Wall clock time and date at job start Mon Mar 30 2020 04:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34261 * 126.28969 * 2 1 4 4 H 0.96996 * 125.75530 * 0.02562 * 3 2 1 5 5 N 1.39937 * 108.49108 * 180.02562 * 3 2 1 6 6 C 1.30451 * 108.89591 * 359.75451 * 5 3 2 7 7 C 1.38048 * 126.29175 * 180.02562 * 2 1 3 8 8 C 1.47426 * 126.41658 * 359.93824 * 7 2 1 9 9 O 1.21603 * 119.99681 * 335.70974 * 8 7 2 10 10 N 1.34780 * 120.00219 * 155.70556 * 8 7 2 11 11 C 1.47467 * 125.62477 * 354.55657 * 10 8 7 12 12 C 1.54912 * 104.80637 * 204.06622 * 11 10 8 13 13 C 1.55153 * 101.61965 * 323.04779 * 12 11 10 14 14 C 1.47013 * 125.64764 * 174.55493 * 10 8 7 15 15 H 1.08996 * 109.88948 * 59.55883 * 14 10 8 16 16 C 1.50704 * 109.88261 * 298.39086 * 14 10 8 17 17 H 1.07992 * 120.00100 * 0.74723 * 16 14 10 18 18 C 1.37878 * 119.99779 * 180.73568 * 16 14 10 19 19 N 1.31515 * 120.00089 * 180.02562 * 18 16 14 20 20 Si 1.86796 * 120.00263 * 0.02562 * 18 16 14 21 21 H 1.48498 * 109.47193 * 89.99650 * 20 18 16 22 22 H 1.48508 * 109.47097 * 209.99596 * 20 18 16 23 23 H 1.48499 * 109.47153 * 329.99370 * 20 18 16 24 24 H 1.08994 * 109.47309 * 269.97170 * 1 2 3 25 25 H 1.09003 * 109.47444 * 29.97577 * 1 2 3 26 26 H 1.09006 * 109.47088 * 149.97593 * 1 2 3 27 27 H 1.08003 * 125.99032 * 180.25443 * 6 5 3 28 28 H 1.09002 * 110.34673 * 85.25493 * 11 10 8 29 29 H 1.08993 * 110.40813 * 322.91182 * 11 10 8 30 30 H 1.08998 * 111.00169 * 204.94930 * 12 11 10 31 31 H 1.09002 * 111.00348 * 81.13933 * 12 11 10 32 32 H 1.08998 * 110.72475 * 153.84667 * 13 12 11 33 33 H 1.09007 * 110.71383 * 276.94328 * 13 12 11 34 34 H 0.96991 * 120.00374 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3016 1.0822 0.0000 4 1 2.0026 2.0049 0.0004 5 7 3.6340 0.6544 -0.0006 6 6 3.6590 -0.6498 0.0043 7 6 2.3240 -1.1127 -0.0005 8 6 1.8858 -2.5203 0.0002 9 8 0.7890 -2.8154 0.4344 10 7 2.7009 -3.4801 -0.4806 11 6 4.0017 -3.2529 -1.1369 12 6 4.2244 -4.5067 -2.0191 13 6 3.6307 -5.6272 -1.1251 14 6 2.4402 -4.9263 -0.4374 15 1 1.5176 -5.1529 -0.9718 16 6 2.3326 -5.3851 0.9941 17 1 2.4342 -4.6721 1.7988 18 6 2.1041 -6.7153 1.2763 19 7 2.0097 -7.1157 2.5254 20 14 1.9287 -7.9487 -0.1156 21 1 3.2628 -8.5061 -0.4541 22 1 1.0257 -9.0487 0.3087 23 1 1.3580 -7.2718 -1.3078 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 4.5448 -1.2676 0.0091 28 1 4.7926 -3.1681 -0.3916 29 1 3.9640 -2.3560 -1.7551 30 1 5.2862 -4.6731 -2.2006 31 1 3.6776 -4.4256 -2.9585 32 1 3.2868 -6.4641 -1.7329 33 1 4.3621 -5.9617 -0.3894 34 1 1.8494 -8.0514 2.7240 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259868301.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:17 Heat of formation + Delta-G solvation = 45.179863 kcal Electronic energy + Delta-G solvation = -18496.528051 eV Core-core repulsion = 15624.236844 eV Total energy + Delta-G solvation = -2872.291207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.24739 -38.83464 -36.46102 -32.79939 -32.44351 -31.37469 -30.36543 -29.01166 -27.12877 -24.51449 -23.03714 -21.88067 -21.01463 -19.98617 -18.25207 -17.36934 -16.88069 -15.69053 -15.27483 -14.96621 -14.50402 -14.29968 -13.80701 -13.40180 -13.07951 -12.75628 -12.74207 -12.47100 -12.36675 -12.10024 -11.53940 -11.42621 -11.18979 -10.78705 -10.56960 -10.27071 -10.07759 -9.85883 -9.55258 -9.26202 -8.95855 -8.51680 -8.46125 -7.54858 -6.01272 -3.99051 1.73905 2.46109 2.78052 3.28657 3.38551 3.39402 3.91153 4.02563 4.43435 4.70905 4.84414 5.07857 5.18101 5.22380 5.42199 5.49604 5.59136 5.59797 5.69389 5.88970 6.01251 6.13709 6.15339 6.17714 6.42486 6.50557 6.61132 6.74323 7.19244 7.23707 7.37322 7.61703 7.67461 8.53141 8.57552 9.05939 9.15209 9.59400 11.12543 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030329 B = 0.007187 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.999155 B = 3895.114736 C = 4354.202560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.145 3.855 3 N -0.470 5.470 4 H 0.438 0.562 5 N -0.305 5.305 6 C 0.083 3.917 7 C -0.275 4.275 8 C 0.601 3.399 9 O -0.533 6.533 10 N -0.596 5.596 11 C 0.102 3.898 12 C -0.134 4.134 13 C -0.142 4.142 14 C 0.239 3.761 15 H 0.035 0.965 16 C -0.507 4.507 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.291 1.291 23 H -0.265 1.265 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.191 0.809 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.480 12.756 -9.376 16.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.013 3.987 3 N -0.177 5.177 4 H 0.282 0.718 5 N -0.126 5.126 6 C -0.104 4.104 7 C -0.290 4.290 8 C 0.389 3.611 9 O -0.410 6.410 10 N -0.328 5.328 11 C -0.022 4.022 12 C -0.172 4.172 13 C -0.181 4.181 14 C 0.137 3.863 15 H 0.052 0.948 16 C -0.546 4.546 17 H 0.095 0.905 18 C -0.129 4.129 19 N -0.537 5.537 20 Si 0.703 3.297 21 H -0.201 1.201 22 H -0.218 1.218 23 H -0.190 1.190 24 H 0.107 0.893 25 H 0.086 0.914 26 H 0.117 0.883 27 H 0.208 0.792 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.534 13.516 -8.992 16.430 hybrid contribution -0.499 -1.050 -0.541 1.282 sum 2.035 12.466 -9.533 15.825 Atomic orbital electron populations 1.20564 0.86162 1.04017 1.04361 1.21482 0.94750 0.86722 0.95793 1.46090 1.04402 1.08178 1.59049 0.71822 1.77088 0.95924 1.13564 1.26015 1.24286 0.97811 0.91627 0.96670 1.20303 0.92709 0.94350 1.21616 1.16636 0.84029 0.82521 0.77923 1.90755 1.20904 1.82437 1.46937 1.48228 1.19171 1.07654 1.57793 1.22325 0.86794 0.97935 0.95142 1.22749 1.00780 0.95630 0.98021 1.23185 0.99837 0.96871 0.98184 1.19642 0.93366 0.75832 0.97469 0.94768 1.21147 1.48760 0.94272 0.90374 0.90523 1.24846 0.94751 0.98052 0.95255 1.69890 1.49727 1.16303 1.17733 0.87021 0.78226 0.81404 0.83065 1.20140 1.21790 1.19022 0.89260 0.91425 0.88281 0.79199 0.91854 0.91595 0.90815 0.91527 0.92201 0.89995 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.77 36.00 0.35 -0.75 16 2 C 0.15 2.08 7.29 -81.60 -0.59 1.48 16 3 N -0.47 -5.73 7.29 33.86 0.25 -5.48 16 4 H 0.44 3.56 8.96 -182.72 -1.64 1.93 16 5 N -0.30 -4.42 12.63 30.86 0.39 -4.03 16 6 C 0.08 1.27 10.18 -16.98 -0.17 1.10 16 7 C -0.28 -4.79 5.77 -105.07 -0.61 -5.40 16 8 C 0.60 13.05 7.42 -12.52 -0.09 12.95 16 9 O -0.53 -13.53 15.51 5.28 0.08 -13.44 16 10 N -0.60 -12.59 3.06 -165.55 -0.51 -13.09 16 11 C 0.10 1.62 5.20 -2.50 -0.01 1.61 16 12 C -0.13 -2.04 7.08 -24.58 -0.17 -2.22 16 13 C -0.14 -2.86 4.64 -24.90 -0.12 -2.97 16 14 C 0.24 5.75 2.34 -68.11 -0.16 5.59 16 15 H 0.03 0.89 7.20 -51.93 -0.37 0.52 16 16 C -0.51 -14.67 8.63 -34.44 -0.30 -14.97 16 17 H 0.08 2.51 8.02 -52.49 -0.42 2.09 16 18 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 19 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 20 Si 0.87 21.49 24.65 -169.99 -4.19 17.30 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.27 -6.25 6.33 56.52 0.36 -5.90 16 24 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.10 1.39 7.21 -51.93 -0.37 1.01 16 27 H 0.19 2.52 5.96 -52.48 -0.31 2.20 16 28 H 0.06 0.94 7.28 -51.93 -0.38 0.56 16 29 H 0.07 0.90 6.93 -51.93 -0.36 0.54 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.18 5.85 -51.93 -0.30 0.87 16 33 H 0.08 1.71 7.84 -51.92 -0.41 1.30 16 34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 277.54 15.07 4.18 4.18 Total: -1.00 -35.52 277.54 -6.43 -41.95 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.44 Total: 1.39 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.97 Total: -1.54 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.90 Total: -49.84 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.19 Total: 17.30 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -35.52 -6.43 -41.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259868301.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.128 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds