Wall clock time and date at job start Mon Mar 30 2020 03:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.47212 * 179.97438 * 10 9 7 12 12 C 1.38536 * 119.99947 * 179.97438 * 11 10 9 13 13 N 1.32991 * 120.56513 * 0.02562 * 12 11 10 14 14 C 1.31745 * 120.61972 * 179.97438 * 13 12 11 15 15 N 1.31747 * 121.85565 * 0.14865 * 14 13 12 16 16 C 1.32793 * 120.99621 * 359.91604 * 15 14 13 17 17 C 1.37559 * 119.13774 * 359.60934 * 16 15 14 18 18 C 1.50351 * 121.83230 * 180.24339 * 17 16 15 19 19 O 1.42829 * 110.18811 * 344.42122 * 18 17 16 20 20 C 1.43197 * 113.20241 * 51.26226 * 19 18 17 21 21 C 1.50577 * 119.51203 * 179.69562 * 16 15 14 22 22 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 0.96996 * 119.99606 * 0.02562 * 11 10 9 28 28 H 1.08002 * 119.07322 * 180.13276 * 14 13 12 29 29 H 1.08999 * 109.49968 * 224.08961 * 18 17 16 30 30 H 1.09000 * 109.05035 * 104.46191 * 18 17 16 31 31 H 1.08994 * 109.61101 * 169.87164 * 20 19 18 32 32 H 1.09004 * 109.61365 * 49.34300 * 20 19 18 33 33 H 1.08998 * 109.43679 * 283.15762 * 21 16 15 34 34 H 1.09004 * 109.43122 * 43.02570 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 7 5.4867 -2.6364 0.0022 12 6 6.1794 -3.8362 0.0037 13 7 5.5259 -4.9944 0.0047 14 6 6.1835 -6.1360 0.0056 15 7 7.5003 -6.1799 0.0085 16 6 8.2217 -5.0650 0.0090 17 6 7.5768 -3.8499 -0.0018 18 6 8.3334 -2.5507 -0.0074 19 8 9.6958 -2.7720 0.3598 20 6 10.3236 -3.8101 -0.4011 21 6 9.7248 -5.1541 0.0193 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 5.9716 -1.7964 0.0019 28 1 5.6276 -7.0619 0.0042 29 1 7.8758 -1.8601 0.7010 30 1 8.2942 -2.1204 -1.0081 31 1 11.3958 -3.8099 -0.2051 32 1 10.1432 -3.6453 -1.4634 33 1 10.0663 -5.4052 1.0234 34 1 10.0469 -5.9284 -0.6770 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260151431.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:38 Heat of formation + Delta-G solvation = -25.384075 kcal Electronic energy + Delta-G solvation = -17658.010062 eV Core-core repulsion = 14782.658973 eV Total energy + Delta-G solvation = -2875.351089 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.31760 -39.38724 -38.03827 -35.43328 -34.49609 -33.43995 -32.07251 -31.09858 -27.30468 -26.84754 -25.37363 -23.57702 -22.77876 -21.90155 -19.21897 -19.07118 -18.35930 -17.53923 -16.92909 -16.33490 -16.17581 -16.10239 -15.78677 -15.52070 -15.31739 -14.67771 -14.48544 -14.38885 -13.66291 -13.41434 -13.23942 -12.96584 -12.52290 -12.37046 -12.08507 -11.89223 -11.76397 -11.53689 -11.46987 -10.79976 -10.73670 -10.57623 -10.17150 -9.10423 -8.31576 -6.38586 -0.00967 0.31963 1.37308 1.39575 1.50460 2.05563 2.34815 2.75854 2.84760 3.03578 3.16380 3.29828 3.55695 3.85567 3.96379 4.14469 4.24812 4.33399 4.36476 4.43350 4.48455 4.64784 4.73006 4.80775 4.88382 5.03144 5.13741 5.37898 5.40216 5.53953 5.77237 5.98273 6.08551 6.20249 6.58130 6.70774 7.26042 7.30437 8.85050 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033169 B = 0.004923 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.960165 B = 5685.762307 C = 6478.615709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.536 4.536 8 H 0.032 0.968 9 C -0.016 4.016 10 C 0.159 3.841 11 N -0.698 5.698 12 C 0.434 3.566 13 N -0.605 5.605 14 C 0.331 3.669 15 N -0.577 5.577 16 C 0.196 3.804 17 C -0.302 4.302 18 C 0.121 3.879 19 O -0.384 6.384 20 C 0.057 3.943 21 C -0.100 4.100 22 H 0.268 0.732 23 H 0.033 0.967 24 H 0.033 0.967 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.418 0.582 28 H 0.219 0.781 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.241 -6.523 -1.271 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.163 1.163 7 C -0.575 4.575 8 H 0.050 0.950 9 C -0.053 4.053 10 C 0.036 3.964 11 N -0.330 5.330 12 C 0.189 3.811 13 N -0.330 5.330 14 C 0.042 3.958 15 N -0.296 5.296 16 C 0.055 3.945 17 C -0.313 4.313 18 C 0.043 3.957 19 O -0.303 6.303 20 C -0.020 4.020 21 C -0.138 4.138 22 H 0.077 0.923 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.257 0.743 28 H 0.235 0.765 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.152 0.848 32 H 0.084 0.916 33 H 0.121 0.879 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 22.476 -7.124 -1.121 23.605 hybrid contribution -0.452 1.294 -0.141 1.378 sum 22.024 -5.830 -1.262 22.818 Atomic orbital electron populations 1.70064 1.08492 1.28407 1.51953 1.26026 0.95636 1.03677 0.93727 0.85594 0.79636 0.77689 0.79312 1.18987 1.21208 1.16289 1.21204 0.91345 0.93443 1.51469 0.94964 1.19668 0.94659 0.93210 0.97791 1.21010 0.77191 0.97996 1.00234 1.44812 1.06924 1.04505 1.76803 1.18653 0.88051 0.87257 0.87165 1.68094 1.42167 0.98654 1.24129 1.25176 0.87655 0.95518 0.87465 1.68431 1.08439 1.31336 1.21432 1.21385 0.98212 0.87006 0.87911 1.21175 0.93230 0.99994 1.16868 1.21102 0.81401 0.91433 1.01807 1.88076 1.23530 1.56243 1.62417 1.22927 0.99051 0.84342 0.95680 1.21174 0.86365 1.00866 1.05357 0.92313 0.94882 0.94892 0.93396 0.93556 0.74335 0.76503 0.87678 0.90401 0.84759 0.91619 0.87865 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.96 42.20 27.47 68.60 1.88 44.08 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.24 -9.49 6.54 99.48 0.65 -8.84 16 7 C -0.54 -30.24 9.66 25.60 0.25 -30.00 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 9 C -0.02 -0.68 4.16 29.85 0.12 -0.56 16 10 C 0.16 6.32 5.67 86.38 0.49 6.81 16 11 N -0.70 -22.12 5.61 -344.48 -1.93 -24.05 16 12 C 0.43 13.74 7.49 133.19 1.00 14.74 16 13 N -0.60 -20.34 9.71 -197.55 -1.92 -22.25 16 14 C 0.33 9.32 12.28 180.91 2.22 11.54 16 15 N -0.58 -15.72 10.36 -188.75 -1.95 -17.67 16 16 C 0.20 4.91 6.68 42.21 0.28 5.19 16 17 C -0.30 -7.97 5.82 -19.77 -0.12 -8.08 16 18 C 0.12 2.51 5.91 71.13 0.42 2.94 16 19 O -0.38 -7.70 10.81 -148.98 -1.61 -9.31 16 20 C 0.06 0.77 6.84 71.99 0.49 1.27 16 21 C -0.10 -1.63 6.27 29.82 0.19 -1.44 16 22 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 23 H 0.03 1.39 7.20 -2.39 -0.02 1.37 16 24 H 0.03 1.36 7.57 -2.39 -0.02 1.34 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.42 10.95 6.81 -92.71 -0.63 10.32 16 28 H 0.22 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.11 2.07 7.30 -2.39 -0.02 2.05 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.82 8.08 -2.39 -0.02 0.80 16 33 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -70.14 285.08 1.00 -69.13 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.43 Total: 15.30 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 5.81 Total: 3.25 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -5.51 Total: -122.46 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -1.61 Total: -9.31 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.88 Total: 44.08 kcal Total: -70.14 1.00 -69.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260151431.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.749 kcal (2) G-P(sol) polarization free energy of solvation -70.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds