Wall clock time and date at job start Mon Mar 30 2020 03:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99970 * 2 1 4 4 H 1.48497 * 109.47177 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47125 * 120.00288 * 3 2 1 6 6 H 1.48501 * 109.47149 * 239.99923 * 3 2 1 7 7 C 1.37879 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99500 * 18.07334 * 7 2 1 9 9 C 1.50695 * 120.00175 * 198.06819 * 7 2 1 10 10 H 1.09001 * 109.51027 * 305.76247 * 9 7 2 11 11 C 1.53094 * 109.50714 * 65.89123 * 9 7 2 12 12 O 1.43012 * 109.26282 * 176.78237 * 11 9 7 13 13 C 1.43020 * 113.73730 * 301.33163 * 12 11 9 14 14 C 1.53105 * 109.25818 * 58.66570 * 13 12 11 15 15 N 1.47009 * 109.25703 * 303.15480 * 14 13 12 16 16 C 1.46905 * 110.99892 * 182.39538 * 15 14 13 17 17 C 1.50696 * 109.46979 * 66.36022 * 16 15 14 18 18 C 1.38596 * 120.80056 * 269.71938 * 17 16 15 19 19 N 1.32342 * 119.10314 * 179.72177 * 18 17 16 20 20 C 1.31794 * 120.81523 * 0.56837 * 19 18 17 21 21 N 1.31801 * 121.75810 * 359.70998 * 20 19 18 22 22 C 1.32331 * 120.81492 * 359.97438 * 21 20 19 23 23 H 0.96996 * 120.00432 * 174.79641 * 1 2 3 24 24 H 1.09001 * 109.50675 * 296.71754 * 11 9 7 25 25 H 1.08999 * 109.50715 * 56.84404 * 11 9 7 26 26 H 1.08997 * 109.50482 * 298.73344 * 13 12 11 27 27 H 1.08997 * 109.50462 * 178.59854 * 13 12 11 28 28 H 1.08998 * 109.50353 * 183.21840 * 14 13 12 29 29 H 1.09002 * 109.54183 * 63.10750 * 14 13 12 30 30 H 1.09001 * 109.47139 * 186.36309 * 16 15 14 31 31 H 1.08998 * 109.46947 * 306.36141 * 16 15 14 32 32 H 1.07994 * 120.44785 * 0.02562 * 18 17 16 33 33 H 1.07999 * 119.12104 * 179.68461 * 20 19 18 34 34 H 1.07996 * 120.44715 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 1.5045 -2.1064 -0.2892 9 6 3.4558 -1.2260 0.4053 10 1 4.0174 -0.5117 -0.1967 11 6 3.5817 -0.8584 1.8861 12 8 4.9515 -0.9632 2.2834 13 6 5.5085 -2.2665 2.0915 14 6 5.4021 -2.6484 0.6127 15 7 3.9948 -2.5773 0.1937 16 6 3.8410 -2.9920 -1.2072 17 6 4.1733 -4.4562 -1.3369 18 6 5.4678 -4.8686 -1.6107 19 7 5.7231 -6.1632 -1.7121 20 6 4.7627 -7.0541 -1.5672 21 7 3.5195 -6.6986 -1.3119 22 6 3.1905 -5.4226 -1.1908 23 1 -0.4850 -0.8365 -0.0762 24 1 3.2360 0.1641 2.0379 25 1 2.9763 -1.5403 2.4832 26 1 4.9592 -2.9894 2.6946 27 1 6.5563 -2.2623 2.3919 28 1 5.7731 -3.6635 0.4714 29 1 5.9954 -1.9573 0.0140 30 1 2.8122 -2.8233 -1.5253 31 1 4.5155 -2.4094 -1.8347 32 1 6.2585 -4.1436 -1.7347 33 1 5.0007 -8.1034 -1.6605 34 1 2.1701 -5.1380 -0.9811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259957764.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:36 Heat of formation + Delta-G solvation = 14.217901 kcal Electronic energy + Delta-G solvation = -18495.694295 eV Core-core repulsion = 15622.060477 eV Total energy + Delta-G solvation = -2873.633818 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.92667 -38.90173 -35.63912 -33.60284 -33.32159 -32.02829 -30.48357 -27.87214 -25.33090 -24.64365 -24.31445 -22.06338 -21.81815 -19.37572 -17.82167 -17.51940 -17.34688 -15.97174 -15.56010 -14.96731 -14.62319 -14.35697 -14.11028 -13.71724 -13.57595 -13.42409 -13.26265 -13.02064 -11.98563 -11.93121 -11.49711 -11.14484 -11.04114 -10.68843 -10.57743 -10.42598 -10.13023 -9.84496 -9.41304 -9.23469 -9.13210 -8.73045 -8.42401 -7.65910 -6.64312 -4.26078 0.99771 1.16747 3.27257 3.33400 3.49627 3.83923 4.20125 4.31653 4.32806 4.47183 4.58721 4.75763 4.99647 5.05124 5.08632 5.39680 5.52705 5.55501 5.65221 5.77823 5.93846 6.08144 6.13155 6.19614 6.28475 6.43195 6.53439 6.61602 6.91975 7.03256 7.30834 7.64841 7.75920 8.09691 8.14001 8.24188 8.76811 9.42218 10.76647 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025776 B = 0.007390 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.039376 B = 3787.794194 C = 4443.361530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.035 3.965 3 Si 1.038 2.962 4 H -0.282 1.282 5 H -0.272 1.272 6 H -0.283 1.283 7 C -0.600 4.600 8 H 0.068 0.932 9 C 0.166 3.834 10 H 0.003 0.997 11 C 0.056 3.944 12 O -0.402 6.402 13 C 0.070 3.930 14 C 0.012 3.988 15 N -0.519 5.519 16 C 0.104 3.896 17 C -0.164 4.164 18 C 0.143 3.857 19 N -0.524 5.524 20 C 0.276 3.724 21 N -0.522 5.522 22 C 0.165 3.835 23 H 0.271 0.729 24 H 0.096 0.904 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.109 0.891 31 H 0.039 0.961 32 H 0.161 0.839 33 H 0.191 0.809 34 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.836 -7.108 -1.478 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.172 4.172 3 Si 0.866 3.134 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.209 1.209 7 C -0.637 4.637 8 H 0.086 0.914 9 C 0.059 3.941 10 H 0.020 0.980 11 C -0.020 4.020 12 O -0.321 6.321 13 C -0.008 4.008 14 C -0.117 4.117 15 N -0.244 5.244 16 C -0.024 4.024 17 C -0.169 4.169 18 C -0.023 4.023 19 N -0.238 5.238 20 C -0.012 4.012 21 N -0.235 5.235 22 C 0.000 4.000 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.127 0.873 31 H 0.057 0.943 32 H 0.178 0.822 33 H 0.208 0.792 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 9.656 -6.591 -1.119 11.744 hybrid contribution 0.329 -0.544 -0.617 0.886 sum 9.984 -7.135 -1.736 12.394 Atomic orbital electron populations 1.70856 1.06775 1.31176 1.43957 1.25702 0.96162 1.02227 0.93136 0.84118 0.75502 0.76201 0.77546 1.20718 1.19843 1.20900 1.21839 0.93891 0.96529 1.51482 0.91374 1.20190 0.96917 0.84151 0.92887 0.97984 1.23540 0.79936 1.02120 0.96427 1.87883 1.28456 1.29998 1.85747 1.22450 0.98103 0.85856 0.94372 1.22844 0.91126 1.00280 0.97456 1.62181 1.14636 1.28846 1.18728 1.20889 1.03931 0.87471 0.90131 1.21865 0.95446 0.99469 1.00088 1.23133 0.95329 0.92510 0.91359 1.68379 1.37380 1.02767 1.15240 1.24852 0.84253 1.00026 0.92079 1.68440 1.21484 1.19956 1.13642 1.23219 1.00517 0.87096 0.89214 0.91893 0.88672 0.92944 0.93171 0.89716 0.91332 0.94725 0.87309 0.94307 0.82179 0.79244 0.81301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.69 55.43 0.76 -24.89 16 2 C 0.03 0.93 5.34 -17.82 -0.10 0.83 16 3 Si 1.04 23.72 26.43 -169.99 -4.49 19.23 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.27 -5.85 5.57 56.52 0.31 -5.53 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.60 -15.30 7.91 -34.44 -0.27 -15.57 16 8 H 0.07 1.85 7.07 -52.49 -0.37 1.48 16 9 C 0.17 3.73 1.55 -68.76 -0.11 3.62 16 10 H 0.00 0.06 6.78 -51.93 -0.35 -0.29 16 11 C 0.06 1.23 5.97 37.21 0.22 1.45 16 12 O -0.40 -8.15 10.83 -35.23 -0.38 -8.53 16 13 C 0.07 1.16 7.01 37.21 0.26 1.43 16 14 C 0.01 0.20 5.31 -3.71 -0.02 0.18 16 15 N -0.52 -10.05 4.52 -229.17 -1.04 -11.08 16 16 C 0.10 1.81 4.96 -4.98 -0.02 1.78 16 17 C -0.16 -2.49 4.90 -104.36 -0.51 -3.00 16 18 C 0.14 1.98 9.30 -17.20 -0.16 1.82 16 19 N -0.52 -7.37 10.44 -14.58 -0.15 -7.52 16 20 C 0.28 3.67 12.29 -92.15 -1.13 2.54 16 21 N -0.52 -7.79 10.44 -14.58 -0.15 -7.94 16 22 C 0.17 2.53 11.01 -17.20 -0.19 2.34 16 23 H 0.27 7.72 8.73 -40.82 -0.36 7.37 16 24 H 0.10 2.15 4.88 -51.93 -0.25 1.90 16 25 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.07 1.03 6.06 -51.93 -0.31 0.71 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.11 2.09 6.12 -51.93 -0.32 1.77 16 31 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 32 H 0.16 1.89 8.05 -52.49 -0.42 1.47 16 33 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.17 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 276.12 15.07 4.16 4.16 Total: -1.00 -28.90 276.12 -7.55 -36.45 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -4.23 Total: 2.71 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.03 Total: -2.59 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.58 Total: -51.43 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.38 Total: -8.53 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.49 Total: 19.23 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.90 -7.55 -36.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259957764.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.666 kcal (2) G-P(sol) polarization free energy of solvation -28.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds