Wall clock time and date at job start Mon Mar 30 2020 03:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32241 * 120.41837 * 2 1 4 4 C 1.32522 * 120.69101 * 180.02562 * 3 2 1 5 5 N 1.38437 * 119.21288 * 180.13343 * 4 3 2 6 6 C 1.46500 * 119.99609 * 179.97438 * 5 4 3 7 7 C 1.36978 * 120.00394 * 359.97438 * 5 4 3 8 8 H 1.08007 * 120.00077 * 22.48837 * 7 5 4 9 9 C 1.38833 * 120.00523 * 202.49370 * 7 5 4 10 10 N 1.31540 * 119.99494 * 11.07388 * 9 7 5 11 11 Si 1.86799 * 120.00324 * 191.08089 * 9 7 5 12 12 H 1.48500 * 109.47034 * 89.99360 * 11 9 7 13 13 H 1.48497 * 109.47441 * 209.99625 * 11 9 7 14 14 H 1.48502 * 109.47029 * 329.99622 * 11 9 7 15 15 N 1.32512 * 121.56921 * 0.10549 * 4 3 2 16 16 C 1.32442 * 120.73171 * 359.94178 * 15 4 3 17 17 C 1.38167 * 119.17289 * 359.61274 * 16 15 4 18 18 C 1.50385 * 121.70726 * 180.20224 * 17 16 15 19 19 O 1.42819 * 110.18532 * 344.46450 * 18 17 16 20 20 C 1.43197 * 113.23301 * 51.35397 * 19 18 17 21 21 C 1.50578 * 119.50580 * 179.73447 * 16 15 4 22 22 H 1.09005 * 109.47226 * 90.00567 * 1 2 3 23 23 H 1.09006 * 109.46522 * 209.99859 * 1 2 3 24 24 H 1.08995 * 109.47375 * 329.99763 * 1 2 3 25 25 H 1.09000 * 109.47111 * 93.91378 * 6 5 4 26 26 H 1.08998 * 109.47081 * 213.91397 * 6 5 4 27 27 H 1.08995 * 109.47487 * 333.91682 * 6 5 4 28 28 H 0.97008 * 119.99751 * 180.02562 * 10 9 7 29 29 H 1.08997 * 109.51060 * 224.13144 * 18 17 16 30 30 H 1.08993 * 109.04176 * 104.50484 * 18 17 16 31 31 H 1.09003 * 109.60704 * 169.66377 * 20 19 18 32 32 H 1.09000 * 109.75706 * 49.23009 * 20 19 18 33 33 H 1.09004 * 109.44124 * 283.13349 * 21 16 15 34 34 H 1.09003 * 109.43928 * 43.02275 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1765 1.1404 0.0000 4 6 3.5017 1.1467 -0.0005 5 7 4.1716 2.3582 0.0023 6 6 5.6364 2.3852 0.0024 7 6 3.4650 3.5316 0.0051 8 1 2.4460 3.5476 0.3629 9 6 4.0584 4.7005 -0.4522 10 7 5.2097 4.6490 -1.0862 11 14 3.2220 6.3462 -0.1668 12 1 3.6773 6.9151 1.1272 13 1 3.5738 7.2779 -1.2683 14 1 1.7499 6.1539 -0.1323 15 7 4.2008 0.0210 -0.0031 16 6 3.5908 -1.1546 -0.0041 17 6 2.2098 -1.1967 0.0057 18 6 1.4588 -2.4996 0.0096 19 8 2.3290 -3.5711 -0.3569 20 6 3.5400 -3.6016 0.4067 21 6 4.4123 -2.4164 -0.0132 22 1 -0.3634 -0.0001 -1.0277 23 1 -0.3632 -0.8901 0.5139 24 1 -0.3634 0.8899 0.5138 25 1 5.9983 2.4644 -1.0227 26 1 5.9839 3.2432 0.5778 27 1 6.0167 1.4680 0.4520 28 1 5.6246 5.4657 -1.4054 29 1 0.6330 -2.4459 -0.6998 30 1 1.0648 -2.6799 1.0097 31 1 4.0712 -4.5336 0.2130 32 1 3.3078 -3.5268 1.4690 33 1 4.8007 -2.5894 -1.0169 34 1 5.2438 -2.3130 0.6841 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260276092.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:51 Heat of formation + Delta-G solvation = 17.148937 kcal Electronic energy + Delta-G solvation = -18341.254572 eV Core-core repulsion = 15467.747854 eV Total energy + Delta-G solvation = -2873.506719 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30254 -38.03582 -36.05588 -33.99034 -32.48641 -30.85956 -30.53267 -28.08788 -26.40632 -25.48922 -23.97648 -23.15597 -20.52229 -20.12260 -17.78270 -16.70193 -16.19677 -16.04573 -15.29059 -14.75396 -14.45322 -14.23519 -13.46992 -13.29780 -13.19529 -13.02456 -12.70117 -12.36179 -11.87991 -11.75818 -11.43902 -11.37025 -11.25692 -10.95409 -10.85512 -10.47411 -10.42871 -10.15887 -9.41399 -9.29991 -9.17587 -8.67821 -7.91187 -7.11064 -6.47444 -3.88384 2.12927 2.24035 3.12477 3.15060 3.20256 3.89747 4.13031 4.41539 4.62279 4.87350 5.09654 5.10358 5.32160 5.39689 5.56461 5.58321 5.75265 5.78234 5.87357 5.93737 6.01125 6.06282 6.15610 6.31172 6.52855 6.62372 6.77080 6.88674 7.22230 7.30254 7.39146 7.43269 7.87924 8.27170 8.42966 9.04206 9.23835 9.78418 10.51608 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.035551 B = 0.006380 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.415576 B = 4387.464054 C = 5077.995434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.229 3.771 3 N -0.567 5.567 4 C 0.501 3.499 5 N -0.389 5.389 6 C 0.130 3.870 7 C -0.287 4.287 8 H 0.109 0.891 9 C 0.026 3.974 10 N -0.870 5.870 11 Si 0.937 3.063 12 H -0.276 1.276 13 H -0.282 1.282 14 H -0.266 1.266 15 N -0.596 5.596 16 C 0.234 3.766 17 C -0.372 4.372 18 C 0.140 3.860 19 O -0.383 6.383 20 C 0.066 3.934 21 C -0.100 4.100 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.272 0.728 29 H 0.089 0.911 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 -10.112 2.975 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.074 3.926 3 N -0.292 5.292 4 C 0.148 3.852 5 N -0.080 5.080 6 C -0.013 4.013 7 C -0.417 4.417 8 H 0.127 0.873 9 C -0.180 4.180 10 N -0.506 5.506 11 Si 0.763 3.237 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.190 1.190 15 N -0.322 5.322 16 C 0.081 3.919 17 C -0.386 4.386 18 C 0.063 3.937 19 O -0.301 6.301 20 C -0.011 4.011 21 C -0.138 4.138 22 H 0.095 0.905 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.980 -8.747 2.727 9.635 hybrid contribution -0.512 0.443 0.154 0.694 sum -3.492 -8.304 2.881 9.458 Atomic orbital electron populations 1.20675 0.89756 1.02755 1.02673 1.20929 0.95796 0.87416 0.88504 1.67704 1.08138 1.28993 1.24370 1.19175 0.84970 0.86064 0.94961 1.42375 1.05320 1.00701 1.59592 1.21459 0.78511 0.99203 1.02149 1.19924 0.99522 0.83093 1.39168 0.87312 1.25520 0.96701 1.00491 0.95257 1.70108 1.17093 1.29318 1.34113 0.85739 0.79705 0.80219 0.78014 1.20140 1.20710 1.19049 1.67672 1.40336 0.97313 1.26915 1.20358 0.90207 0.92382 0.88914 1.20450 0.95501 0.96717 1.25900 1.20855 0.91052 0.82851 0.98985 1.87981 1.30621 1.49803 1.61720 1.22531 0.85704 0.97716 0.95150 1.20945 0.98117 0.91189 1.03587 0.90543 0.91161 0.90629 0.92142 0.91680 0.93699 0.91817 0.89329 0.93775 0.88667 0.92952 0.89413 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 9.51 36.00 0.34 -1.18 16 2 C 0.23 4.67 6.83 -82.22 -0.56 4.11 16 3 N -0.57 -14.03 9.17 -10.10 -0.09 -14.13 16 4 C 0.50 13.04 8.13 -322.70 -2.62 10.42 16 5 N -0.39 -10.50 3.11 -124.46 -0.39 -10.89 16 6 C 0.13 3.23 8.73 59.85 0.52 3.75 16 7 C -0.29 -7.87 9.29 -15.03 -0.14 -8.01 16 8 H 0.11 3.01 7.32 -52.48 -0.38 2.62 16 9 C 0.03 0.67 5.13 -17.46 -0.09 0.58 16 10 N -0.87 -23.20 10.58 55.49 0.59 -22.61 16 11 Si 0.94 20.21 29.57 -169.99 -5.03 15.19 16 12 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 14 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 15 N -0.60 -14.23 8.97 -10.25 -0.09 -14.33 16 16 C 0.23 4.78 6.68 -82.41 -0.55 4.23 16 17 C -0.37 -7.14 5.81 -104.60 -0.61 -7.75 16 18 C 0.14 2.12 5.51 35.85 0.20 2.31 16 19 O -0.38 -5.85 10.80 -35.23 -0.38 -6.23 16 20 C 0.07 0.86 6.84 37.17 0.25 1.12 16 21 C -0.10 -1.56 6.27 -27.93 -0.18 -1.73 16 22 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.07 0.84 6.96 -51.93 -0.36 0.48 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.06 1.56 7.44 -51.93 -0.39 1.18 16 26 H 0.06 1.61 7.17 -51.93 -0.37 1.24 16 27 H 0.04 1.03 7.21 -51.93 -0.37 0.66 16 28 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 29 H 0.09 1.20 7.49 -51.93 -0.39 0.81 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 281.06 15.07 4.24 4.24 Total: -1.00 -30.83 281.06 -8.94 -39.77 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.36 Total: 1.15 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -3.43 Total: 7.84 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.02 Total: -61.95 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.38 Total: -6.23 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.19 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.83 -8.94 -39.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260276092.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.920 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds