Wall clock time and date at job start Mon Mar 30 2020 04:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46933 * 2 1 4 4 C 1.50700 * 109.46829 * 119.99724 * 2 1 3 5 5 C 1.40106 * 125.79934 * 275.00227 * 4 2 1 6 6 C 1.34959 * 107.67107 * 180.02562 * 5 4 2 7 7 N 1.36101 * 107.78661 * 0.07084 * 6 5 4 8 8 N 1.31224 * 125.79585 * 95.02730 * 4 2 1 9 9 C 1.46452 * 122.63514 * 179.82895 * 7 6 5 10 10 C 1.53073 * 108.74311 * 330.38363 * 9 7 6 11 11 H 1.08993 * 109.10736 * 283.87698 * 10 9 7 12 12 C 1.50704 * 109.05118 * 164.80238 * 10 9 7 13 13 H 1.07997 * 120.00260 * 358.19111 * 12 10 9 14 14 C 1.37881 * 119.99780 * 178.18561 * 12 10 9 15 15 N 1.31515 * 120.00010 * 359.97438 * 14 12 10 16 16 Si 1.86799 * 119.99842 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46837 * 90.00053 * 16 14 12 18 18 H 1.48498 * 109.47159 * 209.99790 * 16 14 12 19 19 H 1.48497 * 109.47063 * 329.99966 * 16 14 12 20 20 C 1.50271 * 111.34584 * 44.35968 * 10 9 7 21 21 O 1.21288 * 119.23946 * 144.09601 * 20 10 9 22 22 N 1.35227 * 121.52452 * 324.07010 * 20 10 9 23 23 H 1.08996 * 109.47232 * 299.99945 * 1 2 3 24 24 H 1.08997 * 109.47137 * 60.00281 * 1 2 3 25 25 H 1.09001 * 109.46775 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47232 * 240.00054 * 2 1 3 27 27 H 1.08999 * 109.46552 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.46980 * 299.99815 * 3 2 1 29 29 H 1.09007 * 109.46710 * 60.00018 * 3 2 1 30 30 H 1.07998 * 126.16818 * 359.96835 * 5 4 2 31 31 H 1.08990 * 109.59264 * 210.60778 * 9 7 6 32 32 H 1.08995 * 109.71201 * 90.23380 * 9 7 6 33 33 H 0.97002 * 119.99904 * 180.02562 * 15 14 12 34 34 H 0.97003 * 121.24347 * 185.83398 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2120 -0.1328 2.4943 6 6 2.6745 -1.0934 3.3217 7 7 2.7856 -2.2435 2.6025 8 7 2.3760 -1.9749 1.3002 9 6 3.2651 -3.4976 3.1874 10 6 4.2403 -3.1704 4.3210 11 1 5.1953 -2.8656 3.8932 12 6 4.4481 -4.4034 5.1624 13 1 3.9143 -5.3127 4.9289 14 6 5.3198 -4.3704 6.2302 15 7 5.9702 -3.2632 6.5141 16 14 5.5779 -5.8988 7.2727 17 1 6.6923 -6.7012 6.7073 18 1 5.9117 -5.4989 8.6633 19 1 4.3349 -6.7113 7.2761 20 6 3.7156 -2.0637 5.1916 21 8 3.9312 -2.0956 6.3847 22 7 3.0091 -1.0326 4.6754 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 2.0166 0.8960 2.7585 31 1 3.7755 -4.0851 2.4244 32 1 2.4224 -4.0649 3.5826 33 1 6.5837 -3.2401 7.2651 34 1 2.7441 -0.2789 5.2255 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260109766.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:42 Heat of formation + Delta-G solvation = 41.629418 kcal Electronic energy + Delta-G solvation = -18251.162911 eV Core-core repulsion = 15378.717745 eV Total energy + Delta-G solvation = -2872.445166 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23664 -38.51315 -35.75376 -34.07694 -33.74325 -31.97532 -28.85692 -28.53953 -27.03672 -25.01724 -23.32332 -22.42169 -21.28501 -19.20341 -17.89238 -17.42880 -16.37403 -16.03165 -15.17487 -14.70680 -14.53437 -14.22248 -13.98165 -13.71610 -13.17461 -12.92656 -12.77444 -12.33909 -12.05952 -11.82587 -11.37658 -11.25801 -11.04354 -10.95214 -10.79080 -10.73031 -10.22274 -10.05812 -9.89451 -9.55074 -8.75826 -8.43367 -8.26762 -7.56249 -6.16375 -4.26354 2.33911 2.88658 3.10175 3.25576 3.33162 3.35760 3.75786 3.98711 4.34840 4.72427 4.98636 5.17706 5.25082 5.36703 5.55202 5.66264 5.71831 5.82362 5.86323 5.91672 5.96405 5.98931 6.12343 6.20895 6.30413 6.31685 6.46310 6.97032 7.07248 7.15167 7.51030 7.70124 7.83221 8.11830 8.30410 8.69563 9.26613 9.42043 10.92394 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.052185 B = 0.005476 C = 0.005191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.426993 B = 5111.976720 C = 5392.767797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.011 4.011 3 C -0.141 4.141 4 C 0.087 3.913 5 C -0.313 4.313 6 C 0.336 3.664 7 N -0.383 5.383 8 N -0.296 5.296 9 C 0.140 3.860 10 C 0.030 3.970 11 H 0.069 0.931 12 C -0.544 4.544 13 H 0.069 0.931 14 C 0.085 3.915 15 N -0.842 5.842 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.501 3.499 21 O -0.454 6.454 22 N -0.673 5.673 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.142 0.858 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.263 0.737 34 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.473 6.975 -9.816 14.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.031 4.031 3 C -0.198 4.198 4 C -0.080 4.080 5 C -0.346 4.346 6 C 0.113 3.887 7 N -0.170 5.170 8 N -0.119 5.119 9 C 0.021 3.979 10 C 0.008 3.992 11 H 0.087 0.913 12 C -0.581 4.581 13 H 0.087 0.913 14 C -0.124 4.124 15 N -0.475 5.475 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C 0.288 3.712 21 O -0.318 6.318 22 N -0.328 5.328 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.910 5.580 -9.545 13.038 hybrid contribution 0.051 0.446 1.420 1.489 sum -6.859 6.026 -8.125 12.222 Atomic orbital electron populations 1.21785 0.94152 1.02103 1.01733 1.19426 0.95487 0.94978 0.93232 1.21795 1.01429 0.94843 1.01781 1.21995 0.99464 0.91383 0.95158 1.20117 1.22007 0.99716 0.92730 1.18243 0.97355 0.88430 0.84700 1.49075 1.52660 1.08794 1.06516 1.77102 1.22345 1.16111 0.96300 1.22131 0.98443 0.81552 0.95815 1.19124 0.94620 0.94376 0.91128 0.91326 1.20485 1.28242 0.94774 1.14633 0.91254 1.24896 0.94687 0.96120 0.96684 1.70002 1.24312 1.25757 1.27399 0.86406 0.78565 0.82361 0.79519 1.20459 1.21060 1.19675 1.22596 0.76154 0.81793 0.90633 1.90692 1.50751 1.74897 1.15497 1.44225 1.56774 1.25514 1.06276 0.92342 0.92364 0.92540 0.90065 0.92386 0.92419 0.92151 0.84003 0.88681 0.90248 0.92669 0.75581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.18 37.16 0.34 -1.10 16 2 C -0.01 -0.13 3.38 -91.77 -0.31 -0.44 16 3 C -0.14 -1.40 8.78 37.16 0.33 -1.07 16 4 C 0.09 1.40 6.13 -82.15 -0.50 0.90 16 5 C -0.31 -5.15 9.98 -40.05 -0.40 -5.55 16 6 C 0.34 6.44 7.66 -152.70 -1.17 5.27 16 7 N -0.38 -7.68 4.06 -60.45 -0.25 -7.92 16 8 N -0.30 -5.60 12.65 33.78 0.43 -5.17 16 9 C 0.14 2.87 6.65 -4.03 -0.03 2.84 16 10 C 0.03 0.73 2.43 -93.09 -0.23 0.50 16 11 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 12 C -0.54 -14.29 8.31 -34.44 -0.29 -14.58 16 13 H 0.07 1.74 7.73 -52.49 -0.41 1.33 16 14 C 0.09 2.33 4.73 -17.82 -0.08 2.24 16 15 N -0.84 -24.24 10.81 55.43 0.60 -23.64 16 16 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 C 0.50 12.22 7.30 -10.99 -0.08 12.14 16 21 O -0.45 -12.69 14.04 5.55 0.08 -12.61 16 22 N -0.67 -13.46 5.57 -11.54 -0.06 -13.52 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.58 7.30 -51.92 -0.38 0.20 16 30 H 0.14 1.95 7.43 -52.49 -0.39 1.56 16 31 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 32 H 0.08 1.58 8.03 -51.93 -0.42 1.16 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.41 7.00 8.95 -40.82 -0.37 6.64 16 LS Contribution 285.41 15.07 4.30 4.30 Total: -1.00 -30.82 285.41 -6.82 -37.64 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.47 Total: 3.74 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.42 Total: 1.15 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 0.72 Total: -50.26 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.08 Total: -12.61 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.82 -6.82 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260109766.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.268 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds