179 * 60.00125 * 11 10 8 33 33 H 0.97000 * 120.00237 * 179.97438 * 15 14 12 34 34 H 1.08008 * 119.61503 * 180.25015 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1906 0.0005 5 6 4.2267 -0.0343 -0.0044 6 6 5.7323 -0.0989 -0.0097 7 7 6.2249 -0.1227 1.3698 8 6 7.5495 -0.1805 1.6114 9 8 8.3358 -0.2124 0.6845 10 7 8.0027 -0.2030 2.8805 11 6 9.4427 -0.2653 3.1431 12 6 9.6818 -0.2797 4.6310 13 1 8.8448 -0.2455 5.3127 14 6 10.9689 -0.3356 5.1218 15 7 11.1776 -0.3477 6.4203 16 14 12.4165 -0.3941 3.9426 17 1 12.8596 0.9892 3.6337 18 1 13.5351 -1.1439 4.5687 19 1 12.0058 -1.0741 2.6880 20 6 3.4766 -1.1948 0.0014 21 7 2.1587 -1.1463 0.0005 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5137 25 1 1.6508 2.1373 0.0004 26 1 4.1366 2.1139 0.0001 27 1 6.0553 -1.0025 -0.5265 28 1 6.1316 0.7758 -0.5230 29 1 5.5976 -0.0977 2.1093 30 1 7.3755 -0.1779 3.6200 31 1 9.8537 -1.1726 2.7006 32 1 9.9299 0.6057 2.7049 33 1 12.0832 -0.3874 6.7656 34 1 3.9754 -2.1528 0.0018 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243320323.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:34 Heat of formation + Delta-G solvation = -3.800499 kcal Electronic energy + Delta-G solvation = -16899.267060 eV Core-core repulsion = 14024.851906 eV Total energy + Delta-G solvation = -2874.415155 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.62733 -39.24033 -35.47321 -34.17737 -32.83160 -32.57149 -32.19888 -29.11846 -27.57287 -25.09828 -23.73400 -22.17172 -21.52817 -20.32957 -18.35737 -16.97169 -16.65171 -16.27874 -15.95310 -15.10877 -14.94374 -14.73489 -14.35259 -13.84585 -13.47606 -13.28823 -13.09982 -12.96623 -12.69470 -12.50591 -12.34634 -12.04840 -11.72585 -10.97629 -10.75110 -10.14211 -9.95565 -9.74040 -9.66039 -9.45518 -9.09244 -8.90698 -8.74479 -8.01897 -6.19785 -4.21764 0.73189 1.00371 3.18417 3.28960 3.35880 3.44547 3.64413 3.78673 4.00720 4.35364 4.43738 4.49263 4.67425 4.73484 4.97554 5.08471 5.15823 5.23001 5.25259 5.35049 5.58578 5.64376 5.74426 5.83217 6.05639 6.42134 6.69059 6.74191 7.12533 7.24274 7.40627 7.55978 7.71610 8.28865 8.68924 8.81875 9.19356 9.41526 10.92228 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.050168 B = 0.003556 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.993162 B = 7873.102871 C = 8127.115150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.128 3.872 3 C -0.175 4.175 4 C -0.052 4.052 5 C -0.161 4.161 6 C 0.188 3.812 7 N -0.753 5.753 8 C 0.695 3.305 9 O -0.603 6.603 10 N -0.722 5.722 11 C 0.238 3.762 12 C -0.542 4.542 13 H 0.079 0.921 14 C 0.077 3.923 15 N -0.894 5.894 16 Si 0.877 3.123 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.260 1.260 20 C 0.124 3.876 21 N -0.487 5.487 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.394 0.606 30 H 0.392 0.608 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.267 0.733 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.858 2.561 -12.516 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.010 4.010 3 C -0.195 4.195 4 C -0.079 4.079 5 C -0.163 4.163 6 C 0.063 3.937 7 N -0.410 5.410 8 C 0.395 3.605 9 O -0.483 6.483 10 N -0.374 5.374 11 C 0.116 3.884 12 C -0.580 4.580 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.531 5.531 16 Si 0.704 3.296 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.184 1.184 20 C -0.034 4.034 21 N -0.196 5.196 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.153 0.847 26 H 0.155 0.845 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.227 0.773 30 H 0.226 0.774 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -19.403 1.742 -13.215 23.541 hybrid contribution 0.763 0.853 0.272 1.176 sum -18.641 2.595 -12.943 22.842 Atomic orbital electron populations 1.20730 0.88831 1.03571 1.03099 1.21380 0.97135 0.88471 0.93980 1.21975 0.94792 0.99355 1.03398 1.21601 0.94313 0.98102 0.93862 1.20980 0.96886 0.94472 1.03985 1.19808 0.87012 1.03203 0.83716 1.45161 1.06027 1.82173 1.07673 1.16102 0.81719 0.78273 0.84417 1.90868 1.55032 1.58886 1.43489 1.45402 1.10434 1.77121 1.04453 1.19367 0.75525 0.96633 0.96920 1.21097 0.94499 1.53062 0.89381 0.90316 1.24785 0.98787 0.93902 0.95175 1.69882 1.21861 1.49533 1.11834 0.86806 0.82068 0.78996 0.81758 1.19862 1.20943 1.18401 1.22767 0.89057 0.98237 0.93321 1.67588 1.09800 1.29326 1.12920 0.90372 0.90380 0.90660 0.84689 0.84459 0.90665 0.90841 0.77306 0.77441 0.95861 0.96346 0.92274 0.82412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.17 36.01 0.37 -0.31 16 2 C 0.13 1.20 6.78 -82.59 -0.56 0.64 16 3 C -0.18 -1.45 9.74 -39.44 -0.38 -1.83 16 4 C -0.05 -0.47 9.86 -39.27 -0.39 -0.86 16 5 C -0.16 -1.63 5.27 -104.48 -0.55 -2.18 16 6 C 0.19 2.26 5.82 -5.20 -0.03 2.23 16 7 N -0.75 -10.65 5.55 -66.42 -0.37 -11.02 16 8 C 0.70 13.62 8.57 -86.92 -0.74 12.87 16 9 O -0.60 -14.17 16.34 5.29 0.09 -14.09 16 10 N -0.72 -14.92 5.55 -66.41 -0.37 -15.29 16 11 C 0.24 5.95 4.50 -5.19 -0.02 5.93 16 12 C -0.54 -15.00 9.83 -34.44 -0.34 -15.34 16 13 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 14 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 15 N -0.89 -26.68 13.96 55.43 0.77 -25.91 16 16 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 20 C 0.12 1.31 10.86 -17.55 -0.19 1.12 16 21 N -0.49 -5.48 10.27 -9.47 -0.10 -5.58 16 22 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 25 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 26 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 28 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 29 H 0.39 4.70 8.48 -40.82 -0.35 4.35 16 30 H 0.39 7.14 8.34 -40.82 -0.34 6.80 16 31 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 32 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.16 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 299.23 15.07 4.51 4.51 Total: -1.00 -33.75 299.23 -7.48 -41.23 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -4.41 Total: 4.86 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.94 Total: 4.36 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: -0.06 Total: -57.80 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.09 Total: -14.09 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -33.75 -7.48 -41.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243320323.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.431 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds