Wall clock time and date at job start Mon Mar 30 2020 03:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32504 * 120.56361 * 2 1 4 4 C 1.32492 * 120.78963 * 180.02562 * 3 2 1 5 5 N 1.38403 * 119.13276 * 179.97438 * 4 3 2 6 6 C 1.46512 * 119.99416 * 180.02562 * 5 4 3 7 7 C 1.46491 * 120.00622 * 0.02562 * 5 4 3 8 8 C 1.50702 * 109.46957 * 89.99707 * 7 5 4 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 5 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 5 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48501 * 109.47188 * 90.00793 * 12 10 8 14 14 H 1.48501 * 109.47085 * 210.00372 * 12 10 8 15 15 H 1.48498 * 109.47634 * 330.00608 * 12 10 8 16 16 N 1.32670 * 121.72621 * 0.26608 * 4 3 2 17 17 C 1.31842 * 120.45511 * 359.48304 * 16 4 3 18 18 C 1.38018 * 120.56825 * 180.02562 * 2 1 3 19 19 C 1.50800 * 133.72738 * 359.95681 * 18 2 1 20 20 O 1.44003 * 105.95098 * 197.57017 * 19 18 2 21 21 C 1.43989 * 105.01634 * 331.75397 * 20 19 18 22 22 H 1.09005 * 109.47237 * 89.99982 * 1 2 3 23 23 H 1.08997 * 109.47043 * 209.99423 * 1 2 3 24 24 H 1.08993 * 109.47745 * 329.99646 * 1 2 3 25 25 H 1.08995 * 109.46885 * 270.00135 * 6 5 4 26 26 H 1.09002 * 109.46695 * 30.00285 * 6 5 4 27 27 H 1.09003 * 109.46868 * 149.99913 * 6 5 4 28 28 H 1.09004 * 109.47166 * 329.99973 * 7 5 4 29 29 H 1.08994 * 109.47507 * 209.99679 * 7 5 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 31 31 H 1.09001 * 110.15835 * 316.69087 * 19 18 2 32 32 H 1.08996 * 110.15601 * 78.38180 * 19 18 2 33 33 H 1.08994 * 110.14871 * 147.40598 * 21 20 19 34 34 H 1.09002 * 110.14006 * 269.14337 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1807 1.1409 0.0000 4 6 3.5056 1.1462 -0.0005 5 7 4.1747 2.3578 -0.0010 6 6 5.6395 2.3856 -0.0022 7 6 3.4183 3.6123 -0.0005 8 6 3.1599 4.0424 1.4206 9 1 3.5233 3.4416 2.2412 10 6 2.4651 5.2063 1.6731 11 7 2.0230 5.9381 0.6738 12 14 2.1516 5.7434 3.4345 13 1 3.2701 6.6044 3.8960 14 1 0.8797 6.5070 3.5002 15 1 2.0559 4.5461 4.3076 16 7 4.2077 0.0205 -0.0063 17 6 3.5971 -1.1480 -0.0015 18 6 2.2089 -1.1884 -0.0005 19 6 1.8007 -2.6401 -0.0004 20 8 2.9646 -3.3784 0.4168 21 6 4.0848 -2.5763 -0.0014 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5138 25 1 6.0035 2.3924 1.0252 26 1 6.0192 1.5026 -0.5164 27 1 5.9855 3.2823 -0.5163 28 1 2.4681 3.4639 -0.5136 29 1 3.9924 4.3830 -0.5146 30 1 1.5339 6.7568 0.8515 31 1 0.9827 -2.8002 0.7020 32 1 1.5000 -2.9458 -1.0024 33 1 4.9113 -2.6910 0.6999 34 1 4.3997 -2.8651 -1.0042 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260416165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:37 Heat of formation + Delta-G solvation = 25.921151 kcal Electronic energy + Delta-G solvation = -18122.093717 eV Core-core repulsion = 15248.967390 eV Total energy + Delta-G solvation = -2873.126327 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.13308 -38.53539 -35.99040 -33.97587 -32.63607 -31.43871 -28.82035 -28.50537 -27.55401 -25.92705 -23.84001 -23.05807 -21.04028 -20.49177 -17.75794 -16.71387 -16.40407 -16.28374 -15.70651 -14.84061 -14.61350 -14.42061 -13.52172 -13.39357 -13.32884 -13.03786 -12.69245 -12.54168 -12.29704 -12.10236 -11.90098 -11.62463 -11.25524 -10.92327 -10.65923 -10.61111 -10.26289 -10.07290 -9.81872 -9.73968 -9.00214 -8.55570 -8.42104 -7.06890 -6.06674 -4.12568 1.54015 1.62036 3.27441 3.31975 3.33982 3.41046 3.90556 4.11212 4.28475 4.41129 4.70733 4.81806 5.04497 5.25605 5.31151 5.43759 5.47475 5.59839 5.67020 5.72094 5.80487 5.85765 6.07050 6.12393 6.17035 6.32880 6.53224 6.69528 7.00073 7.33242 7.48334 7.73447 7.88464 8.18054 8.24026 8.82807 8.99195 9.51783 10.99535 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027487 B = 0.006322 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.409276 B = 4427.817086 C = 4888.559688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.247 3.753 3 N -0.539 5.539 4 C 0.582 3.418 5 N -0.561 5.561 6 C 0.106 3.894 7 C 0.255 3.745 8 C -0.523 4.523 9 H 0.055 0.945 10 C 0.063 3.937 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.275 1.275 16 N -0.567 5.567 17 C 0.179 3.821 18 C -0.343 4.343 19 C 0.119 3.881 20 O -0.362 6.362 21 C 0.106 3.894 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.263 0.737 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.635 -13.983 -3.195 14.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.097 3.903 3 N -0.262 5.262 4 C 0.227 3.773 5 N -0.271 5.271 6 C -0.038 4.038 7 C 0.136 3.864 8 C -0.562 4.562 9 H 0.073 0.927 10 C -0.139 4.139 11 N -0.534 5.534 12 Si 0.725 3.275 13 H -0.206 1.206 14 H -0.210 1.210 15 H -0.200 1.200 16 N -0.292 5.292 17 C 0.027 3.973 18 C -0.353 4.353 19 C 0.042 3.958 20 O -0.279 6.279 21 C 0.029 3.971 22 H 0.100 0.900 23 H 0.093 0.907 24 H 0.104 0.896 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.125 0.875 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.175 -12.816 -3.136 13.246 hybrid contribution -0.554 -0.013 0.950 1.100 sum 0.621 -12.828 -2.185 13.028 Atomic orbital electron populations 1.20748 0.88499 1.03777 1.03238 1.20670 0.96691 0.85854 0.87106 1.68165 1.07498 1.28383 1.22152 1.19281 0.84883 0.85822 0.87307 1.46871 1.05741 1.02899 1.71624 1.21513 0.79254 1.01762 1.01278 1.19452 0.92104 0.77160 0.97721 1.21403 1.35571 1.07124 0.92146 0.92668 1.24894 0.95366 0.96255 0.97372 1.69929 1.37736 1.15024 1.30662 0.86509 0.77702 0.78594 0.84693 1.20613 1.21019 1.20020 1.66948 1.41062 0.96781 1.24433 1.22058 0.91437 0.94112 0.89692 1.21759 0.97228 0.97224 1.19117 1.21261 0.88769 0.85727 1.00074 1.89096 1.14942 1.42773 1.81122 1.21527 0.90345 0.83523 1.01729 0.89978 0.90685 0.89616 0.93417 0.91461 0.91496 0.93045 0.94708 0.92688 0.89124 0.91287 0.87550 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.16 36.00 0.37 -1.07 16 2 C 0.25 4.45 6.82 -82.38 -0.56 3.89 16 3 N -0.54 -12.07 9.05 -10.21 -0.09 -12.16 16 4 C 0.58 13.03 8.17 -322.59 -2.64 10.40 16 5 N -0.56 -12.80 2.96 -185.27 -0.55 -13.35 16 6 C 0.11 1.96 10.48 59.85 0.63 2.59 16 7 C 0.25 6.64 5.21 -5.20 -0.03 6.61 16 8 C -0.52 -14.78 9.39 -34.44 -0.32 -15.11 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 12 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 N -0.57 -11.30 9.11 -10.06 -0.09 -11.40 16 17 C 0.18 3.06 7.56 -82.24 -0.62 2.44 16 18 C -0.34 -5.57 6.15 -104.41 -0.64 -6.21 16 19 C 0.12 1.47 7.36 36.05 0.27 1.74 16 20 O -0.36 -4.84 11.72 -35.23 -0.41 -5.25 16 21 C 0.11 1.36 7.63 36.12 0.28 1.64 16 22 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.07 0.80 7.74 -51.93 -0.40 0.40 16 24 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.14 7.32 -51.93 -0.38 0.75 16 27 H 0.07 1.13 7.89 -51.93 -0.41 0.72 16 28 H 0.05 1.45 7.33 -51.93 -0.38 1.07 16 29 H 0.04 0.92 7.89 -51.93 -0.41 0.51 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.09 0.97 7.95 -51.93 -0.41 0.56 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 292.46 15.07 4.41 4.41 Total: -1.00 -32.22 292.46 -8.87 -41.09 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -4.48 Total: -3.38 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -3.38 Total: 8.60 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.00 Total: -62.23 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.41 Total: -5.25 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.22 -8.87 -41.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.016 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds