Wall clock time and date at job start Mon Mar 30 2020 04:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.31872 * 118.95419 * 2 1 4 4 C 1.32153 * 120.96715 * 180.02562 * 3 2 1 5 5 C 1.39952 * 118.92429 * 359.97438 * 4 3 2 6 6 C 1.47828 * 120.93793 * 180.02562 * 5 4 3 7 7 O 1.21552 * 119.99903 * 19.69949 * 6 5 4 8 8 N 1.34772 * 120.00163 * 199.69606 * 6 5 4 9 9 C 1.46505 * 119.99902 * 7.04866 * 8 6 5 10 10 C 1.46496 * 120.00329 * 187.04460 * 8 6 5 11 11 H 1.08998 * 109.46899 * 0.02562 * 10 8 6 12 12 C 1.52999 * 109.47219 * 120.00265 * 10 8 6 13 13 C 1.50704 * 109.47077 * 240.00241 * 10 8 6 14 14 H 1.07995 * 119.99939 * 0.02562 * 13 10 8 15 15 C 1.37879 * 119.99729 * 180.02562 * 13 10 8 16 16 N 1.31518 * 120.00095 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99835 * 180.02562 * 15 13 10 18 18 H 1.48505 * 109.47118 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.47211 * 299.99680 * 17 15 13 20 20 H 1.48505 * 109.47146 * 59.99938 * 17 15 13 21 21 C 1.39949 * 118.11895 * 0.27454 * 5 4 3 22 22 N 1.31871 * 118.95438 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.47098 * 89.99722 * 1 2 3 24 24 H 1.08999 * 109.47418 * 210.00262 * 1 2 3 25 25 H 1.09003 * 109.46971 * 329.99929 * 1 2 3 26 26 H 1.07998 * 120.53367 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47096 * 264.70405 * 9 8 6 28 28 H 1.09007 * 109.46810 * 24.69891 * 9 8 6 29 29 H 1.09000 * 109.47440 * 144.70034 * 9 8 6 30 30 H 1.09000 * 109.47131 * 299.99942 * 12 10 8 31 31 H 1.08998 * 109.47001 * 60.00287 * 12 10 8 32 32 H 1.09002 * 109.47096 * 180.02562 * 12 10 8 33 33 H 0.97003 * 119.99742 * 180.02562 * 16 15 13 34 34 H 1.08001 * 120.53416 * 179.70385 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1453 1.1539 0.0000 4 6 3.4660 1.2003 -0.0005 5 6 4.1855 -0.0001 -0.0005 6 6 5.6638 -0.0001 -0.0005 7 8 6.2715 0.9909 0.3544 8 7 6.3377 -1.0990 -0.3938 9 6 5.6135 -2.2365 -0.9664 10 6 7.7943 -1.1560 -0.2490 11 1 8.1522 -0.2258 0.1924 12 6 8.1711 -2.3287 0.6586 13 6 8.4268 -1.3458 -1.6036 14 1 7.8059 -1.4164 -2.4844 15 6 9.7983 -1.4292 -1.7185 16 7 10.5545 -1.3427 -0.6459 17 14 10.5823 -1.6637 -3.3977 18 1 12.0590 -1.7216 -3.2508 19 1 10.0943 -2.9306 -3.9993 20 1 10.2172 -0.5248 -4.2779 21 6 3.4659 -1.2004 -0.0059 22 7 2.1453 -1.1539 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 3.9817 2.1492 -0.0001 27 1 5.4069 -2.9668 -0.1840 28 1 4.6739 -1.8897 -1.3968 29 1 6.2205 -2.6994 -1.7445 30 1 7.7137 -2.1914 1.6384 31 1 7.8132 -3.2590 0.2175 32 1 9.2549 -2.3708 0.7667 33 1 11.5194 -1.4011 -0.7268 34 1 3.9816 -2.1493 -0.0109 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259642553.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:23 Heat of formation + Delta-G solvation = 33.409061 kcal Electronic energy + Delta-G solvation = -18033.971252 eV Core-core repulsion = 15161.169625 eV Total energy + Delta-G solvation = -2872.801627 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24483 -38.95183 -35.65565 -34.01256 -33.47172 -32.56282 -29.87012 -28.38809 -26.78688 -25.30088 -24.42922 -23.48289 -21.34474 -19.07541 -17.88840 -16.87264 -16.62923 -16.20786 -15.51908 -15.22914 -14.42600 -14.36060 -13.86114 -13.42574 -13.22281 -12.78425 -12.63891 -12.55150 -12.45135 -11.73718 -11.53574 -11.35749 -11.12898 -10.90231 -10.81697 -10.72374 -10.35328 -10.22539 -9.45870 -9.28906 -9.27152 -9.16216 -8.49468 -7.77407 -6.13573 -4.22128 0.54806 1.03573 3.18870 3.24762 3.30231 3.31875 3.64153 3.83465 3.92931 4.06832 4.34371 4.55283 4.80595 5.05159 5.12644 5.18296 5.33418 5.35760 5.46014 5.71971 5.73197 5.84438 6.20334 6.31648 6.65035 6.72118 6.86325 6.95024 7.25369 7.41060 7.62742 7.91329 7.98873 8.09361 8.33836 8.69249 8.86003 9.44336 10.91796 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.040554 B = 0.005222 C = 0.005172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.278462 B = 5360.467575 C = 5412.039063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.320 3.680 3 N -0.525 5.525 4 C 0.203 3.797 5 C -0.234 4.234 6 C 0.554 3.446 7 O -0.539 6.539 8 N -0.582 5.582 9 C 0.066 3.934 10 C 0.258 3.742 11 H 0.066 0.934 12 C -0.147 4.147 13 C -0.529 4.529 14 H 0.060 0.940 15 C 0.067 3.933 16 N -0.887 5.887 17 Si 0.900 3.100 18 H -0.286 1.286 19 H -0.276 1.276 20 H -0.277 1.277 21 C 0.159 3.841 22 N -0.525 5.525 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.179 0.821 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.012 0.988 31 H 0.031 0.969 32 H 0.096 0.904 33 H 0.265 0.735 34 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.034 -1.594 0.625 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 N -0.240 5.240 4 C 0.036 3.964 5 C -0.242 4.242 6 C 0.339 3.661 7 O -0.418 6.418 8 N -0.312 5.312 9 C -0.078 4.078 10 C 0.159 3.841 11 H 0.084 0.916 12 C -0.206 4.206 13 C -0.568 4.568 14 H 0.078 0.922 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.727 3.273 18 H -0.211 1.211 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.006 4.006 22 N -0.240 5.240 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.196 0.804 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.031 0.969 31 H 0.050 0.950 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -15.480 -1.096 0.873 15.543 hybrid contribution 1.492 -0.244 -0.976 1.800 sum -13.987 -1.340 -0.103 14.052 Atomic orbital electron populations 1.20584 0.85683 1.04175 1.03904 1.23481 0.98386 0.83856 0.88954 1.68362 1.09842 1.30040 1.15712 1.23466 0.88678 0.98508 0.85715 1.22079 0.97474 0.96680 1.07960 1.17771 0.85131 0.84027 0.79171 1.90754 1.69075 1.32542 1.49445 1.48179 1.10322 1.14223 1.58494 1.22224 0.96962 0.89671 0.98936 1.19035 0.71854 0.97119 0.96119 0.91634 1.22108 1.04660 0.98003 0.95822 1.21237 0.91730 1.51330 0.92478 0.92212 1.24882 0.97006 0.94748 0.96994 1.69862 1.05192 1.49365 1.28029 0.86531 0.78148 0.78701 0.83874 1.21108 1.20190 1.20218 1.24722 0.89415 0.99580 0.86921 1.68380 1.09941 1.30009 1.15624 0.89516 0.89552 0.89592 0.80362 0.92652 0.91823 0.89448 0.96900 0.94966 0.88582 0.92515 0.78839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.31 36.00 0.37 -0.38 16 2 C 0.32 4.26 7.64 -157.07 -1.20 3.06 16 3 N -0.53 -7.66 10.32 -10.39 -0.11 -7.77 16 4 C 0.20 3.14 10.88 -16.77 -0.18 2.96 16 5 C -0.23 -3.87 5.60 -104.69 -0.59 -4.46 16 6 C 0.55 11.34 7.55 -12.34 -0.09 11.25 16 7 O -0.54 -12.98 15.96 5.32 0.08 -12.90 16 8 N -0.58 -11.96 2.75 -176.38 -0.49 -12.45 16 9 C 0.07 1.03 7.70 59.85 0.46 1.49 16 10 C 0.26 6.37 2.63 -69.08 -0.18 6.19 16 11 H 0.07 1.88 6.92 -51.93 -0.36 1.52 16 12 C -0.15 -3.38 8.97 37.16 0.33 -3.04 16 13 C -0.53 -13.88 8.03 -34.44 -0.28 -14.16 16 14 H 0.06 1.54 7.25 -52.49 -0.38 1.16 16 15 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 16 N -0.89 -24.48 11.32 55.43 0.63 -23.85 16 17 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.16 2.29 8.91 -16.78 -0.15 2.14 16 22 N -0.52 -7.36 10.31 -10.40 -0.11 -7.47 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.18 2.59 7.86 -52.49 -0.41 2.17 16 27 H 0.06 0.74 7.16 -51.93 -0.37 0.36 16 28 H 0.06 0.87 5.06 -51.92 -0.26 0.61 16 29 H 0.09 1.46 6.96 -51.93 -0.36 1.09 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 32 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.20 2.43 4.15 -52.49 -0.22 2.21 16 LS Contribution 285.04 15.07 4.30 4.30 Total: -1.00 -30.75 285.04 -6.22 -36.97 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -3.91 Total: 0.87 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.60 Total: 6.71 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.07 Total: -51.54 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.75 -6.22 -36.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259642553.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.378 kcal (2) G-P(sol) polarization free energy of solvation -30.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds