Wall clock time and date at job start Mon Mar 30 2020 03:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30690 * 1 3 3 Si 1.86802 * 119.99858 * 2 1 4 4 H 1.48501 * 109.47139 * 270.00240 * 3 2 1 5 5 H 1.48500 * 109.47303 * 29.99764 * 3 2 1 6 6 H 1.48499 * 109.47254 * 150.00220 * 3 2 1 7 7 C 1.40050 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99819 * 179.97438 * 7 2 1 9 9 C 1.41564 * 119.99839 * 359.97438 * 7 2 1 10 10 N 1.33444 * 119.21540 * 0.02562 * 9 7 2 11 11 C 1.32528 * 120.78363 * 179.72244 * 10 9 7 12 12 O 1.35535 * 120.38710 * 180.02562 * 11 10 9 13 13 C 1.39435 * 119.22310 * 359.97438 * 11 10 9 14 14 C 1.39747 * 118.55586 * 0.02562 * 13 11 10 15 15 N 1.38592 * 120.41776 * 179.97438 * 14 13 11 16 16 C 1.46843 * 111.00236 * 304.20860 * 15 14 13 17 17 C 1.53035 * 109.52267 * 174.16611 * 16 15 14 18 18 C 1.53119 * 109.28011 * 59.17950 * 17 16 15 19 19 C 1.53120 * 109.16075 * 302.34538 * 18 17 16 20 20 C 1.46852 * 110.99551 * 180.02562 * 15 14 13 21 21 N 1.32677 * 119.15792 * 0.02562 * 14 13 11 22 22 H 0.97003 * 120.00454 * 359.97438 * 1 2 3 23 23 H 0.96700 * 114.00603 * 89.99394 * 12 11 10 24 24 H 1.07999 * 120.72169 * 179.97438 * 13 11 10 25 25 H 1.08996 * 109.46404 * 294.18075 * 16 15 14 26 26 H 1.09004 * 109.46397 * 54.14920 * 16 15 14 27 27 H 1.09005 * 109.50441 * 299.23729 * 17 16 15 28 28 H 1.08998 * 109.50369 * 179.12701 * 17 16 15 29 29 H 1.09002 * 109.51899 * 182.44624 * 18 17 16 30 30 H 1.08994 * 109.57596 * 62.28380 * 18 17 16 31 31 H 1.09002 * 109.50089 * 297.71391 * 19 18 17 32 32 H 1.08997 * 109.53446 * 177.61517 * 19 18 17 33 33 H 1.09003 * 109.45903 * 305.85442 * 20 15 14 34 34 H 1.08999 * 109.46539 * 65.83327 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4883 2.0465 -1.4001 5 1 1.4383 2.6527 0.7000 6 1 3.5385 1.4403 0.7000 7 6 2.0072 -1.2128 0.0005 8 1 3.0872 -1.2128 0.0001 9 6 1.2994 -2.4388 0.0016 10 7 -0.0349 -2.4206 0.0016 11 6 -0.7287 -3.5497 -0.0029 12 8 -2.0838 -3.5218 -0.0034 13 6 -0.0482 -4.7668 -0.0082 14 6 1.3491 -4.7508 -0.0080 15 7 2.0644 -5.9379 -0.0126 16 6 1.6758 -6.7909 1.1177 17 6 2.3757 -8.1467 0.9995 18 6 3.8920 -7.9342 0.9940 19 6 4.2649 -7.0036 -0.1634 20 6 3.5103 -5.6810 -0.0109 21 7 1.9823 -3.5849 -0.0023 22 1 -0.4851 0.8400 0.0004 23 1 -2.4767 -3.5103 -0.8869 24 1 -0.5894 -5.7014 -0.0115 25 1 1.9682 -6.3115 2.0518 26 1 0.5957 -6.9376 1.1075 27 1 2.0730 -8.6329 0.0720 28 1 2.0991 -8.7741 1.8468 29 1 4.3938 -8.8934 0.8663 30 1 4.2011 -7.4841 1.9373 31 1 3.9919 -7.4718 -1.1092 32 1 5.3381 -6.8142 -0.1475 33 1 3.7629 -5.0213 -0.8410 34 1 3.7939 -5.2071 0.9288 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260363109.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:44 Heat of formation + Delta-G solvation = -15.550469 kcal Electronic energy + Delta-G solvation = -18232.304696 eV Core-core repulsion = 15357.380025 eV Total energy + Delta-G solvation = -2874.924671 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.48822 -39.71231 -38.02875 -35.85744 -34.51146 -32.55877 -31.69805 -31.06794 -28.34743 -25.81146 -24.52240 -23.15464 -23.05249 -20.75612 -19.89453 -19.06446 -17.93972 -17.32903 -16.75968 -15.95691 -15.88123 -15.80682 -15.40896 -15.09492 -14.76326 -14.32764 -14.11173 -14.05683 -13.26481 -13.10054 -12.95715 -12.85143 -12.43680 -12.16811 -11.99323 -11.81937 -11.44132 -11.40922 -11.29934 -10.98405 -10.78428 -10.20479 -9.45457 -9.20876 -8.45070 -6.82887 0.59902 0.85773 1.39353 1.49484 1.56088 2.18446 2.61749 2.69552 3.14141 3.77040 3.82591 3.94280 4.04966 4.09172 4.35939 4.41559 4.46789 4.60350 4.65330 4.72225 4.86730 4.91492 4.99901 5.04825 5.07759 5.14280 5.21382 5.27060 5.42084 5.49839 5.85895 6.09636 6.11837 6.48096 6.59745 6.96220 7.09688 8.15466 8.33515 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026159 B = 0.006737 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.106711 B = 4154.990776 C = 5093.854229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.022 3.978 3 Si 1.002 2.998 4 H -0.257 1.257 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.430 4.430 8 H 0.094 0.906 9 C 0.396 3.604 10 N -0.572 5.572 11 C 0.354 3.646 12 O -0.494 6.494 13 C -0.389 4.389 14 C 0.364 3.636 15 N -0.473 5.473 16 C 0.060 3.940 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.111 4.111 20 C 0.072 3.928 21 N -0.644 5.644 22 H 0.285 0.715 23 H 0.410 0.590 24 H 0.135 0.865 25 H 0.024 0.976 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.452 -10.188 0.239 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.202 4.202 3 Si 0.821 3.179 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.179 1.179 7 C -0.465 4.465 8 H 0.112 0.888 9 C 0.158 3.842 10 N -0.301 5.301 11 C 0.162 3.838 12 O -0.303 6.303 13 C -0.420 4.420 14 C 0.119 3.881 15 N -0.192 5.192 16 C -0.066 4.066 17 C -0.145 4.145 18 C -0.157 4.157 19 C -0.149 4.149 20 C -0.055 4.055 21 N -0.371 5.371 22 H 0.095 0.905 23 H 0.268 0.732 24 H 0.153 0.847 25 H 0.042 0.958 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.111 0.889 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.659 -9.494 0.428 10.584 hybrid contribution -0.590 0.516 0.045 0.785 sum 4.069 -8.978 0.473 9.869 Atomic orbital electron populations 1.70243 1.09054 1.29806 1.27309 1.27134 0.95884 1.04808 0.92327 0.84921 0.78744 0.74444 0.79830 1.18174 1.18735 1.17853 1.19708 0.94937 0.88493 1.43401 0.88828 1.19935 0.84732 0.91298 0.88201 1.68870 1.08963 1.28593 1.23716 1.19751 0.84576 0.88910 0.90582 1.84544 1.14663 1.96174 1.34886 1.21630 0.93794 0.98464 1.28126 1.20024 0.90125 0.89252 0.88677 1.59014 1.06833 1.11263 1.42113 1.22304 1.01343 0.94081 0.88864 1.21624 0.95242 0.93851 1.03794 1.21621 0.95746 1.00391 0.97919 1.21658 0.99683 0.93546 1.00000 1.21877 0.84949 0.98209 1.00432 1.68669 1.40783 0.98151 1.29539 0.90456 0.73153 0.84720 0.95763 0.90086 0.90403 0.88778 0.88926 0.92473 0.90892 0.89712 0.92286 0.95738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -40.47 11.42 21.84 0.25 -40.22 16 2 C 0.02 1.16 5.50 85.30 0.47 1.63 16 3 Si 1.00 38.09 29.56 68.60 2.03 40.12 16 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 5 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 7 C -0.43 -24.40 9.37 23.53 0.22 -24.18 16 8 H 0.09 5.08 7.85 -2.91 -0.02 5.06 16 9 C 0.40 23.53 7.37 135.16 1.00 24.53 16 10 N -0.57 -33.68 7.89 -307.16 -2.42 -36.11 16 11 C 0.35 18.36 7.82 84.88 0.66 19.03 16 12 O -0.49 -21.79 13.57 -88.40 -1.20 -22.99 16 13 C -0.39 -18.44 9.25 22.92 0.21 -18.23 16 14 C 0.36 17.57 6.41 133.27 0.85 18.42 16 15 N -0.47 -18.24 4.68 -701.52 -3.28 -21.52 16 16 C 0.06 1.88 5.25 86.33 0.45 2.34 16 17 C -0.11 -2.33 6.09 30.65 0.19 -2.14 16 18 C -0.12 -2.42 6.00 30.67 0.18 -2.24 16 19 C -0.11 -2.73 6.09 30.65 0.19 -2.55 16 20 C 0.07 2.60 4.66 86.33 0.40 3.00 16 21 N -0.64 -35.33 8.75 -191.68 -1.68 -37.01 16 22 H 0.28 13.83 8.29 -92.71 -0.77 13.06 16 23 H 0.41 13.49 9.06 -74.06 -0.67 12.81 16 24 H 0.13 5.55 7.21 -2.91 -0.02 5.53 16 25 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 2.51 6.73 -2.39 -0.02 2.50 16 27 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 2.39 7.72 -2.39 -0.02 2.37 16 34 H 0.02 0.95 8.12 -2.39 -0.02 0.94 16 Total: -1.00 -70.82 283.00 -1.03 -71.85 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.45 Total: 26.28 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 4.83 Total: 19.60 kcal Atomic # 7 Polarization: -127.72 SS G_CDS: -7.13 Total: -134.86 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -1.20 Total: -22.99 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 2.03 Total: 40.12 kcal Total: -70.82 -1.03 -71.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260363109.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.303 kcal (2) G-P(sol) polarization free energy of solvation -70.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds