Wall clock time and date at job start Mon Mar 30 2020 03:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99970 * 2 1 4 4 H 1.48497 * 109.47177 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47125 * 120.00288 * 3 2 1 6 6 H 1.48501 * 109.47149 * 239.99923 * 3 2 1 7 7 C 1.37879 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99500 * 18.07334 * 7 2 1 9 9 C 1.50695 * 120.00175 * 198.06819 * 7 2 1 10 10 H 1.09001 * 109.51027 * 305.76247 * 9 7 2 11 11 C 1.53094 * 109.50714 * 65.89123 * 9 7 2 12 12 O 1.43012 * 109.26282 * 176.78237 * 11 9 7 13 13 C 1.43020 * 113.73730 * 301.33163 * 12 11 9 14 14 C 1.53105 * 109.25818 * 58.66570 * 13 12 11 15 15 N 1.47009 * 109.25703 * 303.15480 * 14 13 12 16 16 C 1.46905 * 110.99892 * 182.39538 * 15 14 13 17 17 C 1.50696 * 109.46979 * 66.36022 * 16 15 14 18 18 C 1.38596 * 120.80056 * 269.71938 * 17 16 15 19 19 N 1.32342 * 119.10314 * 179.72177 * 18 17 16 20 20 C 1.31794 * 120.81523 * 0.56837 * 19 18 17 21 21 N 1.31801 * 121.75810 * 359.70998 * 20 19 18 22 22 C 1.32331 * 120.81492 * 359.97438 * 21 20 19 23 23 H 0.96996 * 120.00432 * 174.79641 * 1 2 3 24 24 H 1.09001 * 109.50675 * 296.71754 * 11 9 7 25 25 H 1.08999 * 109.50715 * 56.84404 * 11 9 7 26 26 H 1.08997 * 109.50482 * 298.73344 * 13 12 11 27 27 H 1.08997 * 109.50462 * 178.59854 * 13 12 11 28 28 H 1.08998 * 109.50353 * 183.21840 * 14 13 12 29 29 H 1.09002 * 109.54183 * 63.10750 * 14 13 12 30 30 H 1.09001 * 109.47139 * 186.36309 * 16 15 14 31 31 H 1.08998 * 109.46947 * 306.36141 * 16 15 14 32 32 H 1.07994 * 120.44785 * 0.02562 * 18 17 16 33 33 H 1.07999 * 119.12104 * 179.68461 * 20 19 18 34 34 H 1.07996 * 120.44715 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 1.5045 -2.1064 -0.2892 9 6 3.4558 -1.2260 0.4053 10 1 4.0174 -0.5117 -0.1967 11 6 3.5817 -0.8584 1.8861 12 8 4.9515 -0.9632 2.2834 13 6 5.5085 -2.2665 2.0915 14 6 5.4021 -2.6484 0.6127 15 7 3.9948 -2.5773 0.1937 16 6 3.8410 -2.9920 -1.2072 17 6 4.1733 -4.4562 -1.3369 18 6 5.4678 -4.8686 -1.6107 19 7 5.7231 -6.1632 -1.7121 20 6 4.7627 -7.0541 -1.5672 21 7 3.5195 -6.6986 -1.3119 22 6 3.1905 -5.4226 -1.1908 23 1 -0.4850 -0.8365 -0.0762 24 1 3.2360 0.1641 2.0379 25 1 2.9763 -1.5403 2.4832 26 1 4.9592 -2.9894 2.6946 27 1 6.5563 -2.2623 2.3919 28 1 5.7731 -3.6635 0.4714 29 1 5.9954 -1.9573 0.0140 30 1 2.8122 -2.8233 -1.5253 31 1 4.5155 -2.4094 -1.8347 32 1 6.2585 -4.1436 -1.7347 33 1 5.0007 -8.1034 -1.6605 34 1 2.1701 -5.1380 -0.9811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259957764.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:36 Heat of formation + Delta-G solvation = -6.614764 kcal Electronic energy + Delta-G solvation = -18496.597667 eV Core-core repulsion = 15622.060477 eV Total energy + Delta-G solvation = -2874.537190 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.07040 -40.43171 -37.12118 -35.22523 -34.69859 -33.40404 -32.14261 -29.28640 -27.00892 -26.00035 -25.56602 -23.68900 -23.13242 -21.00200 -19.77943 -18.58264 -18.51499 -17.49011 -17.10132 -16.47807 -15.98378 -15.80292 -15.60558 -15.45568 -14.76752 -14.63439 -14.52610 -14.36759 -13.94879 -13.47738 -13.12675 -12.83524 -12.47950 -12.03007 -11.96782 -11.84504 -11.78089 -11.53165 -11.05827 -10.60969 -10.49172 -10.34437 -10.23857 -9.18642 -8.77042 -6.37969 -0.12375 0.02557 1.45710 1.49626 1.69186 2.43919 2.67507 2.96047 3.02456 3.18272 3.21014 3.24258 3.63179 3.72826 3.85211 4.07042 4.25411 4.28107 4.38962 4.42617 4.52216 4.59303 4.71364 4.82344 4.84761 4.93866 5.01950 5.19109 5.39410 5.59161 5.89593 5.96387 6.08079 6.24247 6.43014 6.66740 7.03981 7.37992 8.63430 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025776 B = 0.007390 C = 0.006300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.039376 B = 3787.794194 C = 4443.361530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 1.072 2.928 4 H -0.287 1.287 5 H -0.249 1.249 6 H -0.266 1.266 7 C -0.590 4.590 8 H 0.038 0.962 9 C 0.170 3.830 10 H 0.000 1.000 11 C 0.064 3.936 12 O -0.408 6.408 13 C 0.061 3.939 14 C 0.014 3.986 15 N -0.534 5.534 16 C 0.113 3.887 17 C -0.172 4.172 18 C 0.154 3.846 19 N -0.529 5.529 20 C 0.280 3.720 21 N -0.537 5.537 22 C 0.156 3.844 23 H 0.256 0.744 24 H 0.087 0.913 25 H 0.038 0.962 26 H 0.047 0.953 27 H 0.124 0.876 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.186 0.814 33 H 0.226 0.774 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.859 -7.658 -1.482 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.211 4.211 3 Si 0.895 3.105 4 H -0.213 1.213 5 H -0.174 1.174 6 H -0.192 1.192 7 C -0.628 4.628 8 H 0.057 0.943 9 C 0.062 3.938 10 H 0.017 0.983 11 C -0.013 4.013 12 O -0.327 6.327 13 C -0.015 4.015 14 C -0.114 4.114 15 N -0.259 5.259 16 C -0.016 4.016 17 C -0.177 4.177 18 C -0.013 4.013 19 N -0.242 5.242 20 C -0.007 4.007 21 N -0.250 5.250 22 C -0.009 4.009 23 H 0.066 0.934 24 H 0.105 0.895 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.142 0.858 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.203 0.797 33 H 0.242 0.758 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.701 -7.178 -1.122 14.632 hybrid contribution -0.563 -0.556 -0.639 1.017 sum 12.138 -7.734 -1.761 14.500 Atomic orbital electron populations 1.70974 1.08006 1.30322 1.47206 1.26897 0.96062 1.05587 0.92568 0.83688 0.74984 0.72655 0.79164 1.21267 1.17409 1.19153 1.21958 0.95707 0.95177 1.49914 0.94346 1.19974 0.94767 0.86007 0.93076 0.98282 1.23221 0.81125 1.01259 0.95661 1.87867 1.26994 1.32147 1.85683 1.22790 0.99998 0.84207 0.94519 1.22910 0.89255 1.01820 0.97382 1.62087 1.16894 1.26755 1.20175 1.20699 1.02456 0.89201 0.89222 1.21595 0.96297 0.97873 1.01933 1.23457 0.95039 0.93043 0.89733 1.68510 1.37393 1.02782 1.15548 1.25597 0.83460 1.01538 0.90143 1.68494 1.22557 1.19488 1.14490 1.23201 1.00526 0.87731 0.89487 0.93441 0.89471 0.94356 0.93424 0.85795 0.89190 0.93725 0.90344 0.93183 0.79748 0.75784 0.82146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.69 21.45 0.29 -54.90 16 2 C -0.01 -0.59 5.34 84.66 0.45 -0.13 16 3 Si 1.07 47.54 26.43 68.60 1.81 49.35 16 4 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 5 H -0.25 -10.08 5.57 99.48 0.55 -9.53 16 6 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 7 C -0.59 -30.85 7.91 25.60 0.20 -30.64 16 8 H 0.04 2.20 7.07 -2.91 -0.02 2.18 16 9 C 0.17 7.54 1.55 44.18 0.07 7.60 16 10 H 0.00 -0.01 6.78 -2.39 -0.02 -0.03 16 11 C 0.06 2.76 5.97 72.01 0.43 3.19 16 12 O -0.41 -15.54 10.83 -148.98 -1.61 -17.16 16 13 C 0.06 1.85 7.01 72.02 0.50 2.36 16 14 C 0.01 0.43 5.31 86.32 0.46 0.89 16 15 N -0.53 -20.08 4.52 -878.95 -3.97 -24.05 16 16 C 0.11 3.84 4.96 85.55 0.42 4.26 16 17 C -0.17 -5.00 4.90 -19.69 -0.10 -5.10 16 18 C 0.15 3.79 9.30 84.70 0.79 4.58 16 19 N -0.53 -13.17 10.44 -200.04 -2.09 -15.26 16 20 C 0.28 6.67 12.29 180.88 2.22 8.89 16 21 N -0.54 -15.26 10.44 -200.04 -2.09 -17.35 16 22 C 0.16 4.72 11.01 84.70 0.93 5.65 16 23 H 0.26 15.42 8.73 -92.71 -0.81 14.61 16 24 H 0.09 3.85 4.88 -2.39 -0.01 3.84 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.09 2.34 6.06 -2.39 -0.01 2.32 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 3.13 6.12 -2.39 -0.01 3.11 16 31 H 0.05 1.57 8.08 -2.39 -0.02 1.55 16 32 H 0.19 3.59 8.05 -2.91 -0.02 3.56 16 33 H 0.23 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.16 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -62.69 276.12 -0.35 -63.04 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.91 Total: 14.76 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 6.39 Total: 1.56 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -7.85 Total: -111.56 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -1.61 Total: -17.16 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.81 Total: 49.35 kcal Total: -62.69 -0.35 -63.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259957764.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.426 kcal (2) G-P(sol) polarization free energy of solvation -62.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds