Wall clock time and date at job start Mon Mar 30 2020 04:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38801 * 120.42886 * 2 1 4 4 C 1.39497 * 118.26522 * 179.97438 * 3 2 1 5 5 C 1.48446 * 120.55257 * 179.97438 * 4 3 2 6 6 O 1.21481 * 119.99700 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00165 * 180.02562 * 5 4 3 8 8 C 1.46506 * 120.00033 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.46566 * 324.99334 * 8 7 5 10 10 C 1.52997 * 109.47289 * 84.99600 * 8 7 5 11 11 C 1.50697 * 109.47015 * 205.00057 * 8 7 5 12 12 H 1.07998 * 120.00039 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99815 * 179.97438 * 11 8 7 14 14 N 1.31508 * 119.99915 * 359.97438 * 13 11 8 15 15 Si 1.86805 * 119.99777 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47152 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47204 * 119.99883 * 15 13 11 18 18 H 1.48496 * 109.47191 * 240.00215 * 15 13 11 19 19 N 1.33105 * 118.89674 * 0.25053 * 4 3 2 20 20 C 1.31556 * 120.74158 * 359.49389 * 19 4 3 21 21 C 1.50695 * 119.04549 * 180.23976 * 20 19 4 22 22 N 1.31914 * 121.91378 * 0.51940 * 20 19 4 23 23 H 1.08998 * 109.46596 * 89.99450 * 1 2 3 24 24 H 1.08999 * 109.47022 * 209.99800 * 1 2 3 25 25 H 1.08993 * 109.46614 * 329.99504 * 1 2 3 26 26 H 1.08001 * 120.86845 * 359.96595 * 3 2 1 27 27 H 0.96992 * 119.99904 * 359.97438 * 7 5 4 28 28 H 1.09002 * 109.47153 * 179.97438 * 10 8 7 29 29 H 1.09001 * 109.46832 * 60.00146 * 10 8 7 30 30 H 1.09004 * 109.47261 * 300.00128 * 10 8 7 31 31 H 0.97001 * 119.99839 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.46981 * 270.27695 * 21 20 19 33 33 H 1.09005 * 109.46909 * 30.27278 * 21 20 19 34 34 H 1.09000 * 109.47314 * 150.26891 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2101 1.1968 0.0000 4 6 3.6040 1.1442 0.0005 5 6 4.4064 2.3931 0.0000 6 8 3.8494 3.4727 -0.0014 7 7 5.7526 2.3293 0.0000 8 6 6.5444 3.5619 -0.0011 9 1 6.0325 4.3220 -0.5913 10 6 6.7143 4.0603 1.4354 11 6 7.8993 3.2881 -0.6013 12 1 8.1461 2.2951 -0.9470 13 6 8.8238 4.3053 -0.7092 14 7 8.5231 5.5145 -0.2887 15 14 10.5036 3.9656 -1.4527 16 1 10.5917 2.5359 -1.8443 17 1 10.6963 4.8205 -2.6515 18 1 11.5583 4.2703 -0.4527 19 7 4.2028 -0.0446 -0.0040 20 6 3.4955 -1.1538 0.0010 21 6 4.2129 -2.4790 0.0010 22 7 2.1764 -1.1398 0.0005 23 1 -0.3632 0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3632 0.8899 0.5139 26 1 1.6914 2.1441 -0.0006 27 1 6.1972 1.4673 0.0008 28 1 7.3038 4.9772 1.4346 29 1 7.2262 3.3002 2.0256 30 1 5.7342 4.2584 1.8696 31 1 9.1734 6.2302 -0.3650 32 1 4.3864 -2.7983 -1.0267 33 1 5.1684 -2.3749 0.5152 34 1 3.6031 -3.2224 0.5145 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259761179.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:26 Heat of formation + Delta-G solvation = -22.281130 kcal Electronic energy + Delta-G solvation = -17609.382624 eV Core-core repulsion = 14734.166089 eV Total energy + Delta-G solvation = -2875.216535 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.37427 -40.43137 -36.88625 -35.74256 -34.60246 -34.22308 -30.96632 -30.14564 -29.18232 -27.39415 -26.05310 -23.23714 -22.93533 -21.40731 -19.69698 -18.66158 -17.72110 -17.09825 -16.74307 -16.57871 -16.23957 -15.72994 -15.50438 -14.82263 -14.46613 -14.25656 -14.09410 -13.80278 -13.33199 -13.23145 -13.09748 -13.03358 -12.90952 -12.78730 -12.32666 -12.15377 -12.04409 -11.60314 -11.42334 -11.15524 -10.64774 -10.50121 -10.41069 -9.90514 -8.20675 -6.38256 -0.62680 -0.17326 1.44089 1.44863 1.57458 1.68608 2.07501 2.42084 2.67546 2.81347 2.89173 3.09966 3.49204 3.74816 3.88486 4.33039 4.35936 4.68266 4.69395 4.71423 4.75587 4.86275 4.86733 4.92101 5.01408 5.16313 5.33035 5.39708 5.49448 5.60131 5.73893 5.85984 6.02836 6.65733 6.70271 6.93267 7.17439 7.36057 8.86146 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.032376 B = 0.005136 C = 0.004608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.618682 B = 5450.783878 C = 6075.263709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.183 3.817 3 C -0.186 4.186 4 C 0.126 3.874 5 C 0.550 3.450 6 O -0.574 6.574 7 N -0.678 5.678 8 C 0.266 3.734 9 H 0.008 0.992 10 C -0.134 4.134 11 C -0.550 4.550 12 H 0.070 0.930 13 C 0.018 3.982 14 N -0.915 5.915 15 Si 0.975 3.025 16 H -0.262 1.262 17 H -0.281 1.281 18 H -0.276 1.276 19 N -0.517 5.517 20 C 0.309 3.691 21 C -0.081 4.081 22 N -0.515 5.515 23 H 0.104 0.896 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.165 0.835 27 H 0.410 0.590 28 H 0.073 0.927 29 H 0.039 0.961 30 H 0.015 0.985 31 H 0.267 0.733 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.859 -14.830 0.896 19.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.035 3.965 3 C -0.209 4.209 4 C -0.020 4.020 5 C 0.334 3.666 6 O -0.454 6.454 7 N -0.325 5.325 8 C 0.164 3.836 9 H 0.025 0.975 10 C -0.192 4.192 11 C -0.588 4.588 12 H 0.088 0.912 13 C -0.183 4.183 14 N -0.553 5.553 15 Si 0.799 3.201 16 H -0.186 1.186 17 H -0.207 1.207 18 H -0.202 1.202 19 N -0.235 5.235 20 C 0.042 3.958 21 C -0.139 4.139 22 N -0.232 5.232 23 H 0.123 0.877 24 H 0.114 0.886 25 H 0.119 0.881 26 H 0.182 0.818 27 H 0.245 0.755 28 H 0.091 0.909 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.111 0.889 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.619 -14.700 0.911 18.759 hybrid contribution 0.757 0.976 -0.316 1.275 sum -10.862 -13.724 0.594 17.512 Atomic orbital electron populations 1.20954 0.83855 1.05680 1.05324 1.22489 0.99736 0.86555 0.87748 1.22959 0.93800 1.02532 1.01621 1.21600 0.92894 0.91917 0.95560 1.18318 0.83203 0.87450 0.77629 1.90712 1.71978 1.29843 1.52885 1.46263 1.05010 1.11891 1.69366 1.18559 0.89608 0.81565 0.93893 0.97454 1.21904 0.98201 1.02174 0.96953 1.21508 0.98296 0.97111 1.41849 0.91174 1.25776 1.02711 0.94454 0.95310 1.70038 1.36733 1.01852 1.46677 0.85257 0.78325 0.78647 0.77874 1.18626 1.20712 1.20161 1.68198 1.42322 0.98278 1.14737 1.24024 0.86987 0.95267 0.89544 1.20730 1.00202 0.87747 1.05223 1.68196 1.09650 1.30630 1.14721 0.87745 0.88562 0.88118 0.81779 0.75452 0.90859 0.94160 0.96596 0.92341 0.88092 0.88917 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.22 71.24 0.73 -0.62 16 2 C 0.18 4.30 6.83 42.64 0.29 4.59 16 3 C -0.19 -5.42 9.41 22.71 0.21 -5.20 16 4 C 0.13 4.52 6.79 41.98 0.29 4.80 16 5 C 0.55 24.29 7.79 86.96 0.68 24.97 16 6 O -0.57 -28.70 16.09 -3.65 -0.06 -28.76 16 7 N -0.68 -31.08 5.06 -448.40 -2.27 -33.35 16 8 C 0.27 14.29 2.56 44.24 0.11 14.41 16 9 H 0.01 0.47 7.58 -2.39 -0.02 0.45 16 10 C -0.13 -6.91 9.26 71.98 0.67 -6.25 16 11 C -0.55 -29.90 8.73 25.60 0.22 -29.68 16 12 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 13 C 0.02 0.97 5.30 84.66 0.45 1.42 16 14 N -0.91 -52.42 11.32 21.45 0.24 -52.18 16 15 Si 0.97 42.37 29.54 68.60 2.03 44.40 16 16 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 17 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 19 N -0.52 -16.86 9.60 -177.09 -1.70 -18.56 16 20 C 0.31 8.25 7.64 138.78 1.06 9.31 16 21 C -0.08 -1.43 10.31 71.23 0.73 -0.69 16 22 N -0.52 -13.01 10.25 -176.04 -1.81 -14.81 16 23 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.10 1.04 8.10 -2.39 -0.02 1.02 16 26 H 0.16 4.47 7.74 -2.91 -0.02 4.44 16 27 H 0.41 17.16 7.92 -92.71 -0.73 16.43 16 28 H 0.07 4.09 6.07 -2.39 -0.01 4.07 16 29 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.01 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -68.11 298.47 2.26 -65.85 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.38 Total: 20.35 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 5.44 Total: 17.06 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -5.53 Total: -118.90 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.06 Total: -28.76 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -68.11 2.26 -65.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761179.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.569 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds