Wall clock time and date at job start Mon Mar 30 2020 03:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32504 * 120.56361 * 2 1 4 4 C 1.32492 * 120.78963 * 180.02562 * 3 2 1 5 5 N 1.38403 * 119.13276 * 179.97438 * 4 3 2 6 6 C 1.46512 * 119.99416 * 180.02562 * 5 4 3 7 7 C 1.46491 * 120.00622 * 0.02562 * 5 4 3 8 8 C 1.50702 * 109.46957 * 89.99707 * 7 5 4 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 5 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 5 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48501 * 109.47188 * 90.00793 * 12 10 8 14 14 H 1.48501 * 109.47085 * 210.00372 * 12 10 8 15 15 H 1.48498 * 109.47634 * 330.00608 * 12 10 8 16 16 N 1.32670 * 121.72621 * 0.26608 * 4 3 2 17 17 C 1.31842 * 120.45511 * 359.48304 * 16 4 3 18 18 C 1.38018 * 120.56825 * 180.02562 * 2 1 3 19 19 C 1.50800 * 133.72738 * 359.95681 * 18 2 1 20 20 O 1.44003 * 105.95098 * 197.57017 * 19 18 2 21 21 C 1.43989 * 105.01634 * 331.75397 * 20 19 18 22 22 H 1.09005 * 109.47237 * 89.99982 * 1 2 3 23 23 H 1.08997 * 109.47043 * 209.99423 * 1 2 3 24 24 H 1.08993 * 109.47745 * 329.99646 * 1 2 3 25 25 H 1.08995 * 109.46885 * 270.00135 * 6 5 4 26 26 H 1.09002 * 109.46695 * 30.00285 * 6 5 4 27 27 H 1.09003 * 109.46868 * 149.99913 * 6 5 4 28 28 H 1.09004 * 109.47166 * 329.99973 * 7 5 4 29 29 H 1.08994 * 109.47507 * 209.99679 * 7 5 4 30 30 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 31 31 H 1.09001 * 110.15835 * 316.69087 * 19 18 2 32 32 H 1.08996 * 110.15601 * 78.38180 * 19 18 2 33 33 H 1.08994 * 110.14871 * 147.40598 * 21 20 19 34 34 H 1.09002 * 110.14006 * 269.14337 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1807 1.1409 0.0000 4 6 3.5056 1.1462 -0.0005 5 7 4.1747 2.3578 -0.0010 6 6 5.6395 2.3856 -0.0022 7 6 3.4183 3.6123 -0.0005 8 6 3.1599 4.0424 1.4206 9 1 3.5233 3.4416 2.2412 10 6 2.4651 5.2063 1.6731 11 7 2.0230 5.9381 0.6738 12 14 2.1516 5.7434 3.4345 13 1 3.2701 6.6044 3.8960 14 1 0.8797 6.5070 3.5002 15 1 2.0559 4.5461 4.3076 16 7 4.2077 0.0205 -0.0063 17 6 3.5971 -1.1480 -0.0015 18 6 2.2089 -1.1884 -0.0005 19 6 1.8007 -2.6401 -0.0004 20 8 2.9646 -3.3784 0.4168 21 6 4.0848 -2.5763 -0.0014 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5138 25 1 6.0035 2.3924 1.0252 26 1 6.0192 1.5026 -0.5164 27 1 5.9855 3.2823 -0.5163 28 1 2.4681 3.4639 -0.5136 29 1 3.9924 4.3830 -0.5146 30 1 1.5339 6.7568 0.8515 31 1 0.9827 -2.8002 0.7020 32 1 1.5000 -2.9458 -1.0024 33 1 4.9113 -2.6910 0.6999 34 1 4.3997 -2.8651 -1.0042 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260416165.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:36 Heat of formation + Delta-G solvation = 6.063999 kcal Electronic energy + Delta-G solvation = -18122.954788 eV Core-core repulsion = 15248.967390 eV Total energy + Delta-G solvation = -2873.987398 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.47621 -39.78278 -37.57997 -35.44005 -34.65078 -32.83063 -30.32681 -29.60387 -29.22011 -27.45111 -25.46495 -24.55995 -22.41325 -21.99802 -19.14833 -18.70770 -18.03124 -17.40730 -16.94256 -16.65538 -16.12594 -15.79768 -15.12702 -14.90148 -14.53116 -14.24462 -14.11471 -13.80822 -13.72555 -13.39222 -13.38068 -13.16165 -12.98140 -12.77420 -12.55624 -12.20103 -12.00821 -11.72917 -11.49283 -11.10755 -10.64903 -10.37873 -9.98361 -8.72171 -8.17343 -6.36519 0.14661 0.21038 1.35019 1.36180 1.46758 1.82486 2.36555 2.79518 2.83639 2.91923 3.06613 3.43786 3.56287 3.75555 4.25406 4.38670 4.40530 4.47478 4.56103 4.62627 4.63850 4.72961 4.73752 4.83029 4.87115 4.95634 5.04985 5.18874 5.45168 5.55486 5.64479 5.94883 6.03074 6.12818 6.57866 6.72815 7.29358 7.44306 8.83748 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.027487 B = 0.006322 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.409276 B = 4427.817086 C = 4888.559688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.224 3.776 3 N -0.587 5.587 4 C 0.559 3.441 5 N -0.581 5.581 6 C 0.110 3.890 7 C 0.276 3.724 8 C -0.537 4.537 9 H 0.040 0.960 10 C 0.016 3.984 11 N -0.923 5.923 12 Si 0.963 3.037 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.279 1.279 16 N -0.575 5.575 17 C 0.158 3.842 18 C -0.333 4.333 19 C 0.122 3.878 20 O -0.367 6.367 21 C 0.114 3.886 22 H 0.101 0.899 23 H 0.111 0.889 24 H 0.065 0.935 25 H 0.044 0.956 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.021 0.979 29 H 0.022 0.978 30 H 0.268 0.732 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.198 -16.212 -2.689 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.077 3.923 3 N -0.311 5.311 4 C 0.204 3.796 5 N -0.294 5.294 6 C -0.033 4.033 7 C 0.155 3.845 8 C -0.576 4.576 9 H 0.058 0.942 10 C -0.183 4.183 11 N -0.563 5.563 12 Si 0.788 3.212 13 H -0.193 1.193 14 H -0.200 1.200 15 H -0.204 1.204 16 N -0.300 5.300 17 C 0.007 3.993 18 C -0.342 4.342 19 C 0.045 3.955 20 O -0.284 6.284 21 C 0.036 3.964 22 H 0.120 0.880 23 H 0.130 0.870 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.139 0.861 34 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.728 -15.115 -2.636 15.360 hybrid contribution -0.469 0.518 0.745 1.022 sum 0.259 -14.597 -1.891 14.721 Atomic orbital electron populations 1.20870 0.85675 1.04519 1.04680 1.21388 0.98590 0.85599 0.86700 1.68146 1.08055 1.31068 1.23818 1.19450 0.85322 0.86353 0.88492 1.46710 1.06830 1.02274 1.73566 1.21592 0.77307 1.03004 1.01394 1.18874 0.90957 0.78504 0.96126 1.21555 1.35980 1.07343 0.92710 0.94195 1.25702 0.94903 0.96159 1.01544 1.70027 1.38133 1.15429 1.32685 0.85492 0.78189 0.78048 0.79494 1.19268 1.20001 1.20400 1.66959 1.41079 0.97087 1.24878 1.22972 0.92595 0.95016 0.88705 1.22275 0.96977 0.98849 1.16071 1.21503 0.88941 0.82532 1.02483 1.89103 1.15273 1.42557 1.81509 1.21731 0.90421 0.80402 1.03805 0.88046 0.87044 0.91647 0.93778 0.89903 0.90504 0.96137 0.95974 0.92282 0.86791 0.88357 0.86094 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.59 10.16 71.23 0.72 -1.87 16 2 C 0.22 7.98 6.82 42.40 0.29 8.27 16 3 N -0.59 -27.07 9.05 -186.22 -1.69 -28.75 16 4 C 0.56 25.74 8.17 261.41 2.14 27.88 16 5 N -0.58 -27.58 2.96 -740.06 -2.19 -29.77 16 6 C 0.11 4.17 10.48 127.76 1.34 5.51 16 7 C 0.28 15.14 5.21 85.64 0.45 15.59 16 8 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 9 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 10 C 0.02 0.94 5.46 84.66 0.46 1.40 16 11 N -0.92 -54.90 13.29 21.45 0.28 -54.61 16 12 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 13 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 15 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 16 N -0.57 -22.86 9.11 -185.75 -1.69 -24.55 16 17 C 0.16 5.14 7.56 42.78 0.32 5.47 16 18 C -0.33 -10.09 6.15 -19.73 -0.12 -10.21 16 19 C 0.12 2.51 7.36 71.27 0.52 3.03 16 20 O -0.37 -8.32 11.72 -148.98 -1.75 -10.07 16 21 C 0.11 2.53 7.63 71.31 0.54 3.07 16 22 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 23 H 0.11 2.00 7.74 -2.39 -0.02 1.98 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.08 2.82 7.32 -2.39 -0.02 2.80 16 27 H 0.08 2.67 7.89 -2.39 -0.02 2.66 16 28 H 0.02 1.23 7.33 -2.38 -0.02 1.22 16 29 H 0.02 1.24 7.89 -2.39 -0.02 1.23 16 30 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 31 H 0.11 1.87 7.95 -2.39 -0.02 1.86 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -72.04 292.46 3.01 -69.04 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.10 Total: 4.56 kcal Atomic # 6 Polarization: 20.09 SS G_CDS: 6.91 Total: 27.00 kcal Atomic # 7 Polarization: -132.40 SS G_CDS: -5.28 Total: -137.68 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -1.75 Total: -10.07 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -72.04 3.01 -69.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260416165.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.101 kcal (2) G-P(sol) polarization free energy of solvation -72.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds