Wall clock time and date at job start Mon Mar 30 2020 03:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86809 * 119.99982 * 2 1 4 4 H 1.48500 * 109.46648 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46908 * 300.00040 * 3 2 1 6 6 H 1.48493 * 109.46996 * 60.00222 * 3 2 1 7 7 C 1.37875 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00259 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99792 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.51980 * 60.13803 * 9 7 2 11 11 C 1.53114 * 109.52705 * 300.00459 * 9 7 2 12 12 C 1.53037 * 109.31211 * 182.42085 * 11 9 7 13 13 N 1.46929 * 109.47910 * 59.15772 * 12 11 9 14 14 C 1.46850 * 111.22205 * 298.28247 * 13 12 11 15 15 H 1.08997 * 109.45187 * 301.73383 * 14 13 12 16 16 C 1.50696 * 109.46168 * 181.75606 * 14 13 12 17 17 C 1.38619 * 120.41308 * 4.95520 * 16 14 13 18 18 C 1.38568 * 118.51756 * 179.97438 * 17 16 14 19 19 N 1.32308 * 119.18043 * 359.97438 * 18 17 16 20 20 C 1.32310 * 120.75958 * 0.02562 * 19 18 17 21 21 O 1.35457 * 119.19528 * 180.02562 * 20 19 18 22 22 N 1.32288 * 120.41000 * 184.66754 * 16 14 13 23 23 C 1.53037 * 109.52028 * 61.74456 * 14 13 12 24 24 H 0.96997 * 120.00031 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.50377 * 302.38210 * 11 9 7 26 26 H 1.09003 * 109.50316 * 62.46205 * 11 9 7 27 27 H 1.08994 * 109.46612 * 179.21753 * 12 11 9 28 28 H 1.09007 * 109.46083 * 299.18512 * 12 11 9 29 29 H 1.00900 * 110.98893 * 62.39268 * 13 12 11 30 30 H 1.07996 * 120.73749 * 359.97438 * 17 16 14 31 31 H 1.08001 * 120.40774 * 179.97438 * 18 17 16 32 32 H 0.96704 * 114.00038 * 89.99340 * 21 20 19 33 33 H 1.08997 * 109.50150 * 180.88044 * 23 14 13 34 34 H 1.09006 * 109.50306 * 60.75855 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6256 -2.5585 -0.8912 11 6 0.3707 -2.5818 1.2495 12 6 -0.3459 -3.9338 1.2754 13 7 0.6486 -5.0153 1.2818 14 6 1.4749 -4.9849 0.0682 15 1 0.8344 -5.0731 -0.8093 16 6 2.4499 -6.1336 0.0957 17 6 2.3966 -7.0752 1.1117 18 6 3.3117 -8.1156 1.0982 19 7 4.2026 -8.1785 0.1220 20 6 4.2259 -7.2629 -0.8328 21 8 5.1514 -7.3584 -1.8173 22 7 3.3637 -6.2592 -0.8525 23 6 2.2450 -3.6639 0.0068 24 1 -0.4850 0.8400 0.0004 25 1 0.9920 -2.4821 2.1395 26 1 -0.3669 -1.7794 1.2289 27 1 -0.9627 -4.0009 2.1715 28 1 -0.9777 -4.0269 0.3920 29 1 1.2222 -4.9740 2.1109 30 1 1.6582 -6.9995 1.8962 31 1 3.2980 -8.8658 1.8750 32 1 4.8596 -7.8721 -2.5829 33 1 2.8462 -3.6350 -0.9019 34 1 2.8959 -3.5813 0.8773 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259947309.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:15 Heat of formation + Delta-G solvation = -18.491397 kcal Electronic energy + Delta-G solvation = -18063.598333 eV Core-core repulsion = 15188.546133 eV Total energy + Delta-G solvation = -2875.052200 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.23878 -39.82142 -38.25146 -35.57429 -34.77992 -32.75150 -32.17119 -30.73617 -27.35951 -25.85312 -25.07724 -23.36420 -22.79147 -21.08819 -19.97028 -18.78813 -18.40733 -17.51358 -16.84280 -16.54624 -15.93195 -15.77047 -15.22753 -15.06064 -14.65878 -14.61347 -14.02860 -13.88213 -13.35748 -13.09128 -12.99746 -12.82311 -12.56588 -12.32954 -12.05146 -12.01628 -11.64960 -11.42077 -11.26789 -10.85759 -10.50895 -10.32829 -10.14798 -9.31136 -8.11132 -6.26750 -0.17308 0.05215 1.35390 1.38138 1.48807 2.07528 2.39168 2.63613 2.94372 3.13360 3.46595 3.63434 3.95899 4.12315 4.19210 4.35218 4.46457 4.52426 4.64657 4.69148 4.80530 4.81852 5.03876 5.17670 5.24675 5.32795 5.45818 5.57174 5.84114 5.92382 5.94513 6.20226 6.34576 6.45930 6.58008 6.83563 7.00685 7.41374 8.90809 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.029515 B = 0.005733 C = 0.005010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.439084 B = 4883.149117 C = 5587.977781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.018 3.982 3 Si 0.949 3.051 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.538 4.538 8 H 0.041 0.959 9 C 0.047 3.953 10 H -0.005 1.005 11 C -0.137 4.137 12 C 0.069 3.931 13 N -0.659 5.659 14 C 0.142 3.858 15 H 0.091 0.909 16 C 0.193 3.807 17 C -0.210 4.210 18 C 0.171 3.829 19 N -0.547 5.547 20 C 0.477 3.523 21 O -0.471 6.471 22 N -0.553 5.553 23 C -0.111 4.111 24 H 0.262 0.738 25 H 0.031 0.969 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.346 0.654 30 H 0.187 0.813 31 H 0.219 0.781 32 H 0.428 0.572 33 H 0.042 0.958 34 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.665 -15.842 3.626 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.181 4.181 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.059 0.941 9 C 0.029 3.971 10 H 0.013 0.987 11 C -0.176 4.176 12 C -0.060 4.060 13 N -0.289 5.289 14 C 0.031 3.969 15 H 0.109 0.891 16 C 0.048 3.952 17 C -0.232 4.232 18 C 0.006 3.994 19 N -0.273 5.273 20 C 0.172 3.828 21 O -0.277 6.277 22 N -0.280 5.280 23 C -0.151 4.151 24 H 0.071 0.929 25 H 0.049 0.951 26 H 0.084 0.916 27 H 0.111 0.889 28 H 0.079 0.921 29 H 0.164 0.836 30 H 0.204 0.796 31 H 0.236 0.764 32 H 0.290 0.710 33 H 0.061 0.939 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.164 -15.955 2.906 16.362 hybrid contribution 0.337 2.020 -0.064 2.049 sum 2.501 -13.936 2.843 14.441 Atomic orbital electron populations 1.69988 1.06829 1.27100 1.51114 1.25642 0.95704 1.02002 0.94731 0.85648 0.78845 0.80152 0.77870 1.19937 1.20504 1.20123 1.21536 0.92605 0.92544 1.50882 0.94095 1.18642 0.92835 0.91688 0.93967 0.98667 1.22107 0.99768 0.98401 0.97368 1.22006 0.93874 0.87696 1.02469 1.60883 1.17889 1.46784 1.03341 1.20200 0.91615 0.89534 0.95546 0.89121 1.21524 0.90434 0.94485 0.88759 1.23061 1.02939 0.95761 1.01400 1.23867 0.86011 0.95943 0.93544 1.68021 1.25849 1.28066 1.05341 1.20364 0.86454 0.86399 0.89589 1.84669 1.36551 1.76687 1.29820 1.67561 1.05696 1.24672 1.30031 1.21998 0.98243 0.94717 1.00099 0.92895 0.95061 0.91626 0.88870 0.92095 0.83580 0.79565 0.76418 0.71027 0.93942 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.90 11.35 21.45 0.24 -51.66 16 2 C 0.02 1.02 5.30 84.65 0.45 1.47 16 3 Si 0.95 44.16 29.54 68.60 2.03 46.19 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.54 -30.24 8.57 25.60 0.22 -30.02 16 8 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 9 C 0.05 2.35 2.17 -11.46 -0.02 2.32 16 10 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 11 C -0.14 -6.04 5.10 30.64 0.16 -5.88 16 12 C 0.07 2.28 6.56 86.31 0.57 2.84 16 13 N -0.66 -18.81 5.39 -495.37 -2.67 -21.47 16 14 C 0.14 4.77 2.92 44.19 0.13 4.90 16 15 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 16 C 0.19 5.82 6.18 42.58 0.26 6.08 16 17 C -0.21 -4.57 9.24 22.44 0.21 -4.36 16 18 C 0.17 3.30 11.30 84.70 0.96 4.26 16 19 N -0.55 -14.20 10.46 -313.49 -3.28 -17.48 16 20 C 0.48 14.24 8.72 180.57 1.57 15.82 16 21 O -0.47 -12.37 13.64 -87.55 -1.19 -13.57 16 22 N -0.55 -18.54 10.09 -301.48 -3.04 -21.58 16 23 C -0.11 -4.69 4.44 30.65 0.14 -4.55 16 24 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.07 3.33 6.15 -2.39 -0.01 3.31 16 27 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 29 H 0.35 8.87 7.99 -89.69 -0.72 8.15 16 30 H 0.19 3.06 6.72 -2.91 -0.02 3.04 16 31 H 0.22 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.43 6.36 9.06 -74.05 -0.67 5.68 16 33 H 0.04 1.95 8.01 -2.39 -0.02 1.93 16 34 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -68.42 283.17 -3.53 -71.95 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -0.25 Total: 14.75 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 4.63 Total: -7.13 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -8.75 Total: -112.20 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.19 Total: -13.57 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -68.42 -3.53 -71.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259947309.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.463 kcal (2) G-P(sol) polarization free energy of solvation -68.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds