Wall clock time and date at job start Mon Mar 30 2020 03:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38567 * 119.96467 * 2 1 4 4 C 1.38828 * 118.06666 * 180.02562 * 3 2 1 5 5 C 1.39710 * 117.89914 * 0.02562 * 4 3 2 6 6 C 1.48150 * 120.18438 * 179.97438 * 5 4 3 7 7 O 1.21519 * 120.00145 * 352.87467 * 6 5 4 8 8 N 1.34780 * 120.00428 * 172.87742 * 6 5 4 9 9 C 1.46504 * 119.99441 * 2.23486 * 8 6 5 10 10 C 1.46496 * 120.00136 * 182.23815 * 8 6 5 11 11 C 1.52999 * 109.47215 * 90.00264 * 10 8 6 12 12 C 1.50696 * 109.47126 * 179.97438 * 11 10 8 13 13 H 1.08002 * 120.00647 * 359.97438 * 12 11 10 14 14 C 1.37886 * 119.99954 * 179.97438 * 12 11 10 15 15 N 1.31504 * 119.99877 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99906 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47387 * 60.00159 * 16 14 12 18 18 H 1.48495 * 109.47118 * 180.02562 * 16 14 12 19 19 H 1.48510 * 109.47005 * 300.00378 * 16 14 12 20 20 N 1.32784 * 119.63371 * 359.97438 * 5 4 3 21 21 N 1.28352 * 122.03486 * 359.97438 * 20 5 4 22 22 H 1.09003 * 109.46781 * 269.97466 * 1 2 3 23 23 H 1.08994 * 109.47119 * 29.97557 * 1 2 3 24 24 H 1.08998 * 109.47217 * 149.98075 * 1 2 3 25 25 H 1.08000 * 120.96984 * 359.97438 * 3 2 1 26 26 H 1.08004 * 121.04785 * 179.97438 * 4 3 2 27 27 H 1.09003 * 109.47064 * 83.82009 * 9 8 6 28 28 H 1.09002 * 109.46665 * 203.81373 * 9 8 6 29 29 H 1.08992 * 109.47539 * 323.81367 * 9 8 6 30 30 H 1.09005 * 109.47096 * 209.99933 * 10 8 6 31 31 H 1.08991 * 109.47309 * 329.99687 * 10 8 6 32 32 H 1.09005 * 109.46818 * 299.99839 * 11 10 8 33 33 H 1.08991 * 109.47453 * 59.99511 * 11 10 8 34 34 H 0.97007 * 119.99799 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1992 1.2005 0.0000 4 6 3.5867 1.1545 -0.0005 5 6 4.1992 -0.1012 -0.0016 6 6 5.6767 -0.2093 -0.0028 7 8 6.3588 0.7879 -0.1334 8 7 6.2645 -1.4136 0.1409 9 6 5.4426 -2.6215 0.2491 10 6 7.7252 -1.5147 0.1889 11 6 8.1972 -1.3967 1.6395 12 6 9.6997 -1.5014 1.6890 13 1 10.2619 -1.6387 0.7771 14 6 10.3569 -1.4217 2.8985 15 7 9.6725 -1.2550 4.0089 16 14 12.2193 -1.5521 2.9599 17 1 12.8190 -0.4591 2.1532 18 1 12.6774 -1.4375 4.3677 19 1 12.6421 -2.8642 2.4074 20 7 3.4497 -1.1973 -0.0016 21 7 2.1672 -1.1451 -0.0001 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3633 -0.8898 -0.5141 25 1 1.6745 2.1444 -0.0004 26 1 4.1741 2.0608 -0.0010 27 1 5.1731 -2.9682 -0.7486 28 1 6.0063 -3.3995 0.7641 29 1 4.5372 -2.3957 0.8123 30 1 8.0364 -2.4772 -0.2172 31 1 8.1647 -0.7117 -0.4026 32 1 7.8861 -0.4342 2.0456 33 1 7.7578 -2.1998 2.2311 34 1 10.1348 -1.1993 4.8599 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259803296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:58 Heat of formation + Delta-G solvation = 6.433007 kcal Electronic energy + Delta-G solvation = -17575.435848 eV Core-core repulsion = 14701.464451 eV Total energy + Delta-G solvation = -2873.971396 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.37948 -40.57297 -37.16805 -35.47616 -34.83533 -34.15977 -32.07135 -29.47860 -27.97480 -27.00670 -25.79228 -24.37950 -23.21048 -21.13609 -19.11521 -18.58977 -18.23534 -17.07813 -16.88766 -16.69992 -16.49443 -15.76040 -15.55951 -14.78420 -14.57880 -14.36138 -14.26635 -13.98782 -13.76778 -13.42883 -13.33169 -13.13587 -12.81129 -12.62889 -12.19467 -11.91354 -11.85012 -11.48027 -11.34666 -11.03678 -10.80953 -10.65417 -10.59376 -9.64829 -8.23328 -6.36300 -0.63933 -0.30394 1.39551 1.44218 1.50940 1.53422 1.85971 2.40534 2.50223 2.72933 3.10204 3.28304 3.44797 3.61844 3.80666 3.99410 4.27939 4.38847 4.53191 4.56457 4.67701 4.79361 4.80152 4.87606 4.92787 5.02484 5.11876 5.26510 5.34812 5.44718 5.53982 5.78956 6.13854 6.29049 6.77393 6.91879 7.33275 7.45797 8.88982 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.046853 B = 0.004322 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.471903 B = 6476.435016 C = 6569.398568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.082 3.918 3 C -0.100 4.100 4 C -0.074 4.074 5 C 0.002 3.998 6 C 0.556 3.444 7 O -0.571 6.571 8 N -0.592 5.592 9 C 0.078 3.922 10 C 0.129 3.871 11 C 0.024 3.976 12 C -0.545 4.545 13 H 0.068 0.932 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.973 3.027 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.260 1.260 20 N -0.216 5.216 21 N -0.276 5.276 22 H 0.101 0.899 23 H 0.113 0.887 24 H 0.084 0.916 25 H 0.206 0.794 26 H 0.166 0.834 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.063 0.937 32 H -0.023 1.023 33 H -0.002 1.002 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.823 2.885 -8.999 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.061 4.061 3 C -0.129 4.129 4 C -0.103 4.103 5 C -0.144 4.144 6 C 0.342 3.658 7 O -0.450 6.450 8 N -0.322 5.322 9 C -0.064 4.064 10 C 0.008 3.992 11 C -0.014 4.014 12 C -0.584 4.584 13 H 0.086 0.914 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.796 3.204 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.185 1.185 20 N -0.062 5.062 21 N -0.120 5.120 22 H 0.119 0.881 23 H 0.131 0.869 24 H 0.103 0.897 25 H 0.223 0.777 26 H 0.184 0.816 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.111 0.889 31 H 0.081 0.919 32 H -0.005 1.005 33 H 0.017 0.983 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.476 1.726 -8.898 21.482 hybrid contribution 1.323 1.397 0.517 1.992 sum -18.153 3.123 -8.381 20.237 Atomic orbital electron populations 1.20919 0.83806 1.05846 1.05171 1.23814 1.01301 0.89923 0.91108 1.22820 0.92574 1.01870 0.95600 1.22646 0.96753 0.98140 0.92722 1.22649 0.94863 0.93782 1.03064 1.18167 0.86611 0.83535 0.77508 1.90748 1.64786 1.37040 1.52446 1.48075 1.08116 1.07512 1.68466 1.22414 0.95546 0.85230 1.03202 1.21620 0.77101 1.02225 0.98304 1.19200 0.95693 0.94480 0.92008 1.21517 0.92611 1.50435 0.93802 0.91366 1.26041 1.04305 0.94343 0.95106 1.70116 1.38013 1.50521 0.98721 0.85392 0.78368 0.79411 0.77212 1.19326 1.20798 1.18484 1.73581 1.00114 1.25217 1.07281 1.73068 1.00827 1.26743 1.11334 0.88088 0.86854 0.89748 0.77701 0.81631 0.90724 0.91107 0.88412 0.88888 0.91900 1.00479 0.98333 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.19 71.24 0.73 -0.06 16 2 C 0.08 1.44 6.87 42.59 0.29 1.73 16 3 C -0.10 -1.56 9.86 22.49 0.22 -1.34 16 4 C -0.07 -1.82 9.73 22.77 0.22 -1.60 16 5 C 0.00 0.07 6.70 41.99 0.28 0.35 16 6 C 0.56 22.85 7.66 86.88 0.67 23.51 16 7 O -0.57 -27.04 15.98 -3.78 -0.06 -27.10 16 8 N -0.59 -24.04 2.87 -849.85 -2.44 -26.48 16 9 C 0.08 2.56 9.33 127.77 1.19 3.76 16 10 C 0.13 5.88 5.33 86.38 0.46 6.34 16 11 C 0.02 1.36 5.30 29.85 0.16 1.52 16 12 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 13 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 14 C 0.00 0.00 5.46 84.66 0.46 0.46 16 15 N -0.93 -58.78 13.29 21.45 0.28 -58.49 16 16 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 20 N -0.22 -6.66 7.26 -48.49 -0.35 -7.01 16 21 N -0.28 -7.18 11.43 -47.53 -0.54 -7.72 16 22 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.11 0.21 8.09 -2.39 -0.02 0.19 16 24 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.21 1.07 8.06 -2.91 -0.02 1.05 16 26 H 0.17 3.86 7.74 -2.91 -0.02 3.84 16 27 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 28 H 0.07 2.26 8.03 -2.39 -0.02 2.24 16 29 H 0.10 3.23 5.26 -2.58 -0.01 3.22 16 30 H 0.09 3.74 8.07 -2.38 -0.02 3.73 16 31 H 0.06 3.00 7.39 -2.39 -0.02 2.98 16 32 H -0.02 -1.50 8.14 -2.38 -0.02 -1.52 16 33 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -78.29 296.62 4.92 -73.36 By element: Atomic # 1 Polarization: 2.32 SS G_CDS: 1.10 Total: 3.41 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 4.92 Total: 2.80 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -3.05 Total: -99.71 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.06 Total: -27.10 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -78.29 4.92 -73.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259803296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.795 kcal (2) G-P(sol) polarization free energy of solvation -78.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds