Wall clock time and date at job start Mon Mar 30 2020 04:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39674 * 126.06753 * 2 1 4 4 C 1.38412 * 105.35425 * 180.02562 * 3 2 1 5 5 C 1.47168 * 126.87934 * 179.97438 * 4 3 2 6 6 O 1.21624 * 120.00170 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99533 * 179.97438 * 5 4 3 8 8 C 1.47014 * 125.65130 * 0.02562 * 7 5 4 9 9 C 1.54326 * 107.27329 * 181.02280 * 8 7 5 10 10 C 1.55160 * 102.94048 * 22.19805 * 9 8 7 11 11 H 1.08997 * 111.00463 * 82.60403 * 10 9 8 12 12 C 1.50696 * 111.00196 * 206.42545 * 10 9 8 13 13 H 1.07993 * 120.00483 * 359.97438 * 12 10 9 14 14 C 1.37878 * 119.99576 * 180.02562 * 12 10 9 15 15 N 1.31509 * 120.00580 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99715 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47461 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47407 * 120.00052 * 16 14 12 19 19 H 1.48506 * 109.46914 * 239.99795 * 16 14 12 20 20 C 1.47429 * 125.64426 * 179.72062 * 7 5 4 21 21 N 1.36596 * 106.23431 * 359.97438 * 4 3 2 22 22 H 0.97001 * 125.18712 * 179.97438 * 21 4 3 23 23 N 1.28443 * 109.61761 * 0.26916 * 21 4 3 24 24 H 1.08996 * 109.47547 * 89.99776 * 1 2 3 25 25 H 1.08994 * 109.47295 * 210.00333 * 1 2 3 26 26 H 1.09002 * 109.46961 * 330.00034 * 1 2 3 27 27 H 1.07995 * 127.32437 * 359.96089 * 3 2 1 28 28 H 1.08997 * 109.88645 * 300.44573 * 8 7 5 29 29 H 1.09005 * 109.88401 * 61.45400 * 8 7 5 30 30 H 1.08995 * 110.71756 * 140.55869 * 9 8 7 31 31 H 1.08998 * 110.72012 * 263.65719 * 9 8 7 32 32 H 0.96993 * 120.00911 * 180.02562 * 15 14 12 33 33 H 1.09003 * 110.35916 * 274.74477 * 20 7 5 34 34 H 1.09001 * 110.36730 * 37.06396 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3293 1.1290 0.0000 4 6 3.6240 0.6395 -0.0006 5 6 4.8665 1.4282 -0.0014 6 8 4.8154 2.6434 -0.0020 7 7 6.0609 0.8038 -0.0014 8 6 6.2669 -0.6518 -0.0012 9 6 7.7900 -0.8991 0.0250 10 6 8.3471 0.4259 0.6094 11 1 8.2880 0.4283 1.6978 12 6 9.7610 0.6677 0.1474 13 1 10.2449 -0.0438 -0.5052 14 6 10.4370 1.7967 0.5587 15 7 9.8479 2.6629 1.3538 16 14 12.1899 2.0960 -0.0134 17 1 12.6204 0.9809 -0.8943 18 1 12.2535 3.3747 -0.7658 19 1 13.0896 2.1703 1.1658 20 6 7.3773 1.4676 -0.0079 21 7 3.5173 -0.7223 -0.0003 22 1 4.2640 -1.3415 -0.0010 23 7 2.2775 -1.0578 -0.0053 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 2.0207 2.1639 -0.0006 28 1 5.8046 -1.0916 0.8825 29 1 5.8337 -1.0877 -0.9015 30 1 8.0330 -1.7395 0.6751 31 1 8.1704 -1.0697 -0.9821 32 1 10.3234 3.4573 1.6429 33 1 7.6753 1.7089 -1.0283 34 1 7.3505 2.3695 0.6037 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260139830.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:18 Heat of formation + Delta-G solvation = 36.499929 kcal Electronic energy + Delta-G solvation = -17925.099396 eV Core-core repulsion = 15052.431799 eV Total energy + Delta-G solvation = -2872.667597 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.49711 -39.23238 -36.89293 -33.50510 -32.82636 -31.14606 -30.31658 -28.63871 -27.59814 -25.36954 -23.65371 -21.64912 -20.55682 -20.22132 -19.67692 -17.38306 -16.75393 -15.98537 -15.73666 -15.31424 -14.85099 -14.51636 -13.73861 -13.60895 -13.17423 -12.95311 -12.88933 -12.59758 -12.50260 -12.02207 -11.98204 -11.58087 -11.05150 -10.77854 -10.68173 -10.63650 -10.08007 -9.74425 -9.45856 -9.16666 -9.09941 -9.04701 -8.63131 -8.10621 -6.19102 -4.25359 1.41628 2.56747 2.86860 3.21683 3.30965 3.33180 3.38980 3.50969 4.31268 4.52540 4.68869 5.04412 5.08608 5.13496 5.25588 5.40235 5.51036 5.55060 5.69690 5.75045 5.91602 6.06548 6.24164 6.52359 6.55434 6.65155 6.77693 6.79471 7.00174 7.28368 7.54729 7.79103 7.93508 8.02086 8.15852 8.46137 8.78627 9.41661 10.90523 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.054019 B = 0.004842 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.207899 B = 5781.485232 C = 6174.266712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.020 3.980 3 C -0.163 4.163 4 C -0.020 4.020 5 C 0.591 3.409 6 O -0.528 6.528 7 N -0.610 5.610 8 C 0.085 3.915 9 C -0.125 4.125 10 C 0.047 3.953 11 H 0.045 0.955 12 C -0.521 4.521 13 H 0.063 0.937 14 C 0.065 3.935 15 N -0.884 5.884 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.116 3.884 21 N -0.382 5.382 22 H 0.444 0.556 23 N -0.281 5.281 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.163 0.837 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.265 0.735 33 H 0.059 0.941 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.516 -6.970 -2.399 14.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.138 4.138 3 C -0.192 4.192 4 C -0.149 4.149 5 C 0.377 3.623 6 O -0.403 6.403 7 N -0.343 5.343 8 C -0.039 4.039 9 C -0.163 4.163 10 C 0.028 3.972 11 H 0.063 0.937 12 C -0.559 4.559 13 H 0.081 0.919 14 C -0.138 4.138 15 N -0.520 5.520 16 Si 0.723 3.277 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.004 4.004 21 N -0.103 5.103 22 H 0.295 0.705 23 N -0.116 5.116 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.181 0.819 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.575 -7.232 -2.305 14.688 hybrid contribution 1.400 0.724 -0.268 1.599 sum -11.175 -6.507 -2.573 13.185 Atomic orbital electron populations 1.20064 0.86492 1.03113 1.02670 1.22047 0.97167 0.88802 1.05796 1.22025 0.89662 1.00452 1.07047 1.22019 0.96739 0.84383 1.11754 1.16669 0.80865 0.86614 0.78105 1.90821 1.86066 1.12372 1.51075 1.48878 1.07048 1.07621 1.70774 1.22253 1.00750 0.81918 0.98966 1.22732 0.90204 1.01154 1.02219 1.19917 0.93570 0.87307 0.96418 0.93668 1.20976 0.96877 1.07198 1.30832 0.91869 1.25055 0.98342 0.95950 0.94486 1.69943 1.37389 1.11413 1.33289 0.86472 0.84286 0.78293 0.78608 1.19642 1.20845 1.20886 1.22950 0.77411 0.98946 1.01082 1.44336 1.06580 1.05942 1.53430 0.70534 1.73032 0.90026 1.27839 1.20680 0.90918 0.91080 0.90541 0.81950 0.92476 0.92624 0.91183 0.90988 0.92557 0.92294 0.89734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.45 36.01 0.38 -0.21 16 2 C 0.02 0.27 7.22 -82.47 -0.60 -0.33 16 3 C -0.16 -2.43 10.78 -38.98 -0.42 -2.85 16 4 C -0.02 -0.33 6.98 -82.06 -0.57 -0.90 16 5 C 0.59 11.77 7.84 -12.63 -0.10 11.67 16 6 O -0.53 -12.26 17.17 5.26 0.09 -12.17 16 7 N -0.61 -11.91 3.32 -171.74 -0.57 -12.48 16 8 C 0.08 1.31 5.13 -3.07 -0.02 1.30 16 9 C -0.13 -2.19 6.39 -24.89 -0.16 -2.34 16 10 C 0.05 1.08 2.86 -89.50 -0.26 0.82 16 11 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 12 C -0.52 -13.21 8.50 -34.44 -0.29 -13.51 16 13 H 0.06 1.56 7.76 -52.49 -0.41 1.15 16 14 C 0.07 1.72 5.37 -17.82 -0.10 1.62 16 15 N -0.88 -24.53 12.55 55.43 0.70 -23.84 16 16 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.12 2.68 5.90 -2.40 -0.01 2.67 16 21 N -0.38 -5.47 6.51 33.48 0.22 -5.26 16 22 H 0.44 5.40 4.98 -190.45 -0.95 4.45 16 23 N -0.28 -4.04 12.14 33.64 0.41 -3.63 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.16 2.21 8.06 -52.49 -0.42 1.79 16 28 H 0.06 0.77 7.12 -51.93 -0.37 0.40 16 29 H 0.06 0.72 7.25 -51.93 -0.38 0.34 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.23 8.02 -51.93 -0.42 0.82 16 32 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.06 1.40 8.03 -51.93 -0.42 0.99 16 34 H 0.08 2.23 7.64 -51.93 -0.40 1.83 16 LS Contribution 287.87 15.07 4.34 4.34 Total: -1.00 -30.21 287.87 -6.99 -37.20 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.00 Total: 2.61 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.14 Total: -2.07 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.75 Total: -45.21 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.21 -6.99 -37.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139830.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.697 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds