Wall clock time and date at job start Mon Mar 30 2020 03:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48496 * 109.46938 * 274.97986 * 3 2 1 5 5 H 1.48501 * 109.47094 * 34.98557 * 3 2 1 6 6 H 1.48502 * 109.46725 * 154.98220 * 3 2 1 7 7 C 1.40067 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08010 * 119.99518 * 186.24049 * 7 2 1 9 9 C 1.41580 * 120.00320 * 6.24182 * 7 2 1 10 10 C 1.40548 * 120.59398 * 174.04688 * 9 7 2 11 11 C 1.39470 * 118.18900 * 180.24251 * 10 9 7 12 12 N 1.38590 * 120.42645 * 179.78670 * 11 10 9 13 13 C 1.46840 * 111.00224 * 303.92675 * 12 11 10 14 14 C 1.53036 * 109.52441 * 174.16274 * 13 12 11 15 15 C 1.53116 * 109.27699 * 59.18105 * 14 13 12 16 16 C 1.53120 * 109.15999 * 302.34464 * 15 14 13 17 17 C 1.46849 * 110.99446 * 179.71782 * 12 11 10 18 18 N 1.32972 * 119.14195 * 359.50670 * 11 10 9 19 19 C 1.32499 * 121.11715 * 0.25223 * 18 11 10 20 20 O 1.35448 * 118.99263 * 179.97438 * 19 18 11 21 21 N 1.31915 * 122.01146 * 0.02562 * 19 18 11 22 22 H 0.97001 * 119.99818 * 0.02562 * 1 2 3 23 23 H 1.08007 * 120.90332 * 0.02562 * 10 9 7 24 24 H 1.09002 * 109.46047 * 294.18057 * 13 12 11 25 25 H 1.08999 * 109.46090 * 54.14871 * 13 12 11 26 26 H 1.08997 * 109.50749 * 299.24010 * 14 13 12 27 27 H 1.09002 * 109.50143 * 179.11529 * 14 13 12 28 28 H 1.09006 * 109.52175 * 182.43895 * 15 14 13 29 29 H 1.09004 * 109.57603 * 62.28055 * 15 14 13 30 30 H 1.09000 * 109.50309 * 297.71133 * 16 15 14 31 31 H 1.09008 * 109.53371 * 177.61505 * 16 15 14 32 32 H 1.08997 * 109.46347 * 305.84986 * 17 12 11 33 33 H 1.08997 * 109.46152 * 65.83278 * 17 12 11 34 34 H 0.96700 * 114.00159 * 90.00514 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3832 2.1071 -1.3948 5 1 1.4951 2.6199 0.8028 6 1 3.5872 1.4119 0.5921 7 6 2.0072 -1.2131 0.0005 8 1 3.0825 -1.2158 0.1022 9 6 1.3055 -2.4356 -0.1322 10 6 2.0018 -3.6499 -0.2583 11 6 1.2605 -4.8238 -0.3913 12 7 1.8996 -6.0464 -0.5233 13 6 2.8264 -6.0356 -1.6621 14 6 3.6180 -7.3450 -1.6899 15 6 2.6452 -8.5213 -1.8107 16 6 1.6605 -8.4815 -0.6388 17 6 0.9257 -7.1391 -0.6416 18 7 -0.0675 -4.7552 -0.3842 19 6 -0.6925 -3.5938 -0.2583 20 8 -2.0469 -3.5738 -0.2571 21 7 -0.0361 -2.4562 -0.1352 22 1 -0.4850 0.8401 -0.0004 23 1 3.0817 -3.6730 -0.2559 24 1 2.2618 -5.9327 -2.5889 25 1 3.5153 -5.1969 -1.5617 26 1 4.1935 -7.4420 -0.7693 27 1 4.2946 -7.3432 -2.5444 28 1 3.2018 -9.4582 -1.7873 29 1 2.0969 -8.4467 -2.7499 30 1 2.2053 -8.5963 0.2983 31 1 0.9386 -9.2918 -0.7417 32 1 0.2341 -7.1020 0.2001 33 1 0.3702 -7.0312 -1.5731 34 1 -2.4407 -3.6634 0.6215 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260671408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:58 Heat of formation + Delta-G solvation = 6.029263 kcal Electronic energy + Delta-G solvation = -18196.840729 eV Core-core repulsion = 15322.851825 eV Total energy + Delta-G solvation = -2873.988904 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.73566 -38.14980 -36.00525 -34.27535 -32.90049 -31.12995 -30.40072 -29.03607 -26.41369 -24.25988 -23.08632 -21.54063 -21.24440 -19.49956 -18.20286 -17.16281 -16.44858 -15.31597 -15.06713 -14.56450 -14.31709 -14.15782 -13.82901 -13.69627 -13.12631 -12.94011 -12.70301 -12.13483 -11.89890 -11.36594 -11.27899 -11.11029 -10.99315 -10.69966 -10.59473 -10.36090 -10.25396 -10.14286 -9.87476 -9.29125 -8.96934 -8.30051 -7.50816 -7.37623 -6.52846 -4.83583 2.51787 2.74879 3.02262 3.05999 3.13939 3.83650 4.22089 4.48721 4.79042 4.98525 5.05171 5.08508 5.42229 5.60497 5.72951 5.77701 5.80722 5.93443 6.01661 6.03817 6.16673 6.21586 6.32547 6.39339 6.55186 6.64721 6.79053 6.92880 7.06105 7.14355 7.41018 7.96044 8.04568 8.24617 8.58275 8.77508 9.03936 10.01151 10.15788 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.030577 B = 0.006259 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.514853 B = 4472.550598 C = 5273.410047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.067 3.933 3 Si 0.913 3.087 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.092 0.908 9 C 0.292 3.708 10 C -0.338 4.338 11 C 0.352 3.648 12 N -0.475 5.475 13 C 0.063 3.937 14 C -0.116 4.116 15 C -0.122 4.122 16 C -0.120 4.120 17 C 0.072 3.928 18 N -0.658 5.658 19 C 0.494 3.506 20 O -0.477 6.477 21 N -0.527 5.527 22 H 0.277 0.723 23 H 0.112 0.888 24 H 0.036 0.964 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.295 -8.412 -1.131 9.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.161 4.161 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.449 4.449 8 H 0.110 0.890 9 C 0.164 3.836 10 C -0.367 4.367 11 C 0.121 3.879 12 N -0.194 5.194 13 C -0.064 4.064 14 C -0.154 4.154 15 C -0.159 4.159 16 C -0.158 4.158 17 C -0.055 4.055 18 N -0.398 5.398 19 C 0.185 3.815 20 O -0.278 6.278 21 N -0.259 5.259 22 H 0.088 0.912 23 H 0.131 0.869 24 H 0.055 0.945 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.408 -8.301 -1.322 9.070 hybrid contribution 0.578 0.758 -0.120 0.960 sum 3.986 -7.543 -1.442 8.652 Atomic orbital electron populations 1.70112 1.07346 1.28388 1.26460 1.26170 0.94972 1.01465 0.93453 0.86222 0.80528 0.80369 0.79255 1.19287 1.19915 1.18260 1.19685 0.94881 0.88973 1.41392 0.89042 1.18401 0.86561 0.91927 0.86699 1.21875 0.99604 0.92786 1.22436 1.19153 0.87619 0.88704 0.92453 1.59061 1.18424 1.01835 1.40069 1.22165 0.94940 0.98627 0.90647 1.21610 0.97651 0.93946 1.02172 1.21598 0.97579 0.98094 0.98657 1.21683 0.98328 0.96939 0.98875 1.21811 0.93062 0.88573 1.02062 1.67337 1.09510 1.30830 1.32100 1.20183 0.84563 0.84597 0.92112 1.84603 1.14636 1.95111 1.33438 1.68933 1.09196 1.25865 1.21876 0.91157 0.86946 0.94538 0.89796 0.91044 0.91514 0.92120 0.92354 0.91414 0.91744 0.90009 0.94090 0.75586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.47 11.55 55.55 0.64 -17.83 16 2 C 0.07 1.66 5.49 -17.35 -0.10 1.57 16 3 Si 0.91 17.93 29.56 -169.99 -5.03 12.91 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 7 C -0.42 -10.83 9.18 -37.62 -0.35 -11.18 16 8 H 0.09 2.19 7.86 -52.48 -0.41 1.78 16 9 C 0.29 7.98 6.57 -84.69 -0.56 7.43 16 10 C -0.34 -8.35 9.04 -38.25 -0.35 -8.70 16 11 C 0.35 8.31 6.41 -154.80 -0.99 7.32 16 12 N -0.47 -9.20 4.68 -173.10 -0.81 -10.01 16 13 C 0.06 1.04 5.25 -3.84 -0.02 1.02 16 14 C -0.12 -1.47 6.09 -26.65 -0.16 -1.63 16 15 C -0.12 -1.44 6.00 -26.61 -0.16 -1.60 16 16 C -0.12 -1.59 6.09 -26.65 -0.16 -1.75 16 17 C 0.07 1.26 4.67 -3.83 -0.02 1.24 16 18 N -0.66 -16.43 8.84 -14.03 -0.12 -16.55 16 19 C 0.49 12.99 8.70 -91.44 -0.80 12.19 16 20 O -0.48 -11.06 13.64 -18.03 -0.25 -11.30 16 21 N -0.53 -14.89 8.09 -12.73 -0.10 -15.00 16 22 H 0.28 6.56 8.29 -40.82 -0.34 6.23 16 23 H 0.11 2.55 7.24 -52.48 -0.38 2.17 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.08 1.40 6.75 -51.93 -0.35 1.05 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 32 H 0.08 1.53 7.72 -51.93 -0.40 1.13 16 33 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 34 H 0.39 6.91 9.06 45.56 0.41 7.32 16 LS Contribution 283.21 15.07 4.27 4.27 Total: -1.00 -30.91 283.21 -8.70 -39.61 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.65 Total: 8.01 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -3.65 Total: 5.90 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -0.40 Total: -59.39 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.25 Total: -11.30 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.91 -8.70 -39.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260671408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.635 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds