Wall clock time and date at job start Mon Mar 30 2020 04:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.33146 * 120.14736 * 2 1 4 4 C 1.31483 * 122.34522 * 179.53651 * 3 2 1 5 5 N 1.34364 * 120.70383 * 0.11097 * 4 3 2 6 6 C 1.35593 * 119.80873 * 0.74699 * 5 4 3 7 7 O 1.21987 * 120.41527 * 179.00810 * 6 5 4 8 8 C 1.36210 * 120.14491 * 180.25239 * 2 1 3 9 9 C 1.50699 * 120.87625 * 0.22279 * 8 2 1 10 10 C 1.50703 * 109.47146 * 94.97750 * 9 8 2 11 11 H 1.07998 * 119.99989 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99934 * 180.02562 * 10 9 8 13 13 N 1.31512 * 119.99846 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 119.99876 * 359.97438 * 12 10 9 15 15 H 1.48505 * 109.46927 * 90.00492 * 14 12 10 16 16 H 1.48502 * 109.47063 * 210.00142 * 14 12 10 17 17 H 1.48495 * 109.47297 * 330.00335 * 14 12 10 18 18 C 1.46439 * 122.64681 * 180.94307 * 5 4 3 19 19 C 1.52770 * 110.52903 * 341.94255 * 18 5 4 20 20 N 1.47240 * 108.31103 * 50.70107 * 19 18 5 21 21 C 1.46613 * 109.86178 * 290.52166 * 20 19 18 22 22 H 1.09000 * 109.47278 * 269.75072 * 1 2 3 23 23 H 1.09007 * 109.47138 * 29.74554 * 1 2 3 24 24 H 1.08993 * 109.47390 * 149.74529 * 1 2 3 25 25 H 1.09000 * 109.47386 * 214.97900 * 9 8 2 26 26 H 1.09003 * 109.47001 * 334.97915 * 9 8 2 27 27 H 0.97005 * 119.99688 * 179.97438 * 13 12 10 28 28 H 1.08997 * 109.26796 * 221.67167 * 18 5 4 29 29 H 1.08998 * 109.23557 * 102.19393 * 18 5 4 30 30 H 1.08998 * 109.69411 * 290.99746 * 19 18 5 31 31 H 1.08993 * 109.73177 * 170.42605 * 19 18 5 32 32 H 1.00901 * 110.99742 * 167.37852 * 20 19 18 33 33 H 1.08999 * 109.26671 * 290.65240 * 21 20 19 34 34 H 1.08999 * 109.26522 * 171.19139 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1756 1.1514 0.0000 4 6 3.4895 1.2018 0.0090 5 7 4.2193 0.0737 0.0164 6 6 3.5978 -1.1313 -0.0006 7 8 4.2498 -2.1623 -0.0123 8 6 2.1910 -1.1779 -0.0052 9 6 1.4609 -2.4962 -0.0160 10 6 1.3301 -2.9863 -1.4351 11 1 1.7355 -2.4019 -2.2478 12 6 0.6928 -4.1809 -1.6959 13 7 0.5792 -4.6088 -2.9342 14 14 -0.0078 -5.1920 -0.2900 15 1 -1.4131 -4.7830 -0.0385 16 1 0.0318 -6.6326 -0.6487 17 1 0.8008 -4.9643 0.9345 18 6 5.6834 0.0802 0.0469 19 6 6.2220 1.4457 -0.3762 20 7 5.5339 2.4797 0.4146 21 6 4.1292 2.5682 0.0042 22 1 -0.3634 -0.0045 1.0276 23 1 -0.3634 0.8923 -0.5099 24 1 -0.3634 -0.8876 -0.5177 25 1 2.0194 -3.2257 0.5704 26 1 0.4687 -2.3656 0.4161 27 1 0.1312 -5.4495 -3.1176 28 1 6.0607 -0.6821 -0.6348 29 1 6.0225 -0.1425 1.0585 30 1 6.0277 1.6047 -1.4369 31 1 7.2945 1.4926 -0.1883 32 1 5.9947 3.3725 0.3215 33 1 4.0738 2.9877 -1.0003 34 1 3.5930 3.2188 0.6950 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261078317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:09 Heat of formation + Delta-G solvation = -16.525626 kcal Electronic energy + Delta-G solvation = -18462.216101 eV Core-core repulsion = 15587.249144 eV Total energy + Delta-G solvation = -2874.966957 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.05199 -39.14311 -38.61244 -35.93965 -34.94117 -33.78165 -31.81522 -29.86845 -29.36418 -26.81201 -25.00393 -23.85795 -23.41987 -20.99699 -19.63471 -19.06102 -18.15419 -17.76372 -17.02236 -16.64986 -16.31230 -15.90486 -15.44549 -15.14587 -15.01329 -14.48066 -14.24182 -14.06902 -13.84591 -13.71625 -13.11424 -12.97785 -12.87309 -12.69978 -12.34224 -12.30131 -12.04268 -11.71001 -11.11331 -10.96636 -10.93031 -10.77757 -9.77427 -9.08216 -8.32101 -6.35628 -0.32199 0.77908 1.30925 1.34344 1.37887 1.48510 2.33931 2.54422 2.65100 3.01938 3.14365 3.42529 3.46815 3.79120 4.02208 4.11356 4.27580 4.32744 4.43572 4.50523 4.68243 4.71774 4.78374 4.82047 4.89174 4.98514 5.17456 5.36342 5.47509 5.56834 5.58161 5.64723 6.21900 6.35524 6.64271 6.80609 6.81410 7.26251 8.85259 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033671 B = 0.006740 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.388201 B = 4153.569968 C = 4583.232434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.174 3.826 3 N -0.545 5.545 4 C 0.381 3.619 5 N -0.509 5.509 6 C 0.500 3.500 7 O -0.577 6.577 8 C -0.261 4.261 9 C 0.057 3.943 10 C -0.509 4.509 11 H 0.015 0.985 12 C 0.008 3.992 13 N -0.950 5.950 14 Si 0.949 3.051 15 H -0.246 1.246 16 H -0.281 1.281 17 H -0.260 1.260 18 C 0.085 3.915 19 C 0.049 3.951 20 N -0.683 5.683 21 C 0.116 3.884 22 H 0.103 0.897 23 H 0.095 0.905 24 H 0.072 0.928 25 H 0.008 0.992 26 H 0.049 0.951 27 H 0.268 0.732 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.139 0.861 32 H 0.384 0.616 33 H 0.098 0.902 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.316 19.582 8.456 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.053 3.947 3 N -0.269 5.269 4 C 0.118 3.882 5 N -0.225 5.225 6 C 0.302 3.698 7 O -0.459 6.459 8 C -0.268 4.268 9 C 0.019 3.981 10 C -0.547 4.547 11 H 0.034 0.966 12 C -0.188 4.188 13 N -0.591 5.591 14 Si 0.771 3.229 15 H -0.170 1.170 16 H -0.207 1.207 17 H -0.184 1.184 18 C -0.036 4.036 19 C -0.080 4.080 20 N -0.319 5.319 21 C -0.015 4.015 22 H 0.121 0.879 23 H 0.114 0.886 24 H 0.090 0.910 25 H 0.026 0.974 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.157 0.843 32 H 0.208 0.792 33 H 0.116 0.884 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.030 19.018 8.876 22.471 hybrid contribution 0.303 -1.631 -0.940 1.907 sum 8.333 17.387 7.936 20.850 Atomic orbital electron populations 1.20815 0.86397 1.04276 1.04367 1.21173 0.98589 0.86403 0.88555 1.67958 1.05343 1.28253 1.25388 1.24048 0.87575 0.89844 0.86741 1.46487 1.11230 1.06818 1.57979 1.17560 0.89794 0.83047 0.79382 1.90843 1.68088 1.32977 1.53944 1.21554 0.92403 0.99300 1.13518 1.18136 0.94884 0.89551 0.95578 1.21012 1.36126 1.05918 0.91617 0.96631 1.25951 0.96065 0.98268 0.98556 1.70056 1.45125 1.22640 1.21229 0.85681 0.80101 0.77641 0.79440 1.17005 1.20652 1.18417 1.22218 0.75543 1.01342 1.04526 1.22357 1.01492 0.88011 0.96187 1.60723 1.01154 1.12843 1.57192 1.21077 0.89690 0.86423 1.04277 0.87919 0.88645 0.90954 0.97419 0.93249 0.92313 0.89935 0.88938 0.92751 0.84267 0.79249 0.88446 0.83927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.38 9.40 71.23 0.67 -2.71 16 2 C 0.17 6.90 6.78 41.89 0.28 7.18 16 3 N -0.55 -18.12 10.13 -175.54 -1.78 -19.90 16 4 C 0.38 11.05 7.47 138.11 1.03 12.09 16 5 N -0.51 -17.71 2.97 -639.58 -1.90 -19.61 16 6 C 0.50 23.83 7.38 84.73 0.63 24.45 16 7 O -0.58 -31.88 16.01 -5.27 -0.08 -31.96 16 8 C -0.26 -12.64 5.10 -19.72 -0.10 -12.74 16 9 C 0.06 3.07 3.31 29.10 0.10 3.17 16 10 C -0.51 -32.31 9.58 25.60 0.25 -32.07 16 11 H 0.02 1.10 7.98 -2.91 -0.02 1.07 16 12 C 0.01 0.51 5.47 84.66 0.46 0.97 16 13 N -0.95 -62.70 13.96 21.45 0.30 -62.40 16 14 Si 0.95 47.07 27.47 68.60 1.88 48.95 16 15 H -0.25 -11.03 7.11 99.48 0.71 -10.32 16 16 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 17 H -0.26 -12.65 6.54 99.48 0.65 -11.99 16 18 C 0.09 2.20 6.08 86.31 0.52 2.73 16 19 C 0.05 0.67 6.64 86.16 0.57 1.24 16 20 N -0.68 -7.89 6.93 -517.93 -3.59 -11.48 16 21 C 0.12 1.77 6.57 85.67 0.56 2.33 16 22 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 23 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 24 H 0.07 2.81 6.57 -2.39 -0.02 2.79 16 25 H 0.01 0.44 6.88 -2.39 -0.02 0.42 16 26 H 0.05 2.40 5.90 -2.39 -0.01 2.39 16 27 H 0.27 16.34 8.31 -92.70 -0.77 15.57 16 28 H 0.08 2.41 7.64 -2.39 -0.02 2.39 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.05 0.73 8.07 -2.39 -0.02 0.71 16 31 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.38 1.54 8.90 -89.69 -0.80 0.75 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -87.48 281.10 0.08 -87.40 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: 0.27 Total: 2.36 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 4.98 Total: 6.64 kcal Atomic # 7 Polarization: -106.42 SS G_CDS: -6.97 Total: -113.39 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.08 Total: -31.96 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.88 Total: 48.95 kcal Total: -87.48 0.08 -87.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261078317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.876 kcal (2) G-P(sol) polarization free energy of solvation -87.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds