Wall clock time and date at job start Mon Mar 30 2020 04:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38803 * 120.42421 * 2 1 4 4 C 1.39497 * 118.26364 * 179.72074 * 3 2 1 5 5 C 1.48456 * 120.54909 * 179.97438 * 4 3 2 6 6 O 1.21479 * 120.00070 * 352.94077 * 5 4 3 7 7 N 1.34776 * 119.99607 * 172.93925 * 5 4 3 8 8 C 1.46494 * 120.00378 * 2.34377 * 7 5 4 9 9 C 1.46504 * 119.99630 * 182.34316 * 7 5 4 10 10 C 1.53006 * 109.46905 * 90.00486 * 9 7 5 11 11 C 1.50694 * 109.46899 * 180.02562 * 10 9 7 12 12 H 1.07997 * 120.00448 * 359.97438 * 11 10 9 13 13 C 1.37881 * 120.00105 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00401 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99597 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47101 * 90.00025 * 15 13 11 17 17 H 1.48504 * 109.46727 * 209.99684 * 15 13 11 18 18 H 1.48491 * 109.47246 * 329.99759 * 15 13 11 19 19 N 1.33109 * 118.89925 * 0.02562 * 4 3 2 20 20 C 1.31552 * 120.73584 * 359.97438 * 19 4 3 21 21 N 1.31914 * 121.91909 * 0.02562 * 20 19 4 22 22 H 1.09006 * 109.46844 * 90.00430 * 1 2 3 23 23 H 1.08998 * 109.47054 * 210.00261 * 1 2 3 24 24 H 1.08991 * 109.47437 * 330.00441 * 1 2 3 25 25 H 1.08001 * 120.87231 * 359.69758 * 3 2 1 26 26 H 1.09002 * 109.47194 * 83.84333 * 8 7 5 27 27 H 1.09001 * 109.47712 * 203.85069 * 8 7 5 28 28 H 1.09003 * 109.47425 * 323.84802 * 8 7 5 29 29 H 1.08997 * 109.46910 * 210.00019 * 9 7 5 30 30 H 1.08997 * 109.47364 * 330.00081 * 9 7 5 31 31 H 1.09006 * 109.46869 * 299.99270 * 10 9 7 32 32 H 1.08997 * 109.47440 * 59.99641 * 10 9 7 33 33 H 0.96999 * 120.00274 * 179.97438 * 14 13 11 34 34 H 1.07998 * 119.03951 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1443 0.0060 5 6 4.4061 2.3935 0.0057 6 8 3.8564 3.4683 -0.1290 7 7 5.7443 2.3349 0.1550 8 6 6.4128 1.0361 0.2659 9 6 6.5303 3.5701 0.2062 10 6 6.6460 4.0411 1.6573 11 6 7.4540 5.3121 1.7100 12 1 7.8462 5.7408 0.7996 13 6 7.6926 5.9277 2.9204 14 7 8.3982 7.0365 2.9665 15 14 7.0136 5.1866 4.4950 16 1 8.0052 4.2385 5.0636 17 1 6.7448 6.2689 5.4756 18 1 5.7513 4.4634 4.1975 19 7 4.2027 -0.0444 0.0109 20 6 3.4954 -1.1536 0.0107 21 7 2.1764 -1.1397 0.0051 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3634 0.8899 0.5137 25 1 1.6912 2.1442 -0.0049 26 1 6.5933 0.6339 -0.7310 27 1 7.3631 1.1597 0.7854 28 1 5.7795 0.3481 0.8260 29 1 7.5262 3.3839 -0.1958 30 1 6.0370 4.3397 -0.3874 31 1 5.6500 4.2274 2.0593 32 1 7.1394 3.2716 2.2510 33 1 8.5657 7.4698 3.8180 34 1 4.0097 -2.1033 0.0152 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259739016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:40 Heat of formation + Delta-G solvation = 24.861143 kcal Electronic energy + Delta-G solvation = -17685.760620 eV Core-core repulsion = 14812.588327 eV Total energy + Delta-G solvation = -2873.172292 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.44361 -39.23981 -35.71193 -34.73447 -33.06862 -32.68760 -30.45685 -28.93524 -26.57589 -26.05482 -24.22350 -23.39620 -21.05701 -19.51446 -18.00772 -17.01161 -16.84335 -15.93673 -15.66180 -15.59739 -15.13152 -14.74946 -14.09595 -13.58983 -13.40175 -13.26573 -12.93920 -12.76857 -12.68930 -12.54409 -12.06951 -11.61904 -11.02172 -10.93411 -10.74208 -10.42938 -10.19815 -10.02397 -9.83478 -9.79161 -9.29463 -9.08991 -8.55451 -8.18548 -6.06239 -4.04960 0.39067 0.67923 2.84530 3.11354 3.29630 3.37519 3.43291 3.66934 3.74424 3.81644 4.26007 4.44446 4.66437 4.74423 5.06294 5.19090 5.27978 5.29224 5.46161 5.55751 5.59995 5.82832 5.96046 6.01639 6.31384 6.35841 6.58950 6.63130 6.75751 7.18572 7.32975 7.64936 7.75316 7.77016 8.31272 8.48970 8.97051 9.55754 11.06910 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032404 B = 0.005080 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.876412 B = 5510.442329 C = 5690.683123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.174 3.826 3 C -0.171 4.171 4 C 0.143 3.857 5 C 0.555 3.445 6 O -0.524 6.524 7 N -0.587 5.587 8 C 0.074 3.926 9 C 0.122 3.878 10 C -0.023 4.023 11 C -0.520 4.520 12 H 0.075 0.925 13 C 0.071 3.929 14 N -0.901 5.901 15 Si 0.879 3.121 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.267 1.267 19 N -0.493 5.493 20 C 0.290 3.710 21 N -0.514 5.514 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.160 0.840 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.020 0.980 32 H 0.013 0.987 33 H 0.264 0.736 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.353 -17.835 -5.915 22.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.027 3.973 3 C -0.194 4.194 4 C -0.004 4.004 5 C 0.340 3.660 6 O -0.400 6.400 7 N -0.317 5.317 8 C -0.069 4.069 9 C 0.002 3.998 10 C -0.061 4.061 11 C -0.558 4.558 12 H 0.093 0.907 13 C -0.131 4.131 14 N -0.540 5.540 15 Si 0.706 3.294 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.192 1.192 19 N -0.211 5.211 20 C 0.002 3.998 21 N -0.230 5.230 22 H 0.106 0.894 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.177 0.823 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.039 0.961 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.040 -17.933 -5.867 22.382 hybrid contribution -0.478 0.366 0.952 1.126 sum -12.518 -17.568 -4.915 22.124 Atomic orbital electron populations 1.20811 0.87295 1.04365 1.03921 1.21822 0.97881 0.87772 0.89845 1.22831 0.94713 1.01400 1.00458 1.21910 0.92228 0.92833 0.93406 1.17820 0.82596 0.86709 0.78901 1.90807 1.70740 1.28437 1.49986 1.48042 1.05783 1.09386 1.68517 1.22330 0.98247 0.84282 1.02041 1.21809 0.93973 0.83503 1.00527 1.19878 0.97479 0.96875 0.91884 1.20956 1.32768 1.06885 0.95229 0.90725 1.24960 0.94535 0.94616 0.98993 1.69900 1.39622 1.18343 1.26089 0.86789 0.80126 0.79059 0.83408 1.20252 1.21236 1.19159 1.68924 1.40127 0.98625 1.13401 1.25118 0.86655 0.97198 0.90855 1.68185 1.10643 1.30483 1.13686 0.89426 0.89727 0.89743 0.82250 0.92795 0.91633 0.88236 0.90643 0.90052 0.96141 0.96910 0.92644 0.78212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.22 36.01 0.37 -0.36 16 2 C 0.17 1.85 6.83 -82.24 -0.56 1.29 16 3 C -0.17 -2.16 9.41 -38.90 -0.37 -2.53 16 4 C 0.14 2.12 6.65 -82.63 -0.55 1.57 16 5 C 0.56 10.22 7.68 -12.05 -0.09 10.12 16 6 O -0.52 -11.22 16.01 5.38 0.09 -11.13 16 7 N -0.59 -10.60 2.87 -182.46 -0.52 -11.12 16 8 C 0.07 1.04 9.35 59.84 0.56 1.60 16 9 C 0.12 2.54 5.34 -4.04 -0.02 2.52 16 10 C -0.02 -0.57 4.37 -27.88 -0.12 -0.69 16 11 C -0.52 -15.01 9.66 -34.44 -0.33 -15.35 16 12 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 13 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 15 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 18 H -0.27 -6.69 6.54 56.52 0.37 -6.32 16 19 N -0.49 -6.31 6.23 -11.14 -0.07 -6.37 16 20 C 0.29 3.04 12.27 -92.26 -1.13 1.91 16 21 N -0.51 -5.72 10.36 -10.81 -0.11 -5.83 16 22 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 25 H 0.16 1.89 7.75 -52.49 -0.41 1.49 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.90 8.03 -51.93 -0.42 0.48 16 28 H 0.10 1.34 5.26 -51.94 -0.27 1.07 16 29 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 30 H 0.08 1.80 7.39 -51.93 -0.38 1.42 16 31 H 0.02 0.54 7.20 -51.93 -0.37 0.16 16 32 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.20 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 293.03 15.07 4.42 4.42 Total: -1.00 -34.11 293.03 -6.81 -40.92 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -4.36 Total: -3.34 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.35 Total: 2.08 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.07 Total: -50.55 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -34.11 -6.81 -40.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259739016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.786 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds