Wall clock time and date at job start Mon Mar 30 2020 04:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33146 * 120.14736 * 2 1 4 4 C 1.31483 * 122.34522 * 179.53651 * 3 2 1 5 5 N 1.34364 * 120.70383 * 0.11097 * 4 3 2 6 6 C 1.35593 * 119.80873 * 0.74699 * 5 4 3 7 7 O 1.21987 * 120.41527 * 179.00810 * 6 5 4 8 8 C 1.36210 * 120.14491 * 180.25239 * 2 1 3 9 9 C 1.50699 * 120.87625 * 0.22279 * 8 2 1 10 10 C 1.50703 * 109.47146 * 94.97750 * 9 8 2 11 11 H 1.07998 * 119.99989 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99934 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99846 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99876 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.46927 * 90.00492 * 14 12 10 16 16 H 1.48502 * 109.47063 * 210.00142 * 14 12 10 17 17 H 1.48495 * 109.47297 * 330.00335 * 14 12 10 18 18 C 1.46439 * 122.64681 * 180.94307 * 5 4 3 19 19 C 1.52770 * 110.52903 * 341.94255 * 18 5 4 20 20 N 1.47240 * 108.31103 * 50.70107 * 19 18 5 21 21 C 1.46613 * 109.86178 * 290.52166 * 20 19 18 22 22 H 1.09000 * 109.47278 * 269.75072 * 1 2 3 23 23 H 1.09007 * 109.47138 * 29.74554 * 1 2 3 24 24 H 1.08993 * 109.47390 * 149.74529 * 1 2 3 25 25 H 1.09000 * 109.47386 * 214.97900 * 9 8 2 26 26 H 1.09003 * 109.47001 * 334.97915 * 9 8 2 27 27 H 0.97005 * 119.99688 * 179.97438 * 13 12 10 28 28 H 1.08997 * 109.26796 * 221.67167 * 18 5 4 29 29 H 1.08998 * 109.23557 * 102.19393 * 18 5 4 30 30 H 1.08998 * 109.69411 * 290.99746 * 19 18 5 31 31 H 1.08993 * 109.73177 * 170.42605 * 19 18 5 32 32 H 1.00901 * 110.99742 * 167.37852 * 20 19 18 33 33 H 1.08999 * 109.26671 * 290.65240 * 21 20 19 34 34 H 1.08999 * 109.26522 * 171.19139 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1756 1.1514 0.0000 4 6 3.4895 1.2018 0.0090 5 7 4.2193 0.0737 0.0164 6 6 3.5978 -1.1313 -0.0006 7 8 4.2498 -2.1623 -0.0123 8 6 2.1910 -1.1779 -0.0052 9 6 1.4609 -2.4962 -0.0160 10 6 1.3301 -2.9863 -1.4351 11 1 1.7355 -2.4019 -2.2478 12 6 0.6928 -4.1809 -1.6959 13 7 0.5792 -4.6088 -2.9342 14 14 -0.0078 -5.1920 -0.2900 15 1 -1.4131 -4.7830 -0.0385 16 1 0.0318 -6.6326 -0.6487 17 1 0.8008 -4.9643 0.9345 18 6 5.6834 0.0802 0.0469 19 6 6.2220 1.4457 -0.3762 20 7 5.5339 2.4797 0.4146 21 6 4.1292 2.5682 0.0042 22 1 -0.3634 -0.0045 1.0276 23 1 -0.3634 0.8923 -0.5099 24 1 -0.3634 -0.8876 -0.5177 25 1 2.0194 -3.2257 0.5704 26 1 0.4687 -2.3656 0.4161 27 1 0.1312 -5.4495 -3.1176 28 1 6.0607 -0.6821 -0.6348 29 1 6.0225 -0.1425 1.0585 30 1 6.0277 1.6047 -1.4369 31 1 7.2945 1.4926 -0.1883 32 1 5.9947 3.3725 0.3215 33 1 4.0738 2.9877 -1.0003 34 1 3.5930 3.2188 0.6950 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261078317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:10 Heat of formation + Delta-G solvation = 12.886844 kcal Electronic energy + Delta-G solvation = -18460.940681 eV Core-core repulsion = 15587.249144 eV Total energy + Delta-G solvation = -2873.691537 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60108 -37.85706 -37.12167 -34.53460 -33.15298 -32.03794 -30.29707 -28.39841 -27.93504 -25.33804 -23.81205 -22.27629 -21.68435 -19.77073 -18.15298 -16.93732 -16.85802 -16.41146 -15.85709 -15.30695 -14.87229 -14.36344 -14.16008 -13.77021 -13.29138 -12.99522 -12.74685 -12.49447 -12.22401 -12.07035 -11.99664 -11.80574 -11.36925 -11.19036 -10.71564 -10.43679 -10.09253 -9.59672 -9.47833 -9.36145 -9.22846 -9.05823 -8.49392 -7.40972 -5.99539 -3.96859 1.15912 2.36098 2.71768 3.34031 3.42315 3.48437 3.57631 4.07290 4.10694 4.46808 4.49498 4.66280 4.88788 5.04748 5.08138 5.23220 5.33095 5.34687 5.47920 5.64736 5.88388 5.93498 6.10056 6.24357 6.35123 6.44480 6.55135 6.78168 6.91810 7.12143 7.16050 7.39289 7.76970 8.29257 8.43210 8.57704 9.03353 9.60903 11.13885 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033671 B = 0.006740 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.388201 B = 4153.569968 C = 4583.232434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.141 3.859 3 N -0.535 5.535 4 C 0.366 3.634 5 N -0.512 5.512 6 C 0.513 3.487 7 O -0.522 6.522 8 C -0.186 4.186 9 C 0.041 3.959 10 C -0.502 4.502 11 H 0.068 0.932 12 C 0.070 3.930 13 N -0.902 5.902 14 Si 0.876 3.124 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.264 1.264 18 C 0.097 3.903 19 C 0.038 3.962 20 N -0.684 5.684 21 C 0.113 3.887 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.358 0.642 33 H 0.070 0.930 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.183 16.471 6.758 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.022 3.978 3 N -0.259 5.259 4 C 0.101 3.899 5 N -0.232 5.232 6 C 0.313 3.687 7 O -0.399 6.399 8 C -0.193 4.193 9 C 0.003 3.997 10 C -0.540 4.540 11 H 0.086 0.914 12 C -0.131 4.131 13 N -0.541 5.541 14 Si 0.703 3.297 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.188 1.188 18 C -0.026 4.026 19 C -0.092 4.092 20 N -0.317 5.317 21 C -0.018 4.018 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.115 0.885 25 H 0.052 0.948 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.177 0.823 33 H 0.088 0.912 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.844 15.815 7.175 19.056 hybrid contribution 0.230 -0.900 -0.349 0.992 sum 8.074 14.915 6.826 18.282 Atomic orbital electron populations 1.20729 0.88205 1.04334 1.02522 1.20754 0.97180 0.86716 0.93124 1.67768 1.04381 1.30120 1.23596 1.22613 0.87725 0.88238 0.91299 1.46422 1.09222 1.07729 1.59801 1.17475 0.89644 0.82060 0.79485 1.90907 1.67136 1.30936 1.50934 1.21787 0.91577 0.99356 1.06585 1.18465 0.93983 0.88401 0.98882 1.20823 1.36646 1.05994 0.90499 0.91428 1.24942 0.95721 0.97024 0.95456 1.69899 1.43795 1.21779 1.18677 0.86826 0.79687 0.79715 0.83499 1.20066 1.21223 1.18843 1.21830 0.78185 0.98212 1.04385 1.22354 0.99805 0.90991 0.96058 1.60787 1.02032 1.11464 1.57449 1.20798 0.88679 0.90373 1.01936 0.90956 0.91118 0.88482 0.94784 0.95219 0.92704 0.88260 0.89340 0.93291 0.87947 0.82261 0.91231 0.86436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 9.40 36.00 0.34 -1.41 16 2 C 0.14 2.82 6.78 -82.75 -0.56 2.26 16 3 N -0.54 -9.44 10.13 -6.84 -0.07 -9.51 16 4 C 0.37 5.72 7.47 -155.12 -1.16 4.56 16 5 N -0.51 -8.96 2.97 -116.33 -0.35 -9.31 16 6 C 0.51 11.66 7.38 -14.94 -0.11 11.55 16 7 O -0.52 -13.46 16.01 4.93 0.08 -13.38 16 8 C -0.19 -4.35 5.10 -104.40 -0.53 -4.88 16 9 C 0.04 1.06 3.31 -29.03 -0.10 0.96 16 10 C -0.50 -15.03 9.58 -34.44 -0.33 -15.36 16 11 H 0.07 2.23 7.98 -52.49 -0.42 1.81 16 12 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 13 N -0.90 -28.58 13.96 55.43 0.77 -27.81 16 14 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 17 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 18 C 0.10 1.29 6.08 -4.19 -0.03 1.26 16 19 C 0.04 0.32 6.64 -3.76 -0.02 0.30 16 20 N -0.68 -5.63 6.93 -115.06 -0.80 -6.42 16 21 C 0.11 1.13 6.57 -5.05 -0.03 1.10 16 22 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 23 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 24 H 0.10 1.88 6.57 -51.93 -0.34 1.54 16 25 H 0.03 0.94 6.88 -51.93 -0.36 0.58 16 26 H 0.03 0.71 5.90 -51.93 -0.31 0.41 16 27 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 28 H 0.10 1.40 7.64 -51.93 -0.40 1.00 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.42 8.07 -51.93 -0.42 0.00 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.36 1.77 8.90 -39.29 -0.35 1.42 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 281.10 15.07 4.24 4.24 Total: -1.00 -36.64 281.10 -7.72 -44.36 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -4.29 Total: -2.15 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -2.63 Total: 2.34 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.44 Total: -53.04 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -36.64 -7.72 -44.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.245 kcal (2) G-P(sol) polarization free energy of solvation -36.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds