Wall clock time and date at job start Mon Mar 30 2020 04:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46898 * 2 1 4 4 C 1.53001 * 109.47100 * 119.99725 * 2 1 3 5 5 H 1.09001 * 109.47458 * 297.02931 * 4 2 1 6 6 C 1.50699 * 109.46865 * 57.03101 * 4 2 1 7 7 H 1.07996 * 120.00341 * 35.35143 * 6 4 2 8 8 C 1.37885 * 119.99885 * 215.34887 * 6 4 2 9 9 N 1.31509 * 120.00120 * 173.21031 * 8 6 4 10 10 Si 1.86799 * 119.99924 * 353.20796 * 8 6 4 11 11 H 1.48502 * 109.47009 * 93.09144 * 10 8 6 12 12 H 1.48500 * 109.47188 * 213.09295 * 10 8 6 13 13 H 1.48502 * 109.46947 * 333.09429 * 10 8 6 14 14 N 1.46497 * 109.46985 * 177.02932 * 4 2 1 15 15 C 1.34780 * 120.00365 * 85.00120 * 14 4 2 16 16 O 1.21552 * 119.99551 * 0.02562 * 15 14 4 17 17 C 1.47826 * 120.00457 * 179.97438 * 15 14 4 18 18 C 1.39955 * 120.93853 * 359.71936 * 17 15 14 19 19 N 1.32145 * 118.92368 * 179.69690 * 18 17 15 20 20 C 1.31868 * 120.96624 * 0.61146 * 19 18 17 21 21 N 1.31866 * 122.09798 * 359.66175 * 20 19 18 22 22 C 1.32146 * 120.96490 * 0.02562 * 21 20 19 23 23 H 1.08997 * 109.47411 * 302.43407 * 1 2 3 24 24 H 1.08995 * 109.47340 * 62.43820 * 1 2 3 25 25 H 1.09006 * 109.46851 * 182.43376 * 1 2 3 26 26 H 1.08997 * 109.47607 * 239.99823 * 2 1 3 27 27 H 1.09003 * 109.47007 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47154 * 299.99956 * 3 2 1 29 29 H 1.09002 * 109.47247 * 60.00266 * 3 2 1 30 30 H 0.96994 * 120.00641 * 180.02562 * 9 8 6 31 31 H 0.97004 * 119.99860 * 264.99677 * 14 4 2 32 32 H 1.08000 * 120.53522 * 359.97438 * 18 17 15 33 33 H 1.08001 * 118.95533 * 179.67728 * 20 19 18 34 34 H 1.08002 * 120.53860 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.7208 -0.1775 2.1385 6 6 1.4784 -2.1191 1.2866 7 1 1.3351 -2.6683 0.3678 8 6 1.1477 -2.6972 2.4940 9 7 0.5353 -3.8607 2.5201 10 14 1.5696 -1.8277 4.0925 11 1 0.4135 -1.0035 4.5277 12 1 1.8801 -2.8360 5.1375 13 1 2.7507 -0.9522 3.8830 14 7 3.5032 -0.7835 1.2140 15 6 4.2332 0.2529 1.6720 16 8 3.6773 1.2390 2.1147 17 6 5.7096 0.1898 1.6369 18 6 6.3700 -0.9387 1.1378 19 7 7.6913 -0.9501 1.1195 20 6 8.3850 0.0755 1.5733 21 7 7.8036 1.1557 2.0570 22 6 6.4868 1.2543 2.1074 23 1 -0.3634 0.5511 0.8673 24 1 -0.3634 0.4755 -0.9110 25 1 -0.3633 -1.0268 0.0436 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 0.3023 -4.2673 3.3694 31 1 3.9468 -1.5707 0.8611 32 1 5.8087 -1.7847 0.7693 33 1 9.4637 0.0294 1.5477 34 1 6.0178 2.1424 2.5046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259950740.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:56 Heat of formation + Delta-G solvation = -0.303217 kcal Electronic energy + Delta-G solvation = -18335.105652 eV Core-core repulsion = 15460.842151 eV Total energy + Delta-G solvation = -2874.263501 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09553 -39.02858 -35.87384 -33.93572 -32.91820 -32.52004 -31.64974 -27.76787 -26.23066 -24.97793 -24.46784 -22.62638 -20.39957 -19.25045 -18.03326 -17.56546 -17.38780 -16.38293 -15.28588 -15.18487 -14.63221 -14.21493 -14.08166 -13.69485 -13.41664 -13.03286 -12.79252 -12.14787 -11.96125 -11.62510 -11.40518 -11.18738 -11.04983 -10.93236 -10.43337 -10.33845 -9.98433 -9.85576 -9.63375 -9.42495 -9.35388 -9.24489 -8.83167 -8.05452 -6.38106 -4.44999 0.50204 0.97873 3.16819 3.21488 3.28443 3.38390 3.74839 3.94960 4.00295 4.12187 4.22820 4.48797 4.85255 5.00389 5.26402 5.38323 5.74331 5.77729 5.87123 6.00976 6.22620 6.34666 6.53559 6.61160 6.61837 6.79026 6.81664 6.92511 7.16625 7.20331 7.29926 7.52725 7.91083 8.02211 8.46947 8.69354 8.84763 9.24828 10.71720 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.007850 C = 0.006796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.950900 B = 3565.925909 C = 4119.251282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.138 4.138 4 C 0.234 3.766 5 H 0.055 0.945 6 C -0.523 4.523 7 H 0.081 0.919 8 C 0.088 3.912 9 N -0.876 5.876 10 Si 0.870 3.130 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.256 1.256 14 N -0.697 5.697 15 C 0.546 3.454 16 O -0.546 6.546 17 C -0.229 4.229 18 C 0.178 3.822 19 N -0.523 5.523 20 C 0.299 3.701 21 N -0.526 5.526 22 C 0.197 3.803 23 H 0.043 0.957 24 H 0.034 0.966 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.046 0.954 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.269 0.731 31 H 0.388 0.612 32 H 0.175 0.825 33 H 0.198 0.802 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.466 6.163 -2.833 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.110 4.110 3 C -0.195 4.195 4 C 0.134 3.866 5 H 0.073 0.927 6 C -0.561 4.561 7 H 0.099 0.901 8 C -0.119 4.119 9 N -0.511 5.511 10 Si 0.697 3.303 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.180 1.180 14 N -0.346 5.346 15 C 0.329 3.671 16 O -0.426 6.426 17 C -0.236 4.236 18 C 0.011 3.989 19 N -0.236 5.236 20 C 0.012 3.988 21 N -0.239 5.239 22 C 0.031 3.969 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.223 0.777 32 H 0.192 0.808 33 H 0.214 0.786 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 9.939 6.643 -2.439 12.201 hybrid contribution -0.418 -0.106 0.816 0.923 sum 9.521 6.537 -1.623 11.663 Atomic orbital electron populations 1.21682 0.95104 1.02868 0.99254 1.21334 0.96006 0.94587 0.99090 1.21935 1.00539 0.96971 1.00102 1.19337 0.75557 0.96932 0.94748 0.92680 1.21041 1.41850 0.98200 0.95004 0.90055 1.25114 0.93082 0.94439 0.99286 1.69896 1.37460 1.16670 1.27097 0.86918 0.80521 0.79746 0.83146 1.19958 1.21366 1.18026 1.47745 1.09822 1.16851 1.60179 1.17990 0.84861 0.84629 0.79596 1.90728 1.72084 1.32229 1.47556 1.22309 0.98028 0.98214 1.05062 1.23595 0.90280 0.95956 0.89084 1.68444 1.08217 1.29453 1.17528 1.25147 1.01412 0.83995 0.88251 1.68516 1.11853 1.26597 1.16972 1.23491 0.88334 0.97065 0.88052 0.93786 0.94717 0.90761 0.92428 0.93502 0.94887 0.92663 0.92086 0.77651 0.80823 0.78586 0.80384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.96 37.16 0.33 -2.13 16 2 C -0.09 -1.75 2.70 -90.62 -0.24 -1.99 16 3 C -0.14 -2.52 7.76 37.16 0.29 -2.23 16 4 C 0.23 5.06 1.28 -69.08 -0.09 4.98 16 5 H 0.06 1.33 5.14 -51.93 -0.27 1.06 16 6 C -0.52 -12.84 7.59 -34.44 -0.26 -13.10 16 7 H 0.08 2.15 8.06 -52.49 -0.42 1.72 16 8 C 0.09 2.29 5.47 -17.82 -0.10 2.19 16 9 N -0.88 -24.33 13.96 55.43 0.77 -23.56 16 10 Si 0.87 20.69 26.99 -169.99 -4.59 16.11 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.26 -6.14 6.91 56.52 0.39 -5.75 16 14 N -0.70 -13.23 4.96 -55.89 -0.28 -13.51 16 15 C 0.55 10.15 6.26 -12.34 -0.08 10.07 16 16 O -0.55 -11.55 13.57 5.32 0.07 -11.47 16 17 C -0.23 -3.53 5.91 -104.69 -0.62 -4.15 16 18 C 0.18 2.44 10.81 -16.77 -0.18 2.26 16 19 N -0.52 -6.99 10.42 -14.24 -0.15 -7.13 16 20 C 0.30 3.61 12.27 -92.03 -1.13 2.48 16 21 N -0.53 -7.13 10.42 -14.25 -0.15 -7.28 16 22 C 0.20 2.85 10.88 -16.78 -0.18 2.67 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 1.52 7.04 -51.93 -0.37 1.16 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.05 0.86 5.69 -51.93 -0.30 0.57 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.07 7.72 -51.93 -0.40 0.67 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 6.53 6.73 -40.82 -0.27 6.25 16 32 H 0.17 2.05 6.54 -52.49 -0.34 1.70 16 33 H 0.20 1.59 8.06 -52.49 -0.42 1.17 16 34 H 0.18 2.41 7.74 -52.49 -0.41 2.01 16 LS Contribution 284.93 15.07 4.29 4.29 Total: -1.00 -29.19 284.93 -6.32 -35.51 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.04 Total: 6.00 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.26 Total: 1.04 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.20 Total: -51.48 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.59 Total: 16.11 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.19 -6.32 -35.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259950740.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.207 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds