Wall clock time and date at job start Mon Mar 30 2020 03:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.38238 * 120.74484 * 264.72075 * 10 9 7 12 12 N 1.32432 * 119.26781 * 179.74084 * 11 10 9 13 13 C 1.32494 * 120.88243 * 0.51906 * 12 11 10 14 14 N 1.38399 * 119.18609 * 179.73071 * 13 12 11 15 15 C 1.48538 * 111.00191 * 242.62795 * 14 13 12 16 16 C 1.54935 * 103.22912 * 159.72198 * 15 14 13 17 17 C 1.54590 * 102.92006 * 322.58598 * 16 15 14 18 18 C 1.47901 * 111.00174 * 0.02562 * 14 13 12 19 19 N 1.32457 * 121.62843 * 359.75766 * 13 12 11 20 20 C 1.32764 * 120.64053 * 359.97372 * 19 13 12 21 21 O 1.35513 * 120.46295 * 180.02562 * 20 19 13 22 22 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.08000 * 120.36820 * 359.97438 * 11 10 9 26 26 H 1.08998 * 110.66481 * 278.16365 * 15 14 13 27 27 H 1.09006 * 110.66491 * 41.28293 * 15 14 13 28 28 H 1.08997 * 110.72080 * 204.22968 * 16 15 14 29 29 H 1.08994 * 110.87313 * 81.01671 * 16 15 14 30 30 H 1.09007 * 110.31447 * 263.04184 * 17 16 15 31 31 H 1.09004 * 110.31181 * 140.87564 * 17 16 15 32 32 H 1.09004 * 109.91808 * 333.51116 * 18 14 13 33 33 H 1.09004 * 109.91607 * 94.80349 * 18 14 13 34 34 H 0.96699 * 114.00178 * 269.97606 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.6063 -4.2529 -1.1825 12 7 3.4729 -5.2537 -1.1490 13 6 3.9725 -5.6825 0.0008 14 7 4.8715 -6.7347 -0.0045 15 6 4.3290 -7.9022 0.7364 16 6 5.1682 -9.0868 0.1951 17 6 5.3400 -8.7340 -1.3001 18 6 5.1209 -7.2119 -1.3821 19 7 3.6325 -5.1293 1.1553 20 6 2.7727 -4.1184 1.1939 21 8 2.4276 -3.5548 2.3770 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 0.8903 24 1 0.6246 -2.5571 -0.8897 25 1 2.2009 -3.9131 -2.1241 26 1 4.4808 -7.7814 1.8090 27 1 3.2722 -8.0442 0.5100 28 1 4.6279 -10.0265 0.3101 29 1 6.1363 -9.1366 0.6934 30 1 4.5948 -9.2563 -1.9002 31 1 6.3447 -8.9902 -1.6363 32 1 4.2586 -6.9942 -2.0123 33 1 6.0110 -6.7298 -1.7866 34 1 1.6584 -3.9629 2.7976 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260064732.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:39 Heat of formation + Delta-G solvation = 21.640480 kcal Electronic energy + Delta-G solvation = -17891.007112 eV Core-core repulsion = 15017.695162 eV Total energy + Delta-G solvation = -2873.311951 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92296 -38.75498 -36.79126 -33.99980 -32.69792 -32.16363 -30.53238 -28.94273 -26.80695 -23.94642 -23.74644 -22.05523 -21.01945 -20.61297 -18.43333 -17.57965 -16.63697 -16.38098 -15.88434 -15.09886 -14.73602 -14.19454 -13.86028 -13.56861 -13.26719 -12.97221 -12.48802 -12.33879 -12.12880 -11.61567 -11.48036 -11.41450 -11.26133 -11.00517 -10.76438 -10.69350 -10.40466 -10.13539 -9.76790 -9.53063 -9.29550 -8.65545 -8.43037 -7.86033 -6.10460 -4.13658 1.44473 1.55671 3.27981 3.33949 3.35821 3.41981 4.09302 4.16012 4.42565 4.45208 4.63970 4.86232 4.90138 5.23537 5.24910 5.27244 5.36926 5.64366 5.66386 5.70342 5.72076 5.87953 5.90976 6.03744 6.14375 6.21304 6.61092 6.71018 7.08372 7.36879 7.47319 7.60558 7.84506 7.96226 8.21226 8.56546 8.89157 9.50459 10.99420 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.043492 B = 0.005006 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.636038 B = 5591.391650 C = 5784.630062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.067 3.933 10 C -0.168 4.168 11 C 0.162 3.838 12 N -0.555 5.555 13 C 0.470 3.530 14 N -0.446 5.446 15 C 0.054 3.946 16 C -0.124 4.124 17 C -0.132 4.132 18 C 0.039 3.961 19 N -0.547 5.547 20 C 0.367 3.633 21 O -0.460 6.460 22 H 0.262 0.738 23 H 0.034 0.966 24 H 0.033 0.967 25 H 0.170 0.830 26 H 0.093 0.907 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.248 -16.140 -0.944 16.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.175 4.175 11 C -0.002 4.002 12 N -0.275 5.275 13 C 0.113 3.887 14 N -0.168 5.168 15 C -0.072 4.072 16 C -0.162 4.162 17 C -0.170 4.170 18 C -0.088 4.088 19 N -0.275 5.275 20 C 0.179 3.821 21 O -0.265 6.265 22 H 0.072 0.928 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.187 0.813 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 6.667 -16.173 -0.753 17.509 hybrid contribution -1.061 1.371 -0.071 1.735 sum 5.606 -14.802 -0.823 15.849 Atomic orbital electron populations 1.69945 1.05980 1.26853 1.50519 1.24952 0.94888 0.99222 0.94977 0.86458 0.80175 0.83326 0.77656 1.19726 1.20891 1.20818 1.20986 0.92917 0.89587 1.51047 0.92710 1.18113 0.91760 0.88486 0.98711 1.22466 1.01727 1.00382 0.92883 1.22895 0.90016 0.88811 0.98463 1.68147 1.13164 1.16993 1.29237 1.20547 0.90180 0.94142 0.83843 1.61359 1.36160 1.05169 1.14110 1.23181 0.96977 0.87426 0.99637 1.22522 1.00733 0.97287 0.95685 1.22454 1.02379 0.95444 0.96729 1.22912 1.03472 0.93900 0.88549 1.67283 1.16876 1.12776 1.30595 1.19090 0.89461 0.87028 0.86524 1.84810 1.51999 1.56555 1.33138 0.92812 0.94746 0.94888 0.81316 0.88881 0.93258 0.90641 0.90392 0.91214 0.90782 0.89666 0.90023 0.74554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.03 9.09 -34.44 -0.31 -14.34 16 8 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.07 1.64 4.89 -29.03 -0.14 1.50 16 10 C -0.17 -3.59 5.12 -104.19 -0.53 -4.12 16 11 C 0.16 3.12 10.97 -17.29 -0.19 2.93 16 12 N -0.56 -10.34 8.14 -14.00 -0.11 -10.45 16 13 C 0.47 8.82 6.98 -322.86 -2.25 6.57 16 14 N -0.45 -7.01 5.35 -171.43 -0.92 -7.93 16 15 C 0.05 0.68 6.31 -1.90 -0.01 0.67 16 16 C -0.12 -1.15 7.06 -24.87 -0.18 -1.33 16 17 C -0.13 -1.24 6.93 -25.38 -0.18 -1.42 16 18 C 0.04 0.51 6.33 -2.75 -0.02 0.49 16 19 N -0.55 -11.01 10.24 -13.99 -0.14 -11.15 16 20 C 0.37 7.63 7.80 -16.72 -0.13 7.50 16 21 O -0.46 -8.98 12.83 -18.23 -0.23 -9.22 16 22 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 23 H 0.03 0.87 7.78 -51.93 -0.40 0.47 16 24 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 25 H 0.17 2.86 8.06 -52.49 -0.42 2.44 16 26 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.05 0.64 7.99 -51.93 -0.42 0.22 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.59 8.14 -51.92 -0.42 0.16 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.20 6.46 -51.93 -0.34 0.86 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.40 5.48 9.06 45.56 0.41 5.89 16 LS Contribution 289.97 15.07 4.37 4.37 Total: -1.00 -32.13 289.97 -9.03 -41.15 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -3.66 Total: 1.53 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -4.04 Total: 0.05 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.44 Total: -54.48 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -0.23 Total: -9.22 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.13 -9.03 -41.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260064732.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.792 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds