Wall clock time and date at job start Mon Mar 30 2020 04:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32069 * 118.75199 * 2 1 4 4 C 1.32030 * 121.30731 * 180.02562 * 3 2 1 5 5 C 1.40883 * 118.85136 * 359.97438 * 4 3 2 6 6 C 1.41070 * 121.10047 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00488 * 153.14498 * 6 5 4 8 8 C 1.39957 * 120.00121 * 333.15677 * 6 5 4 9 9 N 1.30866 * 119.99527 * 332.67224 * 8 6 5 10 10 Si 1.86795 * 120.00542 * 152.66966 * 8 6 5 11 11 H 1.48496 * 109.47587 * 180.02562 * 10 8 6 12 12 H 1.48508 * 109.47078 * 300.00322 * 10 8 6 13 13 H 1.48506 * 109.46965 * 59.99865 * 10 8 6 14 14 C 1.42116 * 117.80674 * 0.25793 * 5 4 3 15 15 N 1.37786 * 120.71110 * 179.74811 * 14 5 4 16 16 C 1.47013 * 110.99762 * 288.25735 * 15 14 5 17 17 C 1.53104 * 109.25675 * 177.60320 * 16 15 14 18 18 O 1.43016 * 109.25526 * 56.85292 * 17 16 15 19 19 C 1.43018 * 113.73752 * 301.32681 * 18 17 16 20 20 C 1.47010 * 111.00067 * 164.62183 * 15 14 5 21 21 N 1.31802 * 118.75331 * 179.97438 * 2 1 3 22 22 H 1.08998 * 109.47313 * 90.00262 * 1 2 3 23 23 H 1.09005 * 109.47257 * 209.99775 * 1 2 3 24 24 H 1.08994 * 109.47287 * 329.99893 * 1 2 3 25 25 H 1.08003 * 120.57173 * 180.02562 * 4 3 2 26 26 H 0.96996 * 120.00314 * 353.98381 * 9 8 6 27 27 H 1.08996 * 109.50758 * 297.54428 * 16 15 14 28 28 H 1.09006 * 109.50601 * 57.67265 * 16 15 14 29 29 H 1.08998 * 109.50378 * 296.91405 * 17 16 15 30 30 H 1.08999 * 109.54213 * 176.80660 * 17 16 15 31 31 H 1.09004 * 109.50387 * 298.73744 * 19 18 17 32 32 H 1.08992 * 109.54466 * 178.63013 * 19 18 17 33 33 H 1.09004 * 109.50649 * 302.32735 * 20 15 14 34 34 H 1.09002 * 109.50851 * 62.45754 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1422 1.1579 0.0000 4 6 3.4612 1.2167 -0.0005 5 6 4.1954 0.0143 -0.0005 6 6 5.6061 0.0218 -0.0016 7 1 6.1509 -0.8095 0.4209 8 6 6.2997 1.1068 -0.5499 9 7 5.7503 1.8232 -1.4972 10 14 8.0095 1.5322 0.0704 11 1 8.5236 2.7144 -0.6666 12 1 7.9466 1.8429 1.5213 13 1 8.9174 0.3778 -0.1496 14 6 3.4680 -1.2066 -0.0056 15 7 4.1255 -2.4174 -0.0111 16 6 4.7544 -2.6695 -1.3158 17 6 5.5218 -3.9930 -1.2591 18 8 4.6268 -5.0413 -0.8780 19 6 3.9970 -4.8286 0.3883 20 6 3.2141 -3.5135 0.3484 21 7 2.1410 -1.1555 0.0005 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8899 0.5138 25 1 3.9685 2.1702 -0.0001 26 1 4.9014 1.5518 -1.8802 27 1 3.9849 -2.7275 -2.0856 28 1 5.4441 -1.8586 -1.5502 29 1 6.3257 -3.9165 -0.5270 30 1 5.9428 -4.2127 -2.2403 31 1 4.7566 -4.7765 1.1684 32 1 3.3147 -5.6520 0.5991 33 1 2.7794 -3.3187 1.3288 34 1 2.4200 -3.5851 -0.3948 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259761475.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:53 Heat of formation + Delta-G solvation = -23.377733 kcal Electronic energy + Delta-G solvation = -18695.479364 eV Core-core repulsion = 15820.215277 eV Total energy + Delta-G solvation = -2875.264087 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.70212 -40.11574 -37.04919 -36.57423 -33.42075 -32.65884 -32.21458 -29.97125 -28.30829 -26.29711 -25.10811 -24.00158 -22.77011 -21.47326 -20.01928 -18.55101 -18.07053 -17.06428 -16.34974 -16.23276 -16.07922 -15.95828 -15.56695 -15.41598 -15.15988 -14.52802 -14.17989 -13.82838 -13.45350 -13.14594 -13.11675 -12.87072 -12.53826 -12.44622 -12.35186 -11.96127 -11.74575 -11.47831 -11.33252 -11.00440 -10.74238 -10.17756 -9.93002 -9.50046 -9.21680 -6.56041 0.53177 0.55492 1.53336 1.63325 1.82730 2.27507 2.54996 2.67199 2.90765 3.35691 3.63111 3.73401 3.91557 4.05478 4.12446 4.19349 4.28353 4.43520 4.59102 4.67908 4.69122 4.76550 4.80050 4.81238 4.86457 4.98455 4.99694 5.15179 5.44843 5.75004 5.76584 5.82232 6.03637 6.11252 6.50621 6.58898 6.80610 7.72995 7.81903 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.010927 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.199427 B = 2561.728473 C = 4060.384576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.141 3.859 3 N -0.511 5.511 4 C 0.002 3.998 5 C -0.015 4.015 6 C -0.478 4.478 7 H 0.095 0.905 8 C 0.008 3.992 9 N -0.791 5.791 10 Si 1.116 2.884 11 H -0.273 1.273 12 H -0.265 1.265 13 H -0.248 1.248 14 C 0.205 3.795 15 N -0.457 5.457 16 C 0.030 3.970 17 C 0.075 3.925 18 O -0.397 6.397 19 C 0.070 3.930 20 C 0.036 3.964 21 N -0.526 5.526 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.134 0.866 26 H 0.281 0.719 27 H 0.018 0.982 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.123 0.877 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.164 -8.192 1.650 8.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.123 4.123 3 N -0.225 5.225 4 C -0.167 4.167 5 C -0.023 4.023 6 C -0.506 4.506 7 H 0.113 0.887 8 C -0.211 4.211 9 N -0.411 5.411 10 Si 0.932 3.068 11 H -0.197 1.197 12 H -0.189 1.189 13 H -0.172 1.172 14 C -0.040 4.040 15 N -0.178 5.178 16 C -0.097 4.097 17 C -0.002 4.002 18 O -0.316 6.316 19 C -0.007 4.007 20 C -0.092 4.092 21 N -0.244 5.244 22 H 0.086 0.914 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.152 0.848 26 H 0.092 0.908 27 H 0.036 0.964 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.140 0.860 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.093 0.907 34 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.623 -7.242 1.669 7.881 hybrid contribution -1.314 -0.348 -0.341 1.402 sum 1.309 -7.589 1.328 7.815 Atomic orbital electron populations 1.20097 0.85306 1.02730 1.02287 1.22660 0.98129 0.83038 1.08449 1.67513 1.11153 1.30998 1.12811 1.22821 0.88957 0.97464 1.07462 1.19068 0.96272 0.91636 0.95372 1.20574 0.90474 1.06795 1.32797 0.88742 1.28641 1.09389 0.90970 0.92128 1.70632 1.17888 1.36128 1.16486 0.83013 0.68623 0.78209 0.76977 1.19740 1.18936 1.17179 1.20021 0.87468 0.91208 1.05267 1.59118 1.30517 0.99647 1.28503 1.22751 0.98548 1.00609 0.87829 1.22734 0.91129 0.83748 1.02607 1.87918 1.60876 1.44715 1.38062 1.22825 0.96611 0.95668 0.85597 1.22571 0.94275 0.91132 1.01222 1.67588 1.10005 1.31491 1.15277 0.91410 0.90543 0.90671 0.84841 0.90756 0.96360 0.89603 0.91171 0.85962 0.91536 0.85714 0.90681 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.68 10.30 71.23 0.73 -0.95 16 2 C 0.14 6.82 7.64 138.66 1.06 7.87 16 3 N -0.51 -26.49 10.29 -186.03 -1.91 -28.41 16 4 C 0.00 0.11 9.34 85.31 0.80 0.91 16 5 C -0.01 -0.76 5.17 -20.97 -0.11 -0.87 16 6 C -0.48 -23.16 6.90 23.38 0.16 -23.00 16 7 H 0.09 4.45 7.79 -2.91 -0.02 4.43 16 8 C 0.01 0.36 4.92 85.25 0.42 0.78 16 9 N -0.79 -39.31 12.43 21.83 0.27 -39.04 16 10 Si 1.12 38.47 30.01 68.60 2.06 40.53 16 11 H -0.27 -9.42 7.11 99.48 0.71 -8.72 16 12 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 13 H -0.25 -7.61 7.11 99.48 0.71 -6.90 16 14 C 0.20 10.08 6.09 134.10 0.82 10.90 16 15 N -0.46 -19.19 4.22 -698.62 -2.95 -22.14 16 16 C 0.03 1.14 5.37 86.32 0.46 1.60 16 17 C 0.07 2.20 7.01 72.02 0.50 2.70 16 18 O -0.40 -12.08 10.83 -148.98 -1.61 -13.69 16 19 C 0.07 1.94 7.01 72.02 0.50 2.44 16 20 C 0.04 1.29 4.87 86.32 0.42 1.71 16 21 N -0.53 -25.75 8.85 -183.91 -1.63 -27.38 16 22 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 24 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.13 7.19 6.81 -2.91 -0.02 7.17 16 26 H 0.28 14.93 6.95 -92.71 -0.64 14.28 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 3.58 6.38 -2.38 -0.02 3.56 16 29 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.13 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.07 2.75 8.12 -2.38 -0.02 2.73 16 34 H 0.03 1.38 7.83 -2.39 -0.02 1.36 16 Total: -1.00 -60.15 281.58 1.22 -58.93 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 1.23 Total: 27.11 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 5.77 Total: 4.10 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -6.22 Total: -116.97 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -1.61 Total: -13.69 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.06 Total: 40.53 kcal Total: -60.15 1.22 -58.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259761475.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.548 kcal (2) G-P(sol) polarization free energy of solvation -60.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds